Wall clock time and date at job start Tue Mar 31 2020 13:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 H 1.08997 * 109.47305 * 181.84575 * 3 2 1 5 5 C 1.50708 * 109.47142 * 61.85113 * 3 2 1 6 6 H 1.07998 * 120.00178 * 244.99063 * 5 3 2 7 7 C 1.37880 * 119.99942 * 64.98326 * 5 3 2 8 8 N 1.31513 * 119.99957 * 9.79837 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 189.79590 * 7 5 3 10 10 H 1.48506 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47244 * 299.99987 * 9 7 5 12 12 H 1.48500 * 109.46816 * 60.00610 * 9 7 5 13 13 N 1.46896 * 109.47300 * 301.85313 * 3 2 1 14 14 C 1.46900 * 110.99839 * 274.23412 * 13 3 2 15 15 C 1.50696 * 109.47165 * 183.56133 * 14 13 3 16 16 O 1.21278 * 120.00424 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00077 * 179.97438 * 15 14 13 18 18 N 1.40096 * 120.00361 * 179.97438 * 17 15 14 19 19 C 1.34779 * 120.00361 * 179.97438 * 18 17 15 20 20 O 1.21556 * 119.99559 * 0.02562 * 19 18 17 21 21 C 1.47842 * 120.00130 * 179.97438 * 19 18 17 22 22 C 1.39598 * 120.14229 * 359.72865 * 21 19 18 23 23 C 1.37943 * 119.85144 * 179.69941 * 22 21 19 24 24 C 1.38385 * 120.14054 * 0.59498 * 23 22 21 25 25 C 1.38334 * 120.29472 * 359.67482 * 24 23 22 26 26 C 1.50703 * 119.92917 * 179.97438 * 25 24 23 27 27 C 1.37981 * 120.14607 * 0.02562 * 25 24 23 28 28 H 1.09005 * 109.46996 * 64.48620 * 1 2 3 29 29 H 1.09002 * 109.47231 * 184.48592 * 1 2 3 30 30 H 1.08999 * 109.46877 * 304.48761 * 1 2 3 31 31 H 1.08998 * 109.46901 * 240.00272 * 2 1 3 32 32 H 1.09000 * 109.47196 * 119.99665 * 2 1 3 33 33 H 0.97004 * 120.00255 * 357.09370 * 8 7 5 34 34 H 1.00899 * 111.00000 * 150.28100 * 13 3 2 35 35 H 1.09004 * 109.47078 * 303.56314 * 14 13 3 36 36 H 1.09000 * 109.47620 * 63.55708 * 14 13 3 37 37 H 0.97002 * 119.99687 * 359.97438 * 17 15 14 38 38 H 0.97002 * 119.99951 * 0.02562 * 18 17 15 39 39 H 1.07998 * 120.07836 * 359.97438 * 22 21 19 40 40 H 1.07995 * 119.93098 * 180.29418 * 23 22 21 41 41 H 1.07998 * 119.85064 * 179.69861 * 24 23 22 42 42 H 1.08994 * 109.47193 * 270.02791 * 26 25 24 43 43 H 1.09003 * 109.47011 * 30.02676 * 26 25 24 44 44 H 1.08995 * 109.47092 * 150.02501 * 26 25 24 45 45 H 1.07999 * 120.07105 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0331 5 6 1.5755 2.1396 1.2528 6 1 0.8873 2.9692 1.1857 7 6 2.0289 1.7180 2.4848 8 7 3.0071 0.8423 2.5610 9 14 1.2539 2.3909 4.0456 10 1 1.9152 1.7833 5.2283 11 1 1.4232 3.8656 4.0864 12 1 -0.1932 2.0579 4.0629 13 7 1.5141 2.1478 -1.1764 14 6 2.3724 1.9293 -2.3484 15 6 1.8516 2.7360 -3.5098 16 8 0.8632 3.4256 -3.3745 17 7 2.4849 2.6921 -4.6987 18 7 2.0005 3.4417 -5.7786 19 6 2.6341 3.3981 -6.9674 20 8 3.6256 2.7081 -7.1026 21 6 2.1226 4.1887 -8.1071 22 6 0.9802 4.9770 -7.9569 23 6 0.5117 5.7171 -9.0226 24 6 1.1645 5.6697 -10.2419 25 6 2.2937 4.8863 -10.3990 26 6 2.9977 4.8404 -11.7306 27 6 2.7763 4.1459 -9.3393 28 1 -0.3633 0.4427 -0.9275 29 1 -0.3634 -1.0245 0.0804 30 1 -0.3633 0.5819 0.8471 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3812 0.4612 1.7512 34 1 1.4035 3.1329 -0.9878 35 1 3.3906 2.2417 -2.1164 36 1 2.3678 0.8711 -2.6099 37 1 3.2762 2.1414 -4.8067 38 1 1.2095 3.9926 -5.6706 39 1 0.4669 5.0108 -7.0073 40 1 -0.3691 6.3310 -8.9065 41 1 0.7908 6.2473 -11.0745 42 1 2.5779 4.0372 -12.3361 43 1 2.8636 5.7917 -12.2455 44 1 4.0610 4.6591 -11.5734 45 1 3.6583 3.5350 -9.4632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:48 Heat of formation + Delta-G solvation = -20.382024 kcal Electronic energy + Delta-G solvation = -25544.912905 eV Core-core repulsion = 21756.257532 eV Total energy + Delta-G solvation = -3788.655373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82297 -39.66583 -38.59474 -36.45348 -35.41608 -33.59681 -32.84309 -31.94508 -31.10062 -30.54999 -27.48571 -27.01313 -24.84423 -23.90753 -23.41394 -22.33092 -21.49296 -20.58852 -19.33504 -18.28806 -17.91621 -17.26134 -16.59981 -15.90120 -15.87153 -15.69916 -15.14219 -15.06404 -14.53444 -14.19906 -14.17826 -13.99402 -13.75126 -13.57026 -13.49156 -13.12536 -12.70372 -12.49241 -12.23959 -12.08641 -11.98614 -11.67185 -11.54850 -11.38318 -11.16620 -10.79625 -10.55417 -10.21579 -10.12706 -10.10247 -9.83233 -9.74013 -9.46686 -9.21802 -8.62983 -8.50516 -8.28418 -7.50815 -6.40088 -4.10321 0.37573 0.87759 1.62179 2.31703 2.70465 3.39910 3.43018 3.46030 3.63604 3.74248 4.24573 4.27244 4.38942 4.49830 4.63049 4.78848 4.84256 4.90846 5.11672 5.12539 5.15905 5.27424 5.33656 5.47776 5.60891 5.63498 5.67064 5.80967 5.89451 6.04012 6.25394 6.38424 6.39531 6.46860 6.54476 6.58320 6.88532 6.99305 7.19382 7.33522 7.43036 7.52846 7.68300 7.78896 8.01359 8.25785 8.43650 8.52369 8.82372 9.59657 10.97495 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.002005 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.134983 B =13959.644953 C =14257.757382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.107 4.107 3 C 0.204 3.796 4 H -0.004 1.004 5 C -0.596 4.596 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.286 1.286 13 N -0.661 5.661 14 C 0.053 3.947 15 C 0.517 3.483 16 O -0.523 6.523 17 N -0.531 5.531 18 N -0.516 5.516 19 C 0.558 3.442 20 O -0.539 6.539 21 C -0.122 4.122 22 C -0.091 4.091 23 C -0.120 4.120 24 C -0.093 4.093 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.057 4.057 28 H 0.048 0.952 29 H 0.018 0.982 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.061 0.939 33 H 0.270 0.730 34 H 0.346 0.654 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.431 0.569 38 H 0.430 0.570 39 H 0.128 0.872 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 7.919 -26.617 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.146 4.146 3 C 0.097 3.903 4 H 0.014 0.986 5 C -0.635 4.635 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.544 5.544 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.295 5.295 14 C -0.081 4.081 15 C 0.304 3.696 16 O -0.396 6.396 17 N -0.282 5.282 18 N -0.263 5.263 19 C 0.346 3.654 20 O -0.416 6.416 21 C -0.127 4.127 22 C -0.110 4.110 23 C -0.138 4.138 24 C -0.111 4.111 25 C -0.095 4.095 26 C -0.172 4.172 27 C -0.076 4.076 28 H 0.067 0.933 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.165 0.835 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.273 0.727 38 H 0.274 0.726 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.885 7.366 -25.059 26.187 hybrid contribution 0.612 0.555 -1.468 1.684 sum -1.273 7.921 -26.526 27.713 Atomic orbital electron populations 1.21441 0.96362 0.97927 1.02167 1.21521 0.96460 0.98065 0.98514 1.19326 0.92353 0.91404 0.87247 0.98633 1.21921 1.31333 1.18715 0.91523 0.92608 1.25725 0.94713 0.95987 1.01634 1.70818 1.21913 1.28909 1.32713 0.83566 0.75816 0.75656 0.75449 1.20888 1.21539 1.21289 1.60452 1.48055 1.17424 1.03556 1.21785 0.96376 0.99746 0.90213 1.21473 0.83624 0.82573 0.81970 1.90701 1.25250 1.41005 1.82617 1.45206 1.32381 1.46868 1.03741 1.44714 1.31482 1.45838 1.04277 1.18356 0.83544 0.82265 0.81270 1.90799 1.25692 1.41937 1.83133 1.19607 0.98181 1.00986 0.93888 1.21375 0.94796 0.95327 0.99514 1.21125 1.00429 0.99510 0.92751 1.21310 0.94552 0.97692 0.97580 1.19931 0.96248 0.97186 0.96103 1.20817 1.00368 1.02789 0.93222 1.21141 0.99050 0.96858 0.90511 0.93292 0.96292 0.92045 0.96240 0.92090 0.91870 0.83454 0.92492 0.88271 0.72671 0.72620 0.85395 0.84993 0.85382 0.90819 0.91233 0.91127 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.52 37.16 0.35 -2.30 16 2 C -0.11 -2.44 5.49 -26.73 -0.15 -2.59 16 3 C 0.20 4.88 1.93 -68.86 -0.13 4.74 16 4 H 0.00 -0.10 7.09 -51.93 -0.37 -0.46 16 5 C -0.60 -15.95 7.24 -34.44 -0.25 -16.19 16 6 H 0.06 1.52 7.67 -52.49 -0.40 1.12 16 7 C 0.02 0.67 5.18 -17.82 -0.09 0.58 16 8 N -0.91 -26.24 13.04 55.43 0.72 -25.52 16 9 Si 1.07 24.70 29.91 -169.99 -5.09 19.62 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.66 -13.74 5.24 -109.22 -0.57 -14.31 16 14 C 0.05 0.87 6.01 -4.98 -0.03 0.84 16 15 C 0.52 8.09 7.98 -10.99 -0.09 8.00 16 16 O -0.52 -9.72 15.96 5.56 0.09 -9.63 16 17 N -0.53 -6.96 6.26 31.22 0.20 -6.76 16 18 N -0.52 -6.24 6.21 30.53 0.19 -6.06 16 19 C 0.56 6.82 7.89 -12.33 -0.10 6.72 16 20 O -0.54 -7.97 16.19 5.32 0.09 -7.89 16 21 C -0.12 -1.21 5.87 -104.97 -0.62 -1.82 16 22 C -0.09 -0.73 9.54 -39.18 -0.37 -1.10 16 23 C -0.12 -0.79 10.03 -39.64 -0.40 -1.18 16 24 C -0.09 -0.58 9.69 -39.49 -0.38 -0.96 16 25 C -0.09 -0.67 5.87 -104.68 -0.61 -1.28 16 26 C -0.12 -0.54 10.01 36.01 0.36 -0.18 16 27 C -0.06 -0.51 9.24 -39.19 -0.36 -0.87 16 28 H 0.05 1.04 7.70 -51.93 -0.40 0.64 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 1.45 7.13 -51.93 -0.37 1.08 16 31 H 0.02 0.39 7.62 -51.93 -0.40 0.00 16 32 H 0.06 1.53 6.38 -51.93 -0.33 1.19 16 33 H 0.27 7.74 6.04 -40.82 -0.25 7.49 16 34 H 0.35 7.54 7.80 -39.29 -0.31 7.24 16 35 H 0.06 0.88 7.97 -51.93 -0.41 0.47 16 36 H 0.10 1.51 7.61 -51.93 -0.40 1.11 16 37 H 0.43 5.08 8.00 -182.60 -1.46 3.62 16 38 H 0.43 4.73 6.04 -182.60 -1.10 3.63 16 39 H 0.13 0.85 6.41 -52.49 -0.34 0.51 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 41 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 44 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 45 H 0.14 1.24 7.65 -52.49 -0.40 0.84 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -32.66 375.28 -9.84 -42.51 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -8.26 Total: 9.98 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -2.87 Total: -7.60 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.54 Total: -52.65 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.09 Total: 19.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.66 -9.84 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.127 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds