Wall clock time and date at job start Tue Mar 31 2020 13:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 H 1.08997 * 109.47305 * 181.84575 * 3 2 1 5 5 C 1.50708 * 109.47142 * 61.85113 * 3 2 1 6 6 H 1.07998 * 120.00178 * 244.99063 * 5 3 2 7 7 C 1.37880 * 119.99942 * 64.98326 * 5 3 2 8 8 N 1.31513 * 119.99957 * 9.79837 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 189.79590 * 7 5 3 10 10 H 1.48506 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47244 * 299.99987 * 9 7 5 12 12 H 1.48500 * 109.46816 * 60.00610 * 9 7 5 13 13 N 1.46896 * 109.47300 * 301.85313 * 3 2 1 14 14 C 1.46900 * 110.99839 * 274.23412 * 13 3 2 15 15 C 1.50696 * 109.47165 * 183.56133 * 14 13 3 16 16 O 1.21278 * 120.00424 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00077 * 179.97438 * 15 14 13 18 18 N 1.40096 * 120.00361 * 179.97438 * 17 15 14 19 19 C 1.34779 * 120.00361 * 179.97438 * 18 17 15 20 20 O 1.21556 * 119.99559 * 0.02562 * 19 18 17 21 21 C 1.47842 * 120.00130 * 179.97438 * 19 18 17 22 22 C 1.39598 * 120.14229 * 359.72865 * 21 19 18 23 23 C 1.37943 * 119.85144 * 179.69941 * 22 21 19 24 24 C 1.38385 * 120.14054 * 0.59498 * 23 22 21 25 25 C 1.38334 * 120.29472 * 359.67482 * 24 23 22 26 26 C 1.50703 * 119.92917 * 179.97438 * 25 24 23 27 27 C 1.37981 * 120.14607 * 0.02562 * 25 24 23 28 28 H 1.09005 * 109.46996 * 64.48620 * 1 2 3 29 29 H 1.09002 * 109.47231 * 184.48592 * 1 2 3 30 30 H 1.08999 * 109.46877 * 304.48761 * 1 2 3 31 31 H 1.08998 * 109.46901 * 240.00272 * 2 1 3 32 32 H 1.09000 * 109.47196 * 119.99665 * 2 1 3 33 33 H 0.97004 * 120.00255 * 357.09370 * 8 7 5 34 34 H 1.00899 * 111.00000 * 150.28100 * 13 3 2 35 35 H 1.09004 * 109.47078 * 303.56314 * 14 13 3 36 36 H 1.09000 * 109.47620 * 63.55708 * 14 13 3 37 37 H 0.97002 * 119.99687 * 359.97438 * 17 15 14 38 38 H 0.97002 * 119.99951 * 0.02562 * 18 17 15 39 39 H 1.07998 * 120.07836 * 359.97438 * 22 21 19 40 40 H 1.07995 * 119.93098 * 180.29418 * 23 22 21 41 41 H 1.07998 * 119.85064 * 179.69861 * 24 23 22 42 42 H 1.08994 * 109.47193 * 270.02791 * 26 25 24 43 43 H 1.09003 * 109.47011 * 30.02676 * 26 25 24 44 44 H 1.08995 * 109.47092 * 150.02501 * 26 25 24 45 45 H 1.07999 * 120.07105 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0331 5 6 1.5755 2.1396 1.2528 6 1 0.8873 2.9692 1.1857 7 6 2.0289 1.7180 2.4848 8 7 3.0071 0.8423 2.5610 9 14 1.2539 2.3909 4.0456 10 1 1.9152 1.7833 5.2283 11 1 1.4232 3.8656 4.0864 12 1 -0.1932 2.0579 4.0629 13 7 1.5141 2.1478 -1.1764 14 6 2.3724 1.9293 -2.3484 15 6 1.8516 2.7360 -3.5098 16 8 0.8632 3.4256 -3.3745 17 7 2.4849 2.6921 -4.6987 18 7 2.0005 3.4417 -5.7786 19 6 2.6341 3.3981 -6.9674 20 8 3.6256 2.7081 -7.1026 21 6 2.1226 4.1887 -8.1071 22 6 0.9802 4.9770 -7.9569 23 6 0.5117 5.7171 -9.0226 24 6 1.1645 5.6697 -10.2419 25 6 2.2937 4.8863 -10.3990 26 6 2.9977 4.8404 -11.7306 27 6 2.7763 4.1459 -9.3393 28 1 -0.3633 0.4427 -0.9275 29 1 -0.3634 -1.0245 0.0804 30 1 -0.3633 0.5819 0.8471 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.3812 0.4612 1.7512 34 1 1.4035 3.1329 -0.9878 35 1 3.3906 2.2417 -2.1164 36 1 2.3678 0.8711 -2.6099 37 1 3.2762 2.1414 -4.8067 38 1 1.2095 3.9926 -5.6706 39 1 0.4669 5.0108 -7.0073 40 1 -0.3691 6.3310 -8.9065 41 1 0.7908 6.2473 -11.0745 42 1 2.5779 4.0372 -12.3361 43 1 2.8636 5.7917 -12.2455 44 1 4.0610 4.6591 -11.5734 45 1 3.6583 3.5350 -9.4632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846984321.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:48 Heat of formation + Delta-G solvation = -42.489587 kcal Electronic energy + Delta-G solvation = -25545.871560 eV Core-core repulsion = 21756.257532 eV Total energy + Delta-G solvation = -3789.614029 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79259 -40.69094 -39.48691 -38.19655 -36.59026 -34.67295 -34.21352 -32.92409 -32.50460 -31.68397 -28.82159 -27.79466 -26.40426 -25.36788 -24.82972 -22.97568 -22.53514 -21.66666 -21.09032 -19.49725 -19.06403 -18.63723 -17.61094 -17.14245 -16.88290 -16.50005 -16.32746 -16.03940 -15.83697 -15.68005 -15.52418 -15.15791 -14.88087 -14.78952 -14.58742 -14.07596 -13.88274 -13.63277 -13.49443 -13.10322 -13.08863 -12.98126 -12.63027 -12.62108 -12.55221 -12.07092 -12.00040 -11.95401 -11.89312 -11.61305 -11.56839 -11.17351 -10.63507 -10.33775 -10.10291 -9.77834 -9.57009 -9.19735 -8.56815 -6.26859 -0.29332 0.32060 0.56455 1.24883 1.55996 1.62651 1.68769 1.81575 2.57548 2.73168 2.75998 3.22694 3.30716 3.52126 3.73927 3.76958 3.89769 4.11766 4.27105 4.29952 4.32143 4.33995 4.46715 4.57059 4.60372 4.76195 4.82572 4.85628 4.94300 5.02349 5.18747 5.20168 5.24543 5.34450 5.37003 5.37616 5.49974 5.53032 5.58723 5.71532 5.87450 5.89222 6.07506 6.27651 6.47806 6.55981 6.63859 6.76465 7.12794 7.49921 8.81597 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031203 B = 0.002005 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.134983 B =13959.644953 C =14257.757382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C 0.208 3.792 4 H -0.025 1.025 5 C -0.602 4.602 6 H 0.046 0.954 7 C -0.021 4.021 8 N -0.932 5.932 9 Si 1.108 2.892 10 H -0.286 1.286 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.664 5.664 14 C 0.052 3.948 15 C 0.526 3.474 16 O -0.554 6.554 17 N -0.520 5.520 18 N -0.514 5.514 19 C 0.560 3.440 20 O -0.570 6.570 21 C -0.143 4.143 22 C -0.096 4.096 23 C -0.120 4.120 24 C -0.087 4.087 25 C -0.098 4.098 26 C -0.115 4.115 27 C -0.072 4.072 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.261 0.739 34 H 0.338 0.662 35 H 0.070 0.930 36 H 0.116 0.884 37 H 0.438 0.562 38 H 0.436 0.564 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 8.975 -28.561 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.141 4.141 3 C 0.100 3.900 4 H -0.007 1.007 5 C -0.640 4.640 6 H 0.065 0.935 7 C -0.221 4.221 8 N -0.569 5.569 9 Si 0.931 3.069 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.200 1.200 13 N -0.296 5.296 14 C -0.081 4.081 15 C 0.313 3.687 16 O -0.429 6.429 17 N -0.270 5.270 18 N -0.262 5.262 19 C 0.350 3.650 20 O -0.449 6.449 21 C -0.148 4.148 22 C -0.115 4.115 23 C -0.138 4.138 24 C -0.105 4.105 25 C -0.098 4.098 26 C -0.171 4.171 27 C -0.092 4.092 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.134 0.866 37 H 0.282 0.718 38 H 0.281 0.719 39 H 0.155 0.845 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.068 8.422 -27.048 28.495 hybrid contribution 0.997 0.271 -1.037 1.464 sum -2.071 8.693 -28.085 29.472 Atomic orbital electron populations 1.21329 0.95388 0.98942 1.01262 1.21424 0.97200 0.97156 0.98359 1.19157 0.91044 0.92191 0.87629 1.00708 1.22193 1.30529 1.18367 0.92919 0.93545 1.26927 0.94575 0.95842 1.04724 1.70918 1.23326 1.30369 1.32275 0.83030 0.75636 0.75912 0.72339 1.21201 1.20020 1.19995 1.60342 1.49021 1.16581 1.03650 1.21815 0.96244 1.01029 0.89056 1.21105 0.83173 0.82075 0.82348 1.90692 1.26656 1.42401 1.83176 1.44958 1.32059 1.46443 1.03588 1.44833 1.31746 1.45757 1.03832 1.18825 0.82917 0.81786 0.81516 1.90773 1.27119 1.43422 1.83624 1.19537 0.99688 1.02304 0.93253 1.21548 0.94187 0.95144 1.00620 1.21484 1.01021 0.99010 0.92291 1.21717 0.93621 0.96818 0.98347 1.20222 0.96634 0.96585 0.96395 1.20874 1.00070 1.04036 0.92169 1.21216 0.99170 0.97701 0.91075 0.92812 0.94059 0.94438 0.93902 0.94640 0.92865 0.84348 0.91229 0.86597 0.71813 0.71946 0.84514 0.82405 0.82416 0.90056 0.89490 0.91311 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.76 9.52 71.98 0.69 -4.08 16 2 C -0.10 -4.65 5.49 30.59 0.17 -4.48 16 3 C 0.21 9.99 1.93 44.17 0.09 10.07 16 4 H -0.02 -1.26 7.09 -2.39 -0.02 -1.28 16 5 C -0.60 -32.47 7.24 25.60 0.19 -32.28 16 6 H 0.05 2.55 7.67 -2.91 -0.02 2.52 16 7 C -0.02 -1.16 5.18 84.66 0.44 -0.73 16 8 N -0.93 -54.64 13.04 21.45 0.28 -54.36 16 9 Si 1.11 49.74 29.91 68.60 2.05 51.80 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 13 N -0.66 -27.40 5.24 -499.46 -2.62 -30.02 16 14 C 0.05 1.68 6.01 85.56 0.51 2.19 16 15 C 0.53 16.10 7.98 87.66 0.70 16.79 16 16 O -0.55 -20.31 15.96 -3.02 -0.05 -20.36 16 17 N -0.52 -13.33 6.26 -173.53 -1.09 -14.41 16 18 N -0.51 -12.24 6.21 -175.60 -1.09 -13.33 16 19 C 0.56 13.74 7.89 86.78 0.68 14.42 16 20 O -0.57 -17.19 16.19 -3.89 -0.06 -17.25 16 21 C -0.14 -2.79 5.87 -20.09 -0.12 -2.91 16 22 C -0.10 -1.40 9.54 22.53 0.21 -1.19 16 23 C -0.12 -1.25 10.03 22.23 0.22 -1.03 16 24 C -0.09 -0.82 9.69 22.33 0.22 -0.61 16 25 C -0.10 -1.22 5.87 -19.90 -0.12 -1.34 16 26 C -0.12 -0.85 10.01 71.24 0.71 -0.14 16 27 C -0.07 -1.29 9.24 22.53 0.21 -1.08 16 28 H 0.05 2.21 7.70 -2.38 -0.02 2.19 16 29 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.75 7.13 -2.39 -0.02 1.73 16 31 H 0.04 1.71 7.62 -2.39 -0.02 1.69 16 32 H 0.03 1.78 6.38 -2.39 -0.02 1.76 16 33 H 0.26 15.32 6.04 -92.70 -0.56 14.76 16 34 H 0.34 14.82 7.80 -89.69 -0.70 14.13 16 35 H 0.07 2.10 7.97 -2.38 -0.02 2.08 16 36 H 0.12 3.34 7.61 -2.39 -0.02 3.32 16 37 H 0.44 10.07 8.00 -213.32 -1.71 8.36 16 38 H 0.44 9.35 6.04 -213.32 -1.29 8.06 16 39 H 0.14 1.65 6.41 -2.91 -0.02 1.63 16 40 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 41 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.09 0.35 8.08 -2.39 -0.02 0.33 16 44 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 45 H 0.13 2.42 7.65 -2.91 -0.02 2.39 16 Total: -1.00 -70.71 375.28 -0.21 -70.93 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -2.44 Total: 33.38 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.80 Total: -6.37 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -4.51 Total: -112.12 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.11 Total: -37.61 kcal Atomic # 14 Polarization: 49.74 SS G_CDS: 2.05 Total: 51.80 kcal Total: -70.71 -0.21 -70.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984321.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.438 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds