Wall clock time and date at job start Tue Mar 31 2020 13:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 H 1.09002 * 109.55323 * 55.12538 * 3 2 1 5 5 C 1.53714 * 109.44418 * 175.38841 * 3 2 1 6 6 N 1.47145 * 108.16142 * 172.37357 * 5 3 2 7 7 C 1.34777 * 120.98172 * 129.43451 * 6 5 3 8 8 O 1.21576 * 120.00125 * 354.72333 * 7 6 5 9 9 N 1.34784 * 120.00233 * 174.73484 * 7 6 5 10 10 C 1.39454 * 120.00048 * 185.63315 * 9 7 6 11 11 C 1.38650 * 119.64841 * 17.96448 * 10 9 7 12 12 C 1.40819 * 118.67334 * 180.02562 * 11 10 9 13 13 C 1.41542 * 120.99947 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99739 * 26.86000 * 13 12 11 15 15 C 1.40032 * 120.00465 * 206.85867 * 13 12 11 16 16 N 1.30747 * 119.99620 * 7.94714 * 15 13 12 17 17 Si 1.86796 * 120.00154 * 187.94942 * 15 13 12 18 18 H 1.48494 * 109.47408 * 59.99754 * 17 15 13 19 19 H 1.48503 * 109.47056 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46995 * 299.99843 * 17 15 13 21 21 C 1.41171 * 118.00462 * 359.97438 * 12 11 10 22 22 C 1.36588 * 119.12850 * 0.25334 * 21 12 11 23 23 N 1.32070 * 121.25592 * 359.47748 * 22 21 12 24 24 C 1.47154 * 118.03873 * 309.15721 * 6 5 3 25 25 C 1.53296 * 108.38284 * 50.78759 * 24 6 5 26 26 H 1.08997 * 109.51308 * 187.77813 * 25 24 6 27 27 C 1.52997 * 109.51373 * 67.62156 * 25 24 6 28 28 O 1.42961 * 109.21993 * 307.69739 * 25 24 6 29 29 H 1.09007 * 109.47152 * 60.00275 * 1 2 3 30 30 H 1.09004 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47550 * 300.00273 * 1 2 3 32 32 H 1.09003 * 109.47016 * 240.00177 * 2 1 3 33 33 H 1.08993 * 109.47428 * 120.00188 * 2 1 3 34 34 H 1.09004 * 109.83616 * 52.69380 * 5 3 2 35 35 H 1.08998 * 109.74520 * 291.99916 * 5 3 2 36 36 H 0.97005 * 119.99562 * 5.62310 * 9 7 6 37 37 H 1.08000 * 120.66333 * 0.04536 * 11 10 9 38 38 H 0.96999 * 119.99444 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.43132 * 179.97438 * 21 12 11 40 40 H 1.07996 * 119.36902 * 179.74690 * 22 21 12 41 41 H 1.09004 * 109.68545 * 170.50736 * 24 6 5 42 42 H 1.09004 * 109.68332 * 291.06547 * 24 6 5 43 43 H 1.08997 * 109.46912 * 60.00377 * 27 25 24 44 44 H 1.09002 * 109.47169 * 179.97438 * 27 25 24 45 45 H 1.08993 * 109.47269 * 300.00207 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6078 1.9822 0.8427 5 6 3.5727 1.4433 0.1165 6 7 4.0461 2.8239 -0.0707 7 6 4.8953 3.3914 0.8087 8 8 5.2062 2.7980 1.8232 9 7 5.3996 4.6171 0.5636 10 6 6.3669 5.1554 1.4117 11 6 7.0739 4.3203 2.2633 12 6 8.0455 4.8858 3.1113 13 6 8.7962 4.0791 3.9996 14 1 8.9702 3.0386 3.7681 15 6 9.3132 4.6299 5.1787 16 7 8.9754 5.8410 5.5373 17 14 10.4854 3.6345 6.2390 18 1 11.6920 3.2836 5.4478 19 1 10.8851 4.4372 7.4227 20 1 9.8103 2.3910 6.6900 21 6 8.2492 6.2813 3.0481 22 6 7.5006 7.0238 2.1798 23 7 6.6009 6.4594 1.3949 24 6 3.5701 3.5645 -1.2499 25 6 2.0417 3.4585 -1.3027 26 1 1.6796 3.8811 -2.2399 27 6 1.4352 4.2263 -0.1265 28 8 1.6623 2.0826 -1.2213 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0024 0.8005 -0.6517 35 1 3.8672 1.0849 1.1029 36 1 5.0898 5.1246 -0.2028 37 1 6.8834 3.2573 2.2757 38 1 9.3333 6.2224 6.3542 39 1 8.9842 6.7561 3.6812 40 1 7.6504 8.0922 2.1312 41 1 3.8629 4.6113 -1.1688 42 1 3.9995 3.1315 -2.1534 43 1 1.7286 5.2743 -0.1868 44 1 0.3485 4.1509 -0.1650 45 1 1.7964 3.8012 0.8099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871722134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:05 Heat of formation + Delta-G solvation = -29.086794 kcal Electronic energy + Delta-G solvation = -27278.406707 eV Core-core repulsion = 23489.373867 eV Total energy + Delta-G solvation = -3789.032840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82105 -39.27341 -37.83359 -35.07834 -34.62176 -34.29156 -33.47188 -31.35179 -30.57903 -29.25345 -28.06109 -26.51086 -25.87208 -24.29617 -22.51322 -21.92964 -21.30993 -20.43403 -19.27706 -18.33563 -17.70312 -16.84305 -16.12135 -16.08586 -15.43094 -15.18631 -14.88881 -14.68418 -14.43867 -14.31306 -14.04387 -13.78122 -13.73946 -13.40258 -12.91907 -12.54593 -12.43044 -12.31355 -12.24488 -12.09608 -12.06330 -11.41756 -11.36632 -11.32768 -11.17543 -11.16474 -11.03365 -10.59737 -10.42294 -10.16974 -10.04308 -9.83547 -9.33988 -9.11864 -8.51680 -8.03798 -7.89850 -7.00225 -6.70381 -4.53746 2.58483 2.75563 2.83290 3.06110 3.09827 3.22730 3.47321 3.62080 3.91458 4.00384 4.42670 4.55186 4.72455 4.74148 4.80033 4.87285 4.94664 5.07024 5.14679 5.28141 5.40620 5.50159 5.50952 5.63085 5.68489 5.73507 5.74739 5.79278 5.90932 5.93392 6.01571 6.10967 6.29189 6.58948 6.64508 6.97931 6.98395 7.04806 7.12822 7.27627 7.52974 7.59016 8.00401 8.08480 8.23624 8.58822 8.78676 8.84621 8.93640 9.57067 10.17740 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.003145 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.888182 B = 8900.072515 C = 9978.565706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C 0.073 3.927 4 H 0.069 0.931 5 C 0.103 3.897 6 N -0.632 5.632 7 C 0.709 3.291 8 O -0.555 6.555 9 N -0.662 5.662 10 C 0.348 3.652 11 C -0.271 4.271 12 C 0.136 3.864 13 C -0.447 4.447 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.795 5.795 17 Si 0.917 3.083 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.264 1.264 21 C -0.222 4.222 22 C 0.102 3.898 23 N -0.603 5.603 24 C 0.080 3.920 25 C 0.077 3.923 26 H 0.113 0.887 27 C -0.186 4.186 28 O -0.370 6.370 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.104 0.896 36 H 0.396 0.604 37 H 0.140 0.860 38 H 0.281 0.719 39 H 0.133 0.867 40 H 0.123 0.877 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 -6.258 -11.410 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C 0.014 3.986 4 H 0.087 0.913 5 C -0.021 4.021 6 N -0.372 5.372 7 C 0.411 3.589 8 O -0.430 6.430 9 N -0.311 5.311 10 C 0.123 3.877 11 C -0.297 4.297 12 C 0.128 3.872 13 C -0.479 4.479 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.422 5.422 17 Si 0.741 3.259 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.245 4.245 22 C -0.048 4.048 23 N -0.324 5.324 24 C -0.044 4.044 25 C 0.019 3.981 26 H 0.131 0.869 27 C -0.243 4.243 28 O -0.289 6.289 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.232 0.768 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.228 -6.094 -11.200 18.372 hybrid contribution 0.927 -0.231 0.902 1.314 sum -12.301 -6.325 -10.298 17.244 Atomic orbital electron populations 1.21693 0.95061 1.01510 1.02269 1.21499 0.96852 0.93771 1.03094 1.22685 0.93446 0.94442 0.87998 0.91310 1.22248 0.93680 0.81809 1.04335 1.47249 1.49443 1.14960 1.25544 1.15634 0.79093 0.81342 0.82855 1.90895 1.62414 1.63628 1.26058 1.42369 1.42040 1.16644 1.30032 1.17640 0.89059 0.89470 0.91519 1.22315 1.01105 1.01317 1.04926 1.17812 0.88122 0.92188 0.89116 1.19568 1.27878 0.97632 1.02809 0.90216 1.25967 0.95235 0.95056 0.98154 1.69738 1.35790 1.14677 1.21946 0.86225 0.80579 0.80252 0.78825 1.18786 1.20258 1.18871 1.22089 1.04328 0.95573 1.02527 1.21373 0.92765 0.97875 0.92830 1.66533 1.25184 1.10154 1.30529 1.22368 0.95221 0.97557 0.89233 1.22535 0.92903 0.82750 0.99942 0.86919 1.22397 1.01533 1.01026 0.99360 1.87981 1.79789 1.22993 1.38111 0.91990 0.92721 0.92914 0.90903 0.90185 0.90988 0.87776 0.76777 0.84315 0.90750 0.84930 0.85928 0.89448 0.90441 0.91247 0.91652 0.91698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.15 0.36 -0.80 16 2 C -0.11 -0.97 5.65 -26.73 -0.15 -1.12 16 3 C 0.07 0.76 2.41 -26.36 -0.06 0.70 16 4 H 0.07 0.79 6.25 -51.93 -0.32 0.46 16 5 C 0.10 1.26 5.97 -3.32 -0.02 1.24 16 6 N -0.63 -8.85 2.53 -177.75 -0.45 -9.30 16 7 C 0.71 13.41 8.16 -86.91 -0.71 12.70 16 8 O -0.55 -12.77 12.59 5.30 0.07 -12.71 16 9 N -0.66 -12.83 5.33 -15.86 -0.08 -12.92 16 10 C 0.35 8.45 7.52 -154.68 -1.16 7.29 16 11 C -0.27 -7.27 8.62 -38.45 -0.33 -7.60 16 12 C 0.14 3.80 5.60 -106.55 -0.60 3.20 16 13 C -0.45 -12.27 9.14 -37.65 -0.34 -12.61 16 14 H 0.08 2.12 7.86 -52.49 -0.41 1.71 16 15 C 0.07 1.88 5.34 -17.34 -0.09 1.79 16 16 N -0.80 -20.67 10.65 55.55 0.59 -20.08 16 17 Si 0.92 18.97 29.57 -169.99 -5.03 13.95 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 C -0.22 -5.87 8.73 -39.07 -0.34 -6.21 16 22 C 0.10 2.48 11.10 -18.05 -0.20 2.28 16 23 N -0.60 -14.63 10.36 -12.76 -0.13 -14.77 16 24 C 0.08 0.84 5.95 -3.53 -0.02 0.82 16 25 C 0.08 0.72 3.93 -26.58 -0.10 0.62 16 26 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 27 C -0.19 -1.85 8.81 37.16 0.33 -1.52 16 28 O -0.37 -3.90 9.76 -35.23 -0.34 -4.25 16 29 H 0.06 0.52 7.83 -51.93 -0.41 0.12 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.44 7.06 -51.93 -0.37 1.08 16 36 H 0.40 6.34 6.37 -40.82 -0.26 6.08 16 37 H 0.14 3.82 5.29 -52.54 -0.28 3.55 16 38 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 39 H 0.13 3.54 6.08 -52.48 -0.32 3.22 16 40 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 41 H 0.09 0.85 5.76 -51.93 -0.30 0.55 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.80 6.11 -51.93 -0.32 0.48 16 LS Contribution 357.09 15.07 5.38 5.38 Total: -1.00 -31.81 357.09 -9.79 -41.60 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.35 Total: 12.32 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -3.45 Total: 0.77 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: -0.08 Total: -57.06 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.28 Total: -16.96 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.81 -9.79 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.512 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds