Wall clock time and date at job start Tue Mar 31 2020 13:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47174 * 2 1 4 4 H 1.09002 * 109.55323 * 55.12538 * 3 2 1 5 5 C 1.53714 * 109.44418 * 175.38841 * 3 2 1 6 6 N 1.47145 * 108.16142 * 172.37357 * 5 3 2 7 7 C 1.34777 * 120.98172 * 129.43451 * 6 5 3 8 8 O 1.21576 * 120.00125 * 354.72333 * 7 6 5 9 9 N 1.34784 * 120.00233 * 174.73484 * 7 6 5 10 10 C 1.39454 * 120.00048 * 185.63315 * 9 7 6 11 11 C 1.38650 * 119.64841 * 17.96448 * 10 9 7 12 12 C 1.40819 * 118.67334 * 180.02562 * 11 10 9 13 13 C 1.41542 * 120.99947 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99739 * 26.86000 * 13 12 11 15 15 C 1.40032 * 120.00465 * 206.85867 * 13 12 11 16 16 N 1.30747 * 119.99620 * 7.94714 * 15 13 12 17 17 Si 1.86796 * 120.00154 * 187.94942 * 15 13 12 18 18 H 1.48494 * 109.47408 * 59.99754 * 17 15 13 19 19 H 1.48503 * 109.47056 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.46995 * 299.99843 * 17 15 13 21 21 C 1.41171 * 118.00462 * 359.97438 * 12 11 10 22 22 C 1.36588 * 119.12850 * 0.25334 * 21 12 11 23 23 N 1.32070 * 121.25592 * 359.47748 * 22 21 12 24 24 C 1.47154 * 118.03873 * 309.15721 * 6 5 3 25 25 C 1.53296 * 108.38284 * 50.78759 * 24 6 5 26 26 H 1.08997 * 109.51308 * 187.77813 * 25 24 6 27 27 C 1.52997 * 109.51373 * 67.62156 * 25 24 6 28 28 O 1.42961 * 109.21993 * 307.69739 * 25 24 6 29 29 H 1.09007 * 109.47152 * 60.00275 * 1 2 3 30 30 H 1.09004 * 109.47290 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47550 * 300.00273 * 1 2 3 32 32 H 1.09003 * 109.47016 * 240.00177 * 2 1 3 33 33 H 1.08993 * 109.47428 * 120.00188 * 2 1 3 34 34 H 1.09004 * 109.83616 * 52.69380 * 5 3 2 35 35 H 1.08998 * 109.74520 * 291.99916 * 5 3 2 36 36 H 0.97005 * 119.99562 * 5.62310 * 9 7 6 37 37 H 1.08000 * 120.66333 * 0.04536 * 11 10 9 38 38 H 0.96999 * 119.99444 * 179.97438 * 16 15 13 39 39 H 1.08005 * 120.43132 * 179.97438 * 21 12 11 40 40 H 1.07996 * 119.36902 * 179.74690 * 22 21 12 41 41 H 1.09004 * 109.68545 * 170.50736 * 24 6 5 42 42 H 1.09004 * 109.68332 * 291.06547 * 24 6 5 43 43 H 1.08997 * 109.46912 * 60.00377 * 27 25 24 44 44 H 1.09002 * 109.47169 * 179.97438 * 27 25 24 45 45 H 1.08993 * 109.47269 * 300.00207 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6078 1.9822 0.8427 5 6 3.5727 1.4433 0.1165 6 7 4.0461 2.8239 -0.0707 7 6 4.8953 3.3914 0.8087 8 8 5.2062 2.7980 1.8232 9 7 5.3996 4.6171 0.5636 10 6 6.3669 5.1554 1.4117 11 6 7.0739 4.3203 2.2633 12 6 8.0455 4.8858 3.1113 13 6 8.7962 4.0791 3.9996 14 1 8.9702 3.0386 3.7681 15 6 9.3132 4.6299 5.1787 16 7 8.9754 5.8410 5.5373 17 14 10.4854 3.6345 6.2390 18 1 11.6920 3.2836 5.4478 19 1 10.8851 4.4372 7.4227 20 1 9.8103 2.3910 6.6900 21 6 8.2492 6.2813 3.0481 22 6 7.5006 7.0238 2.1798 23 7 6.6009 6.4594 1.3949 24 6 3.5701 3.5645 -1.2499 25 6 2.0417 3.4585 -1.3027 26 1 1.6796 3.8811 -2.2399 27 6 1.4352 4.2263 -0.1265 28 8 1.6623 2.0826 -1.2213 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 4.0024 0.8005 -0.6517 35 1 3.8672 1.0849 1.1029 36 1 5.0898 5.1246 -0.2028 37 1 6.8834 3.2573 2.2757 38 1 9.3333 6.2224 6.3542 39 1 8.9842 6.7561 3.6812 40 1 7.6504 8.0922 2.1312 41 1 3.8629 4.6113 -1.1688 42 1 3.9995 3.1315 -2.1534 43 1 1.7286 5.2743 -0.1868 44 1 0.3485 4.1509 -0.1650 45 1 1.7964 3.8012 0.8099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871722134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:04 Heat of formation + Delta-G solvation = -48.336775 kcal Electronic energy + Delta-G solvation = -27279.241449 eV Core-core repulsion = 23489.373867 eV Total energy + Delta-G solvation = -3789.867582 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12902 -40.63972 -39.50658 -36.47475 -36.12443 -35.38038 -35.09711 -32.58659 -32.15669 -30.74243 -29.32934 -27.92004 -27.50155 -25.31534 -23.90069 -23.33723 -22.97618 -21.63493 -20.46991 -19.92262 -19.26569 -18.03132 -17.55573 -17.35721 -16.99601 -16.49919 -16.26250 -16.12833 -15.96370 -15.62071 -15.17563 -15.07975 -14.74479 -14.58594 -14.50579 -14.30330 -14.12449 -13.28448 -13.24480 -13.17268 -13.05146 -12.94643 -12.87315 -12.78797 -12.26592 -12.19241 -12.05907 -11.91334 -11.85966 -11.62110 -11.47907 -11.20606 -11.09266 -10.85198 -10.03295 -9.92652 -9.65035 -8.87658 -8.63194 -6.60480 0.81656 0.90630 1.28414 1.36673 1.49411 1.52228 2.01092 2.18584 2.64558 2.68751 2.77225 3.56726 3.70304 3.72867 3.90790 3.94561 4.04000 4.09377 4.19954 4.31405 4.35402 4.44292 4.55501 4.66112 4.73749 4.75701 4.80391 4.81933 4.88339 4.98343 5.00465 5.09722 5.12896 5.17682 5.23749 5.25539 5.34556 5.45412 5.52837 5.56194 5.74041 6.01939 6.15879 6.18628 6.48588 6.70942 6.79228 6.82828 7.38158 7.61239 8.26923 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.003145 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.888182 B = 8900.072515 C = 9978.565706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C 0.081 3.919 4 H 0.056 0.944 5 C 0.098 3.902 6 N -0.621 5.621 7 C 0.705 3.295 8 O -0.602 6.602 9 N -0.652 5.652 10 C 0.357 3.643 11 C -0.302 4.302 12 C 0.109 3.891 13 C -0.485 4.485 14 H 0.072 0.928 15 C 0.035 3.965 16 N -0.819 5.819 17 Si 0.992 3.008 18 H -0.256 1.256 19 H -0.260 1.260 20 H -0.264 1.264 21 C -0.243 4.243 22 C 0.107 3.893 23 N -0.599 5.599 24 C 0.073 3.927 25 C 0.080 3.920 26 H 0.148 0.852 27 C -0.184 4.184 28 O -0.371 6.371 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.414 0.586 37 H 0.124 0.876 38 H 0.292 0.708 39 H 0.126 0.874 40 H 0.159 0.841 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 -6.243 -12.698 19.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C 0.023 3.977 4 H 0.074 0.926 5 C -0.024 4.024 6 N -0.359 5.359 7 C 0.407 3.593 8 O -0.481 6.481 9 N -0.302 5.302 10 C 0.130 3.870 11 C -0.327 4.327 12 C 0.101 3.899 13 C -0.516 4.516 14 H 0.090 0.910 15 C -0.181 4.181 16 N -0.445 5.445 17 Si 0.812 3.188 18 H -0.180 1.180 19 H -0.184 1.184 20 H -0.189 1.189 21 C -0.267 4.267 22 C -0.044 4.044 23 N -0.320 5.320 24 C -0.050 4.050 25 C 0.021 3.979 26 H 0.165 0.835 27 C -0.241 4.241 28 O -0.290 6.290 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.253 0.747 37 H 0.142 0.858 38 H 0.103 0.897 39 H 0.144 0.856 40 H 0.177 0.823 41 H 0.114 0.886 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.091 -6.072 -12.566 19.832 hybrid contribution 1.061 -0.218 1.218 1.630 sum -13.029 -6.290 -11.348 18.388 Atomic orbital electron populations 1.21662 0.94381 1.02289 1.01851 1.21524 0.97367 0.92356 1.03769 1.22599 0.91684 0.95658 0.87800 0.92613 1.22436 0.95279 0.80970 1.03764 1.47282 1.47652 1.15565 1.25365 1.15839 0.79522 0.80894 0.83055 1.90864 1.64214 1.64568 1.28405 1.42156 1.41130 1.17071 1.29890 1.17781 0.88935 0.89285 0.91027 1.22313 1.02486 1.01097 1.06837 1.18201 0.88687 0.93297 0.89746 1.19823 1.29775 0.97656 1.04390 0.90960 1.26863 0.96308 0.96227 0.98722 1.69772 1.36109 1.15900 1.22682 0.85105 0.78016 0.78482 0.77189 1.18006 1.18383 1.18883 1.22077 1.05507 0.95246 1.03848 1.21896 0.91575 0.99430 0.91496 1.66746 1.25113 1.09737 1.30448 1.22733 0.96320 0.97762 0.88155 1.22716 0.91765 0.82251 1.01122 0.83515 1.22385 1.02217 1.01249 0.98249 1.87993 1.79635 1.23584 1.37746 0.92380 0.91376 0.93317 0.90067 0.89711 0.89301 0.89941 0.74664 0.85849 0.89662 0.85631 0.82343 0.88637 0.88308 0.90653 0.90621 0.94610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.81 71.98 0.71 -1.34 16 2 C -0.11 -1.75 5.65 30.59 0.17 -1.58 16 3 C 0.08 1.63 2.41 30.84 0.07 1.70 16 4 H 0.06 1.28 6.25 -2.39 -0.01 1.26 16 5 C 0.10 2.39 5.97 86.50 0.52 2.91 16 6 N -0.62 -17.04 2.53 -834.53 -2.11 -19.15 16 7 C 0.71 27.17 8.16 179.05 1.46 28.63 16 8 O -0.60 -29.12 12.59 -3.95 -0.05 -29.17 16 9 N -0.65 -25.25 5.33 -322.36 -1.72 -26.97 16 10 C 0.36 17.56 7.52 132.77 1.00 18.56 16 11 C -0.30 -16.91 8.62 23.00 0.20 -16.71 16 12 C 0.11 6.35 5.60 -21.11 -0.12 6.23 16 13 C -0.49 -27.78 9.14 23.52 0.21 -27.57 16 14 H 0.07 4.07 7.86 -2.91 -0.02 4.05 16 15 C 0.03 1.79 5.34 85.29 0.46 2.25 16 16 N -0.82 -43.08 10.65 21.84 0.23 -42.85 16 17 Si 0.99 39.05 29.57 68.60 2.03 41.08 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 C -0.24 -13.19 8.73 22.60 0.20 -12.99 16 22 C 0.11 5.16 11.10 84.27 0.94 6.09 16 23 N -0.60 -28.81 10.36 -194.27 -2.01 -30.82 16 24 C 0.07 1.34 5.95 86.35 0.51 1.86 16 25 C 0.08 1.26 3.93 30.69 0.12 1.38 16 26 H 0.15 1.44 8.14 -2.39 -0.02 1.42 16 27 C -0.18 -3.35 8.81 71.98 0.63 -2.72 16 28 O -0.37 -6.94 9.76 -148.98 -1.45 -8.39 16 29 H 0.06 0.87 7.83 -2.38 -0.02 0.85 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.08 2.39 7.06 -2.39 -0.02 2.38 16 36 H 0.41 12.71 6.37 -92.70 -0.59 12.12 16 37 H 0.12 7.25 5.29 -3.77 -0.02 7.23 16 38 H 0.29 13.75 8.29 -92.71 -0.77 12.98 16 39 H 0.13 6.88 6.08 -2.91 -0.02 6.87 16 40 H 0.16 6.38 8.06 -2.91 -0.02 6.36 16 41 H 0.10 1.62 5.76 -2.38 -0.01 1.60 16 42 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.03 0.86 6.11 -2.39 -0.01 0.85 16 Total: -1.00 -71.76 357.09 2.42 -69.35 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 0.42 Total: 40.23 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 7.08 Total: 6.70 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.61 Total: -119.79 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.50 Total: -37.57 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -71.76 2.42 -69.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871722134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.008 kcal (2) G-P(sol) polarization free energy of solvation -71.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds