Wall clock time and date at job start Tue Mar 31 2020 12:20:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53000 * 109.47104 * 2 1
4 4 C 1.52999 * 109.47162 * 179.97438 * 3 2 1
5 5 H 1.09001 * 109.50649 * 55.10282 * 4 3 2
6 6 C 1.53291 * 109.51403 * 175.25359 * 4 3 2
7 7 N 1.47151 * 108.38600 * 172.22789 * 6 4 3
8 8 C 1.34776 * 120.98249 * 129.44328 * 7 6 4
9 9 O 1.21582 * 119.99943 * 355.01253 * 8 7 6
10 10 N 1.34782 * 119.99929 * 175.01237 * 8 7 6
11 11 C 1.39456 * 119.99933 * 185.64099 * 10 8 7
12 12 C 1.38649 * 119.64652 * 18.00120 * 11 10 8
13 13 C 1.40821 * 118.67353 * 179.97438 * 12 11 10
14 14 C 1.41543 * 120.99982 * 179.97438 * 13 12 11
15 15 H 1.08005 * 119.99853 * 26.88333 * 14 13 12
16 16 C 1.40029 * 120.00291 * 206.88900 * 14 13 12
17 17 N 1.30747 * 119.99747 * 7.95616 * 16 14 13
18 18 Si 1.86793 * 120.00395 * 187.95242 * 16 14 13
19 19 H 1.48504 * 109.47003 * 59.99777 * 18 16 14
20 20 H 1.48497 * 109.47572 * 179.97438 * 18 16 14
21 21 H 1.48498 * 109.47116 * 300.00103 * 18 16 14
22 22 C 1.41167 * 118.00681 * 359.97438 * 13 12 11
23 23 C 1.36587 * 119.12371 * 0.02562 * 22 13 12
24 24 N 1.32073 * 121.26186 * 359.71799 * 23 22 13
25 25 C 1.47150 * 118.03761 * 309.46687 * 7 6 4
26 26 C 1.53303 * 108.38408 * 50.53041 * 25 7 6
27 27 O 1.42957 * 109.51470 * 295.00299 * 4 3 2
28 28 H 1.09003 * 109.46751 * 59.99799 * 1 2 3
29 29 H 1.08999 * 109.46827 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.46993 * 300.00135 * 1 2 3
31 31 H 1.08997 * 109.46993 * 239.99865 * 2 1 3
32 32 H 1.08999 * 109.46954 * 119.99716 * 2 1 3
33 33 H 1.09010 * 109.46992 * 59.99942 * 3 2 1
34 34 H 1.08994 * 109.47611 * 299.99974 * 3 2 1
35 35 H 1.09001 * 109.68404 * 291.95119 * 6 4 3
36 36 H 1.09007 * 109.67907 * 52.46736 * 6 4 3
37 37 H 0.96994 * 119.99933 * 5.64639 * 10 8 7
38 38 H 1.08001 * 120.66537 * 359.97438 * 12 11 10
39 39 H 0.97005 * 120.00022 * 180.02562 * 17 16 14
40 40 H 1.07997 * 120.43855 * 179.97438 * 22 13 12
41 41 H 1.08005 * 119.36999 * 179.97438 * 23 22 13
42 42 H 1.09002 * 109.67887 * 290.81218 * 25 7 6
43 43 H 1.08994 * 109.68430 * 170.25865 * 25 7 6
44 44 H 1.08995 * 109.51029 * 187.77621 * 26 25 7
45 45 H 1.09006 * 109.50918 * 67.62463 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5701 1.4425 0.0006
5 1 3.9344 0.8546 -0.8418
6 6 4.0822 2.8824 -0.1189
7 7 5.5412 2.8735 0.0719
8 6 6.3597 3.4839 -0.8077
9 8 5.9041 3.9744 -1.8226
10 7 7.6833 3.5506 -0.5624
11 6 8.5138 4.2824 -1.4107
12 6 7.9626 5.2275 -2.2624
13 6 8.8201 5.9551 -3.1099
14 6 8.3102 6.9311 -3.9992
15 1 7.3870 7.4420 -3.7686
16 6 9.0026 7.2343 -5.1780
17 7 10.0321 6.5119 -5.5356
18 14 8.4555 8.6705 -6.2395
19 1 8.5264 9.9256 -5.4489
20 1 9.3470 8.7800 -7.4221
21 1 7.0584 8.4483 -6.6912
22 6 10.2036 5.6818 -3.0461
23 6 10.6541 4.7317 -2.1743
24 7 9.8215 4.0714 -1.3899
25 6 6.0803 2.1779 1.2513
26 6 5.4708 0.7723 1.3042
27 8 4.0471 0.8732 1.2221
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 1.6767 1.9564 0.8901
34 1 1.6768 1.9564 -0.8899
35 1 3.8436 3.2761 -1.1070
36 1 3.6151 3.5028 0.6460
37 1 8.0583 3.0896 0.2042
38 1 6.8969 5.4021 -2.2756
39 1 10.5120 6.7221 -6.3520
40 1 10.8967 6.2164 -3.6787
41 1 11.7117 4.5191 -2.1225
42 1 5.8149 2.7273 2.1546
43 1 7.1648 2.1050 1.1707
44 1 5.7482 0.2902 2.2415
45 1 5.8428 0.1824 0.4664
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000871727483.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:26
Heat of formation + Delta-G solvation = -34.957515 kcal
Electronic energy + Delta-G solvation = -26681.311619 eV
Core-core repulsion = 22892.024205 eV
Total energy + Delta-G solvation = -3789.287414 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-40.66557 -39.13998 -37.82509 -35.45556 -34.62183 -34.57505 -33.53667 -31.59253
-30.58291 -28.94545 -28.18055 -26.23460 -25.84235 -23.68822 -22.61165 -21.67977
-21.24260 -21.04162 -19.48771 -18.33339 -17.66071 -16.89950 -16.14901 -15.88731
-15.41284 -15.29344 -15.07425 -14.83190 -14.71745 -14.36961 -14.26141 -13.84034
-13.41535 -13.29793 -13.13061 -12.90493 -12.48165 -12.37491 -12.25839 -12.11065
-11.70939 -11.39626 -11.35992 -11.25201 -11.16681 -11.04057 -10.89760 -10.67817
-10.46072 -10.25872 -10.04785 -9.84370 -9.34299 -9.12935 -8.56524 -8.04207
-7.90185 -7.00738 -6.70582 -4.53861 2.56781 2.74728 2.82922 3.06057
3.09735 3.22473 3.47937 3.61143 3.91224 3.99318 4.38606 4.62185
4.72390 4.74855 4.78505 4.84915 4.95785 4.97547 5.12022 5.30330
5.37590 5.40598 5.51778 5.58508 5.61675 5.64722 5.73323 5.78092
5.88372 5.93021 6.00571 6.11899 6.26980 6.58325 6.63222 6.92948
6.97656 7.03803 7.12307 7.27298 7.52656 7.58536 7.99655 8.08085
8.23056 8.58514 8.78117 8.84329 8.92682 9.56677 10.17585
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.017337 B = 0.002868 C = 0.002527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1614.681488 B = 9758.881390 C =11076.923798
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.121 4.121
3 C -0.110 4.110
4 C 0.077 3.923
5 H 0.064 0.936
6 C 0.103 3.897
7 N -0.635 5.635
8 C 0.709 3.291
9 O -0.554 6.554
10 N -0.662 5.662
11 C 0.348 3.652
12 C -0.271 4.271
13 C 0.136 3.864
14 C -0.447 4.447
15 H 0.080 0.920
16 C 0.073 3.927
17 N -0.795 5.795
18 Si 0.917 3.083
19 H -0.263 1.263
20 H -0.278 1.278
21 H -0.264 1.264
22 C -0.221 4.221
23 C 0.102 3.898
24 N -0.603 5.603
25 C 0.075 3.925
26 C 0.050 3.950
27 O -0.375 6.375
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.054 0.946
31 H 0.059 0.941
32 H 0.069 0.931
33 H 0.073 0.927
34 H 0.081 0.919
35 H 0.105 0.895
36 H 0.072 0.928
37 H 0.396 0.604
38 H 0.140 0.860
39 H 0.281 0.719
40 H 0.133 0.867
41 H 0.123 0.877
42 H 0.078 0.922
43 H 0.088 0.912
44 H 0.106 0.894
45 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.585 -9.993 11.457 19.113
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.159 4.159
3 C -0.148 4.148
4 C 0.018 3.982
5 H 0.082 0.918
6 C -0.021 4.021
7 N -0.375 5.375
8 C 0.410 3.590
9 O -0.429 6.429
10 N -0.311 5.311
11 C 0.123 3.877
12 C -0.297 4.297
13 C 0.127 3.873
14 C -0.478 4.478
15 H 0.098 0.902
16 C -0.144 4.144
17 N -0.421 5.421
18 Si 0.741 3.259
19 H -0.188 1.188
20 H -0.203 1.203
21 H -0.189 1.189
22 C -0.245 4.245
23 C -0.049 4.049
24 N -0.324 5.324
25 C -0.049 4.049
26 C -0.028 4.028
27 O -0.294 6.294
28 H 0.072 0.928
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.092 0.908
34 H 0.099 0.901
35 H 0.123 0.877
36 H 0.091 0.909
37 H 0.233 0.767
38 H 0.157 0.843
39 H 0.093 0.907
40 H 0.151 0.849
41 H 0.141 0.859
42 H 0.096 0.904
43 H 0.106 0.894
44 H 0.124 0.876
45 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -11.533 -10.331 11.252 19.140
hybrid contribution 0.102 0.947 -0.888 1.302
sum -11.431 -9.383 10.364 18.059
Atomic orbital electron populations
1.21780 0.95885 1.01548 1.01786 1.21463 0.95596 0.96343 1.02483
1.21604 0.91848 0.98117 1.03234 1.22586 0.95037 0.93200 0.87361
0.91764 1.22157 0.78606 0.96895 1.04423 1.47293 1.06410 1.58268
1.25531 1.15643 0.80945 0.79535 0.82848 1.90897 1.74994 1.51021
1.26015 1.42368 1.05335 1.53378 1.30013 1.17642 0.87656 0.90906
0.91534 1.22313 1.01513 1.00870 1.04963 1.17819 0.90980 0.89360
0.89132 1.19564 1.07411 1.18076 1.02773 0.90212 1.25970 0.93793
0.96518 0.98167 1.69738 1.16038 1.34370 1.21992 0.86221 0.79596
0.81218 0.78825 1.18796 1.20257 1.18863 1.22083 0.96997 1.02912
1.02480 1.21379 0.96628 0.94039 0.92807 1.66532 1.02207 1.33063
1.30596 1.22345 0.99285 0.94044 0.89243 1.22937 0.81566 0.95336
1.02924 1.87932 1.20504 1.82651 1.38298 0.92759 0.92850 0.92731
0.92187 0.91248 0.90796 0.90088 0.87712 0.90948 0.76742 0.84307
0.90742 0.84917 0.85905 0.90402 0.89407 0.87612 0.92567
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16
2 C -0.12 -0.97 5.83 -26.73 -0.16 -1.12 16
3 C -0.11 -0.93 4.93 -26.73 -0.13 -1.06 16
4 C 0.08 0.80 2.78 -26.58 -0.07 0.73 16
5 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
6 C 0.10 1.26 5.94 -3.54 -0.02 1.24 16
7 N -0.64 -8.98 3.02 -178.00 -0.54 -9.51 16
8 C 0.71 13.52 8.16 -86.91 -0.71 12.81 16
9 O -0.55 -12.82 12.59 5.29 0.07 -12.76 16
10 N -0.66 -12.90 5.33 -15.86 -0.08 -12.98 16
11 C 0.35 8.47 7.52 -154.69 -1.16 7.31 16
12 C -0.27 -7.28 8.62 -38.45 -0.33 -7.62 16
13 C 0.14 3.79 5.60 -106.55 -0.60 3.19 16
14 C -0.45 -12.25 9.14 -37.65 -0.34 -12.59 16
15 H 0.08 2.12 7.86 -52.48 -0.41 1.71 16
16 C 0.07 1.87 5.34 -17.34 -0.09 1.78 16
17 N -0.80 -20.67 10.65 55.55 0.59 -20.08 16
18 Si 0.92 18.98 29.57 -169.99 -5.03 13.95 16
19 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16
20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16
21 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16
22 C -0.22 -5.86 8.73 -39.07 -0.34 -6.20 16
23 C 0.10 2.48 11.10 -18.04 -0.20 2.28 16
24 N -0.60 -14.67 10.36 -12.76 -0.13 -14.80 16
25 C 0.07 0.77 6.58 -3.53 -0.02 0.75 16
26 C 0.05 0.45 6.99 37.31 0.26 0.71 16
27 O -0.38 -3.95 9.92 -35.23 -0.35 -4.30 16
28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16
29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16
30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16
31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
32 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16
33 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16
34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.10 1.45 7.06 -51.93 -0.37 1.08 16
36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16
37 H 0.40 6.34 6.37 -40.82 -0.26 6.08 16
38 H 0.14 3.83 5.29 -52.54 -0.28 3.55 16
39 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16
40 H 0.13 3.55 6.08 -52.49 -0.32 3.23 16
41 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16
42 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16
43 H 0.09 0.83 5.77 -51.93 -0.30 0.53 16
44 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16
45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16
LS Contribution 362.10 15.07 5.46 5.46
Total: -1.00 -32.09 362.10 -10.12 -42.21
By element:
Atomic # 1 Polarization: 17.85 SS G_CDS: -6.55 Total: 11.30 kcal
Atomic # 6 Polarization: 5.08 SS G_CDS: -3.56 Total: 1.52 kcal
Atomic # 7 Polarization: -57.22 SS G_CDS: -0.16 Total: -57.38 kcal
Atomic # 8 Polarization: -16.77 SS G_CDS: -0.28 Total: -17.06 kcal
Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -32.09 -10.12 -42.21 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871727483.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.250 kcal
(2) G-P(sol) polarization free energy of solvation -32.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.836 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds