Wall clock time and date at job start Tue Mar 31 2020 12:20:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 C 1.53000 * 109.47104 * 2 1
4 4 C 1.52999 * 109.47162 * 179.97438 * 3 2 1
5 5 H 1.09001 * 109.50649 * 55.10282 * 4 3 2
6 6 C 1.53291 * 109.51403 * 175.25359 * 4 3 2
7 7 N 1.47151 * 108.38600 * 172.22789 * 6 4 3
8 8 C 1.34776 * 120.98249 * 129.44328 * 7 6 4
9 9 O 1.21582 * 119.99943 * 355.01253 * 8 7 6
10 10 N 1.34782 * 119.99929 * 175.01237 * 8 7 6
11 11 C 1.39456 * 119.99933 * 185.64099 * 10 8 7
12 12 C 1.38649 * 119.64652 * 18.00120 * 11 10 8
13 13 C 1.40821 * 118.67353 * 179.97438 * 12 11 10
14 14 C 1.41543 * 120.99982 * 179.97438 * 13 12 11
15 15 H 1.08005 * 119.99853 * 26.88333 * 14 13 12
16 16 C 1.40029 * 120.00291 * 206.88900 * 14 13 12
17 17 N 1.30747 * 119.99747 * 7.95616 * 16 14 13
18 18 Si 1.86793 * 120.00395 * 187.95242 * 16 14 13
19 19 H 1.48504 * 109.47003 * 59.99777 * 18 16 14
20 20 H 1.48497 * 109.47572 * 179.97438 * 18 16 14
21 21 H 1.48498 * 109.47116 * 300.00103 * 18 16 14
22 22 C 1.41167 * 118.00681 * 359.97438 * 13 12 11
23 23 C 1.36587 * 119.12371 * 0.02562 * 22 13 12
24 24 N 1.32073 * 121.26186 * 359.71799 * 23 22 13
25 25 C 1.47150 * 118.03761 * 309.46687 * 7 6 4
26 26 C 1.53303 * 108.38408 * 50.53041 * 25 7 6
27 27 O 1.42957 * 109.51470 * 295.00299 * 4 3 2
28 28 H 1.09003 * 109.46751 * 59.99799 * 1 2 3
29 29 H 1.08999 * 109.46827 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.46993 * 300.00135 * 1 2 3
31 31 H 1.08997 * 109.46993 * 239.99865 * 2 1 3
32 32 H 1.08999 * 109.46954 * 119.99716 * 2 1 3
33 33 H 1.09010 * 109.46992 * 59.99942 * 3 2 1
34 34 H 1.08994 * 109.47611 * 299.99974 * 3 2 1
35 35 H 1.09001 * 109.68404 * 291.95119 * 6 4 3
36 36 H 1.09007 * 109.67907 * 52.46736 * 6 4 3
37 37 H 0.96994 * 119.99933 * 5.64639 * 10 8 7
38 38 H 1.08001 * 120.66537 * 359.97438 * 12 11 10
39 39 H 0.97005 * 120.00022 * 180.02562 * 17 16 14
40 40 H 1.07997 * 120.43855 * 179.97438 * 22 13 12
41 41 H 1.08005 * 119.36999 * 179.97438 * 23 22 13
42 42 H 1.09002 * 109.67887 * 290.81218 * 25 7 6
43 43 H 1.08994 * 109.68430 * 170.25865 * 25 7 6
44 44 H 1.08995 * 109.51029 * 187.77621 * 26 25 7
45 45 H 1.09006 * 109.50918 * 67.62463 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5701 1.4425 0.0006
5 1 3.9344 0.8546 -0.8418
6 6 4.0822 2.8824 -0.1189
7 7 5.5412 2.8735 0.0719
8 6 6.3597 3.4839 -0.8077
9 8 5.9041 3.9744 -1.8226
10 7 7.6833 3.5506 -0.5624
11 6 8.5138 4.2824 -1.4107
12 6 7.9626 5.2275 -2.2624
13 6 8.8201 5.9551 -3.1099
14 6 8.3102 6.9311 -3.9992
15 1 7.3870 7.4420 -3.7686
16 6 9.0026 7.2343 -5.1780
17 7 10.0321 6.5119 -5.5356
18 14 8.4555 8.6705 -6.2395
19 1 8.5264 9.9256 -5.4489
20 1 9.3470 8.7800 -7.4221
21 1 7.0584 8.4483 -6.6912
22 6 10.2036 5.6818 -3.0461
23 6 10.6541 4.7317 -2.1743
24 7 9.8215 4.0714 -1.3899
25 6 6.0803 2.1779 1.2513
26 6 5.4708 0.7723 1.3042
27 8 4.0471 0.8732 1.2221
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8934 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 1.6767 1.9564 0.8901
34 1 1.6768 1.9564 -0.8899
35 1 3.8436 3.2761 -1.1070
36 1 3.6151 3.5028 0.6460
37 1 8.0583 3.0896 0.2042
38 1 6.8969 5.4021 -2.2756
39 1 10.5120 6.7221 -6.3520
40 1 10.8967 6.2164 -3.6787
41 1 11.7117 4.5191 -2.1225
42 1 5.8149 2.7273 2.1546
43 1 7.1648 2.1050 1.1707
44 1 5.7482 0.2902 2.2415
45 1 5.8428 0.1824 0.4664
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000871727483.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:25
Heat of formation + Delta-G solvation = -54.550926 kcal
Electronic energy + Delta-G solvation = -26682.161253 eV
Core-core repulsion = 22892.024205 eV
Total energy + Delta-G solvation = -3790.137048 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-42.04667 -40.48523 -39.44268 -36.49955 -36.30372 -35.60676 -35.30393 -32.59747
-32.41858 -30.55844 -29.25671 -27.91798 -27.19703 -24.56567 -24.11868 -23.39151
-22.58463 -21.92272 -20.88388 -19.93009 -19.24255 -18.00886 -17.60608 -17.33660
-16.91786 -16.46843 -16.27753 -16.14549 -15.88319 -15.87237 -15.48109 -15.23976
-14.83810 -14.69275 -14.30248 -14.11276 -14.02542 -13.86424 -13.22924 -13.16133
-12.98937 -12.91720 -12.84870 -12.46053 -12.26860 -12.10418 -11.93103 -11.91248
-11.62952 -11.59043 -11.45053 -11.22566 -11.20870 -10.86626 -10.03868 -9.93059
-9.70333 -8.88526 -8.63400 -6.60476 0.81035 0.90275 1.26590 1.36718
1.49506 1.52146 1.99394 2.18564 2.63523 2.70536 2.77035 3.54925
3.70698 3.82735 3.89976 3.96928 4.05635 4.13191 4.21616 4.24634
4.39048 4.44715 4.64166 4.66824 4.74507 4.75956 4.78514 4.85969
4.88073 4.97405 4.99918 5.07531 5.08200 5.22634 5.28124 5.32798
5.37322 5.50343 5.51866 5.55791 5.72823 6.01618 6.11684 6.18111
6.48067 6.69914 6.78893 6.82602 7.36336 7.60742 8.26837
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.017337 B = 0.002868 C = 0.002527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1614.681488 B = 9758.881390 C =11076.923798
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.118 4.118
3 C -0.107 4.107
4 C 0.085 3.915
5 H 0.052 0.948
6 C 0.098 3.902
7 N -0.625 5.625
8 C 0.704 3.296
9 O -0.601 6.601
10 N -0.652 5.652
11 C 0.356 3.644
12 C -0.302 4.302
13 C 0.108 3.892
14 C -0.484 4.484
15 H 0.072 0.928
16 C 0.034 3.966
17 N -0.818 5.818
18 Si 0.993 3.007
19 H -0.256 1.256
20 H -0.260 1.260
21 H -0.264 1.264
22 C -0.243 4.243
23 C 0.106 3.894
24 N -0.599 5.599
25 C 0.068 3.932
26 C 0.051 3.949
27 O -0.378 6.378
28 H 0.055 0.945
29 H 0.058 0.942
30 H 0.058 0.942
31 H 0.055 0.945
32 H 0.064 0.936
33 H 0.081 0.919
34 H 0.085 0.915
35 H 0.083 0.917
36 H 0.089 0.911
37 H 0.414 0.586
38 H 0.124 0.876
39 H 0.292 0.708
40 H 0.126 0.874
41 H 0.160 0.840
42 H 0.098 0.902
43 H 0.097 0.903
44 H 0.140 0.860
45 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.880 -10.666 12.576 20.324
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.156 4.156
3 C -0.145 4.145
4 C 0.027 3.973
5 H 0.070 0.930
6 C -0.024 4.024
7 N -0.364 5.364
8 C 0.406 3.594
9 O -0.480 6.480
10 N -0.303 5.303
11 C 0.129 3.871
12 C -0.327 4.327
13 C 0.099 3.901
14 C -0.515 4.515
15 H 0.091 0.909
16 C -0.182 4.182
17 N -0.444 5.444
18 Si 0.812 3.188
19 H -0.180 1.180
20 H -0.184 1.184
21 H -0.189 1.189
22 C -0.266 4.266
23 C -0.044 4.044
24 N -0.320 5.320
25 C -0.054 4.054
26 C -0.027 4.027
27 O -0.297 6.297
28 H 0.074 0.926
29 H 0.077 0.923
30 H 0.077 0.923
31 H 0.074 0.926
32 H 0.083 0.917
33 H 0.100 0.900
34 H 0.103 0.897
35 H 0.102 0.898
36 H 0.107 0.893
37 H 0.254 0.746
38 H 0.142 0.858
39 H 0.103 0.897
40 H 0.144 0.856
41 H 0.177 0.823
42 H 0.116 0.884
43 H 0.115 0.885
44 H 0.158 0.842
45 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -11.842 -11.067 12.450 20.439
hybrid contribution 0.177 1.049 -1.142 1.561
sum -11.666 -10.018 11.309 19.088
Atomic orbital electron populations
1.21765 0.94907 1.02050 1.02104 1.21426 0.96420 0.95714 1.02032
1.21612 0.90273 0.98735 1.03833 1.22498 0.96248 0.91415 0.87179
0.93028 1.22343 0.77564 0.98650 1.03877 1.47363 1.06651 1.56927
1.25413 1.15863 0.80946 0.79560 0.83070 1.90866 1.75676 1.53052
1.28358 1.42156 1.05251 1.52973 1.29883 1.17789 0.88109 0.90181
0.91066 1.22312 1.00869 1.02675 1.06865 1.18216 0.92065 0.89987
0.89783 1.19813 1.08094 1.19267 1.04326 0.90948 1.26871 0.93532
0.99036 0.98752 1.69773 1.16561 1.35382 1.22730 0.85100 0.79176
0.77311 0.77180 1.18029 1.18386 1.18856 1.22072 0.96319 1.04422
1.03789 1.21906 0.98346 0.92695 0.91475 1.66745 1.01957 1.32829
1.30514 1.22701 0.99953 0.94725 0.88036 1.23105 0.80665 0.94378
1.04511 1.87943 1.21392 1.82395 1.37924 0.92589 0.92294 0.92276
0.92633 0.91695 0.90047 0.89657 0.89811 0.89285 0.74582 0.85820
0.89651 0.85602 0.82302 0.88391 0.88484 0.84213 0.93155
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16
2 C -0.12 -1.73 5.83 30.60 0.18 -1.55 16
3 C -0.11 -1.67 4.93 30.59 0.15 -1.52 16
4 C 0.09 1.70 2.78 30.69 0.09 1.79 16
5 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
6 C 0.10 2.39 5.94 86.35 0.51 2.90 16
7 N -0.63 -17.24 3.02 -835.34 -2.52 -19.76 16
8 C 0.70 27.21 8.16 179.05 1.46 28.68 16
9 O -0.60 -29.09 12.59 -3.97 -0.05 -29.14 16
10 N -0.65 -25.29 5.33 -322.36 -1.72 -27.01 16
11 C 0.36 17.53 7.52 132.77 1.00 18.53 16
12 C -0.30 -16.91 8.62 23.00 0.20 -16.71 16
13 C 0.11 6.28 5.60 -21.11 -0.12 6.16 16
14 C -0.48 -27.66 9.14 23.52 0.21 -27.44 16
15 H 0.07 4.07 7.86 -2.91 -0.02 4.04 16
16 C 0.03 1.75 5.34 85.29 0.46 2.21 16
17 N -0.82 -43.03 10.65 21.84 0.23 -42.80 16
18 Si 0.99 39.01 29.57 68.60 2.03 41.03 16
19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16
20 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16
21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16
22 C -0.24 -13.14 8.73 22.60 0.20 -12.94 16
23 C 0.11 5.14 11.10 84.27 0.94 6.08 16
24 N -0.60 -28.84 10.36 -194.27 -2.01 -30.85 16
25 C 0.07 1.24 6.58 86.36 0.57 1.81 16
26 C 0.05 0.78 6.99 72.08 0.50 1.28 16
27 O -0.38 -7.10 9.92 -148.98 -1.48 -8.58 16
28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16
29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16
32 H 0.06 1.01 7.82 -2.39 -0.02 1.00 16
33 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16
34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
35 H 0.08 2.41 7.06 -2.39 -0.02 2.40 16
36 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16
37 H 0.41 12.68 6.37 -92.71 -0.59 12.09 16
38 H 0.12 7.27 5.29 -3.76 -0.02 7.25 16
39 H 0.29 13.74 8.29 -92.70 -0.77 12.97 16
40 H 0.13 6.89 6.08 -2.91 -0.02 6.87 16
41 H 0.16 6.39 8.06 -2.91 -0.02 6.37 16
42 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
43 H 0.10 1.59 5.77 -2.39 -0.01 1.57 16
44 H 0.14 1.26 8.14 -2.39 -0.02 1.24 16
45 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16
Total: -1.00 -71.99 362.10 1.95 -70.04
By element:
Atomic # 1 Polarization: 38.53 SS G_CDS: 0.41 Total: 38.94 kcal
Atomic # 6 Polarization: 1.08 SS G_CDS: 7.06 Total: 8.13 kcal
Atomic # 7 Polarization: -114.40 SS G_CDS: -6.02 Total: -120.42 kcal
Atomic # 8 Polarization: -36.20 SS G_CDS: -1.53 Total: -37.73 kcal
Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.03 kcal
Total: -71.99 1.95 -70.04 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871727483.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.487 kcal
(2) G-P(sol) polarization free energy of solvation -71.986 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.551 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds