Wall clock time and date at job start Tue Mar 31 2020 12:30:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53007 * 109.47117 * 2 1
4 4 O 1.42905 * 109.47120 * 240.00513 * 2 1 3
5 5 C 1.52997 * 109.47828 * 120.00285 * 2 1 3
6 6 N 1.46502 * 109.46800 * 59.99991 * 5 2 1
7 7 C 1.34774 * 120.00007 * 270.00279 * 6 5 2
8 8 O 1.21585 * 120.00118 * 5.39907 * 7 6 5
9 9 N 1.34777 * 120.00273 * 185.40214 * 7 6 5
10 10 C 1.39461 * 120.00027 * 182.78794 * 9 7 6
11 11 C 1.38640 * 119.64911 * 339.04743 * 10 9 7
12 12 C 1.40829 * 118.67334 * 179.72270 * 11 10 9
13 13 C 1.41539 * 120.99393 * 180.30074 * 12 11 10
14 14 H 1.08007 * 119.99525 * 205.03179 * 13 12 11
15 15 C 1.40025 * 120.00746 * 25.03519 * 13 12 11
16 16 N 1.30747 * 119.99690 * 11.89600 * 15 13 12
17 17 Si 1.86799 * 120.00562 * 191.89934 * 15 13 12
18 18 H 1.48500 * 109.46850 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47219 * 119.99852 * 17 15 13
20 20 H 1.48502 * 109.47001 * 239.99668 * 17 15 13
21 21 C 1.41156 * 118.00432 * 0.54079 * 12 11 10
22 22 C 1.36595 * 119.13112 * 359.73851 * 21 12 11
23 23 N 1.32076 * 121.25380 * 359.97438 * 22 21 12
24 24 C 1.46496 * 120.00336 * 90.00134 * 6 5 2
25 25 C 1.53010 * 117.49687 * 66.83549 * 24 6 5
26 26 C 1.53004 * 117.49589 * 358.17858 * 24 6 5
27 27 H 1.08998 * 109.46526 * 299.99304 * 1 2 3
28 28 H 1.08990 * 109.47230 * 59.99809 * 1 2 3
29 29 H 1.09004 * 109.46650 * 180.02562 * 1 2 3
30 30 H 1.08995 * 109.46865 * 180.02562 * 3 2 1
31 31 H 1.09002 * 109.46928 * 300.00452 * 3 2 1
32 32 H 1.09004 * 109.46749 * 60.00435 * 3 2 1
33 33 H 0.96700 * 114.00288 * 179.97438 * 4 2 1
34 34 H 1.08998 * 109.47622 * 180.02562 * 5 2 1
35 35 H 1.09004 * 109.47079 * 300.00202 * 5 2 1
36 36 H 0.97000 * 120.00225 * 2.78443 * 9 7 6
37 37 H 1.08000 * 120.66308 * 359.97438 * 11 10 9
38 38 H 0.96995 * 120.00510 * 180.02562 * 16 15 13
39 39 H 1.08002 * 120.43892 * 179.75893 * 21 12 11
40 40 H 1.07994 * 119.37649 * 179.97438 * 22 21 12
41 41 H 1.08995 * 115.55660 * 212.50376 * 24 6 5
42 42 H 1.08999 * 117.49521 * 359.97438 * 25 24 6
43 43 H 1.08992 * 117.49868 * 145.02149 * 25 24 6
44 44 H 1.08995 * 117.49853 * 214.97517 * 26 24 6
45 45 H 1.09001 * 117.49914 * 359.97214 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0063 -0.6736 -1.1669
5 6 2.0402 -0.7213 1.2491
6 7 1.5519 -2.1025 1.2490
7 6 0.3743 -2.4010 1.8327
8 8 -0.3290 -1.5119 2.2723
9 7 -0.0238 -3.6850 1.9291
10 6 -1.2681 -3.9898 2.4803
11 6 -1.8962 -3.0702 3.3060
12 6 -3.1549 -3.3968 3.8468
13 6 -3.8427 -2.4920 4.6904
14 1 -4.5642 -2.8614 5.4042
15 6 -3.5879 -1.1181 4.5996
16 7 -2.8996 -0.6461 3.5932
17 14 -4.2313 0.0403 5.9162
18 1 -4.9750 -0.7376 6.9395
19 1 -3.0909 0.7414 6.5589
20 1 -5.1400 1.0380 5.2965
21 6 -3.7075 -4.6555 3.5264
22 6 -3.0109 -5.4988 2.7082
23 7 -1.8347 -5.1574 2.2137
24 6 2.3435 -3.1593 0.6146
25 6 3.6857 -3.5181 1.2557
26 6 3.6503 -2.7499 -0.0679
27 1 -0.3632 0.5137 0.8901
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9564 -0.8900
32 1 1.6767 1.9563 0.8901
33 1 2.9703 -0.7114 -1.2332
34 1 3.1301 -0.7208 1.2493
35 1 1.6768 -0.2075 2.1392
36 1 0.5551 -4.3972 1.6150
37 1 -1.4315 -2.1206 3.5268
38 1 -2.7227 0.3055 3.5304
39 1 -4.6687 -4.9480 3.9227
40 1 -3.4298 -6.4629 2.4608
41 1 1.7706 -3.9678 0.1607
42 1 3.9797 -2.9675 2.1493
43 1 3.9957 -4.5625 1.2232
44 1 3.9371 -3.2893 -0.9705
45 1 3.9207 -1.6942 -0.0452
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000871727875.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:08
Heat of formation + Delta-G solvation = 3.093961 kcal
Electronic energy + Delta-G solvation = -28298.405104 eV
Core-core repulsion = 24510.767726 eV
Total energy + Delta-G solvation = -3787.637378 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-40.50614 -38.70626 -37.46634 -36.93255 -34.32971 -33.59532 -33.21907 -31.72665
-30.38878 -28.53624 -27.14843 -26.32669 -25.75885 -22.73059 -22.52900 -21.88543
-21.20751 -20.27637 -19.03484 -18.31022 -17.53025 -16.84500 -15.97170 -15.58639
-15.29095 -15.09218 -14.78244 -14.56808 -14.18801 -14.10058 -13.99022 -13.51525
-12.82892 -12.68531 -12.49806 -12.40921 -12.32507 -12.04515 -11.85510 -11.72617
-11.61162 -11.35872 -11.34181 -11.13722 -11.11592 -10.88423 -10.69335 -10.50800
-10.26258 -10.10695 -10.07063 -9.55047 -9.23435 -8.69638 -8.19072 -7.95323
-7.78083 -6.92284 -6.51480 -4.40972 2.75818 2.85972 2.98821 3.12330
3.17145 3.31086 3.58372 3.92460 3.99390 4.17895 4.33941 4.67639
4.71549 4.79627 4.82783 4.90601 4.98292 5.06135 5.31456 5.43054
5.63274 5.65545 5.69184 5.80901 5.83533 5.92520 5.96282 5.99009
6.02677 6.23886 6.35060 6.58498 6.64348 6.78411 6.90415 6.93243
7.13969 7.27959 7.36186 7.63768 7.70610 7.73235 8.06664 8.25978
8.51907 8.67699 8.92494 9.00634 9.25018 9.69081 10.28964
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012927 B = 0.004888 C = 0.003860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2165.561035 B = 5727.011191 C = 7252.831996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.111 3.889
3 C -0.176 4.176
4 O -0.552 6.552
5 C 0.111 3.889
6 N -0.595 5.595
7 C 0.699 3.301
8 O -0.520 6.520
9 N -0.662 5.662
10 C 0.333 3.667
11 C -0.221 4.221
12 C 0.132 3.868
13 C -0.454 4.454
14 H 0.078 0.922
15 C 0.071 3.929
16 N -0.749 5.749
17 Si 0.906 3.094
18 H -0.262 1.262
19 H -0.273 1.273
20 H -0.275 1.275
21 C -0.290 4.290
22 C 0.119 3.881
23 N -0.608 5.608
24 C 0.083 3.917
25 C -0.200 4.200
26 C -0.177 4.177
27 H 0.081 0.919
28 H 0.046 0.954
29 H 0.065 0.935
30 H 0.053 0.947
31 H 0.064 0.936
32 H 0.069 0.931
33 H 0.362 0.638
34 H 0.072 0.928
35 H 0.094 0.906
36 H 0.394 0.606
37 H 0.178 0.822
38 H 0.281 0.719
39 H 0.098 0.902
40 H 0.120 0.880
41 H 0.123 0.877
42 H 0.095 0.905
43 H 0.100 0.900
44 H 0.103 0.897
45 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.360 2.398 -6.001 15.747
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.069 3.931
3 C -0.234 4.234
4 O -0.357 6.357
5 C -0.013 4.013
6 N -0.332 5.332
7 C 0.400 3.600
8 O -0.392 6.392
9 N -0.310 5.310
10 C 0.110 3.890
11 C -0.246 4.246
12 C 0.124 3.876
13 C -0.485 4.485
14 H 0.096 0.904
15 C -0.150 4.150
16 N -0.372 5.372
17 Si 0.730 3.270
18 H -0.185 1.185
19 H -0.198 1.198
20 H -0.200 1.200
21 C -0.314 4.314
22 C -0.035 4.035
23 N -0.329 5.329
24 C -0.023 4.023
25 C -0.239 4.239
26 C -0.214 4.214
27 H 0.100 0.900
28 H 0.065 0.935
29 H 0.084 0.916
30 H 0.072 0.928
31 H 0.083 0.917
32 H 0.088 0.912
33 H 0.209 0.791
34 H 0.090 0.910
35 H 0.112 0.888
36 H 0.229 0.771
37 H 0.195 0.805
38 H 0.092 0.908
39 H 0.116 0.884
40 H 0.138 0.862
41 H 0.140 0.860
42 H 0.114 0.886
43 H 0.119 0.881
44 H 0.121 0.879
45 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 13.726 2.680 -6.446 15.400
hybrid contribution 0.221 0.725 0.870 1.154
sum 13.947 3.405 -5.576 15.402
Atomic orbital electron populations
1.21701 0.90902 1.03738 1.01842 1.21758 0.96561 0.89957 0.84783
1.22443 1.00679 0.96993 1.03256 1.86690 1.25468 1.79592 1.43997
1.21974 0.98054 0.81596 0.99720 1.46439 1.20591 1.06848 1.59289
1.15766 0.81111 0.83362 0.79773 1.91055 1.51427 1.45655 1.51075
1.42256 1.18235 1.06376 1.64095 1.17879 0.85172 0.92049 0.93859
1.22998 0.96596 1.03223 1.01735 1.17820 0.90287 0.90543 0.88998
1.19569 1.20485 0.90711 1.17767 0.90357 1.25994 0.94082 0.99376
0.95586 1.69850 1.27182 1.15314 1.24894 0.86304 0.79262 0.80006
0.81391 1.18537 1.19831 1.20030 1.21586 1.01878 0.99200 1.08779
1.21159 0.89901 0.97551 0.94845 1.66527 1.14609 1.19966 1.31807
1.21541 0.86840 0.93607 1.00267 1.23521 1.02118 1.01466 0.96810
1.23279 1.00372 1.00901 0.96875 0.89998 0.93490 0.91582 0.92789
0.91651 0.91216 0.79059 0.90962 0.88769 0.77127 0.80496 0.90812
0.88359 0.86246 0.85975 0.88633 0.88128 0.87892 0.88665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.08 7.44 37.16 0.28 -1.80 16
2 C 0.11 1.41 1.17 -90.62 -0.11 1.31 16
3 C -0.18 -1.77 8.82 37.16 0.33 -1.44 16
4 O -0.55 -6.76 11.63 -35.23 -0.41 -7.17 16
5 C 0.11 1.41 4.32 -4.04 -0.02 1.39 16
6 N -0.60 -8.77 2.52 -171.80 -0.43 -9.20 16
7 C 0.70 13.82 6.74 -86.92 -0.59 13.23 16
8 O -0.52 -12.03 10.27 5.29 0.05 -11.98 16
9 N -0.66 -13.63 5.30 -15.86 -0.08 -13.72 16
10 C 0.33 8.34 7.51 -154.68 -1.16 7.18 16
11 C -0.22 -6.07 7.55 -38.45 -0.29 -6.36 16
12 C 0.13 3.67 5.61 -106.55 -0.60 3.07 16
13 C -0.45 -12.33 9.14 -37.65 -0.34 -12.68 16
14 H 0.08 2.03 7.88 -52.48 -0.41 1.62 16
15 C 0.07 1.83 5.29 -17.34 -0.09 1.74 16
16 N -0.75 -19.90 10.59 55.55 0.59 -19.31 16
17 Si 0.91 19.05 29.58 -169.99 -5.03 14.02 16
18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16
19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16
21 C -0.29 -7.35 9.85 -39.07 -0.38 -7.73 16
22 C 0.12 2.84 11.10 -18.04 -0.20 2.64 16
23 N -0.61 -15.01 10.36 -12.75 -0.13 -15.14 16
24 C 0.08 0.97 5.31 -67.93 -0.36 0.61 16
25 C -0.20 -1.86 10.38 -26.69 -0.28 -2.13 16
26 C -0.18 -1.47 8.20 -26.69 -0.22 -1.69 16
27 H 0.08 1.47 7.63 -51.93 -0.40 1.07 16
28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
29 H 0.07 1.33 6.06 -51.93 -0.31 1.01 16
30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
33 H 0.36 3.07 6.65 45.56 0.30 3.37 16
34 H 0.07 0.70 6.16 -51.93 -0.32 0.38 16
35 H 0.09 1.36 7.50 -51.93 -0.39 0.97 16
36 H 0.39 6.96 6.89 -40.82 -0.28 6.68 16
37 H 0.18 5.05 3.28 -52.73 -0.17 4.88 16
38 H 0.28 6.90 8.29 -40.82 -0.34 6.56 16
39 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16
40 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16
41 H 0.12 1.47 7.14 -51.93 -0.37 1.10 16
42 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16
43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16
44 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16
45 H 0.10 0.69 4.63 -51.93 -0.24 0.45 16
LS Contribution 355.18 15.07 5.35 5.35
Total: -1.00 -31.72 355.18 -9.66 -41.38
By element:
Atomic # 1 Polarization: 23.96 SS G_CDS: -5.53 Total: 18.43 kcal
Atomic # 6 Polarization: 1.37 SS G_CDS: -4.03 Total: -2.67 kcal
Atomic # 7 Polarization: -57.31 SS G_CDS: -0.06 Total: -57.38 kcal
Atomic # 8 Polarization: -18.79 SS G_CDS: -0.36 Total: -19.14 kcal
Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -31.72 -9.66 -41.38 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871727875.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.476 kcal
(2) G-P(sol) polarization free energy of solvation -31.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.753 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.094 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds