Wall clock time and date at job start Tue Mar 31 2020 12:30:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53007 * 109.47117 * 2 1
4 4 O 1.42905 * 109.47120 * 240.00513 * 2 1 3
5 5 C 1.52997 * 109.47828 * 120.00285 * 2 1 3
6 6 N 1.46502 * 109.46800 * 59.99991 * 5 2 1
7 7 C 1.34774 * 120.00007 * 270.00279 * 6 5 2
8 8 O 1.21585 * 120.00118 * 5.39907 * 7 6 5
9 9 N 1.34777 * 120.00273 * 185.40214 * 7 6 5
10 10 C 1.39461 * 120.00027 * 182.78794 * 9 7 6
11 11 C 1.38640 * 119.64911 * 339.04743 * 10 9 7
12 12 C 1.40829 * 118.67334 * 179.72270 * 11 10 9
13 13 C 1.41539 * 120.99393 * 180.30074 * 12 11 10
14 14 H 1.08007 * 119.99525 * 205.03179 * 13 12 11
15 15 C 1.40025 * 120.00746 * 25.03519 * 13 12 11
16 16 N 1.30747 * 119.99690 * 11.89600 * 15 13 12
17 17 Si 1.86799 * 120.00562 * 191.89934 * 15 13 12
18 18 H 1.48500 * 109.46850 * 359.97438 * 17 15 13
19 19 H 1.48502 * 109.47219 * 119.99852 * 17 15 13
20 20 H 1.48502 * 109.47001 * 239.99668 * 17 15 13
21 21 C 1.41156 * 118.00432 * 0.54079 * 12 11 10
22 22 C 1.36595 * 119.13112 * 359.73851 * 21 12 11
23 23 N 1.32076 * 121.25380 * 359.97438 * 22 21 12
24 24 C 1.46496 * 120.00336 * 90.00134 * 6 5 2
25 25 C 1.53010 * 117.49687 * 66.83549 * 24 6 5
26 26 C 1.53004 * 117.49589 * 358.17858 * 24 6 5
27 27 H 1.08998 * 109.46526 * 299.99304 * 1 2 3
28 28 H 1.08990 * 109.47230 * 59.99809 * 1 2 3
29 29 H 1.09004 * 109.46650 * 180.02562 * 1 2 3
30 30 H 1.08995 * 109.46865 * 180.02562 * 3 2 1
31 31 H 1.09002 * 109.46928 * 300.00452 * 3 2 1
32 32 H 1.09004 * 109.46749 * 60.00435 * 3 2 1
33 33 H 0.96700 * 114.00288 * 179.97438 * 4 2 1
34 34 H 1.08998 * 109.47622 * 180.02562 * 5 2 1
35 35 H 1.09004 * 109.47079 * 300.00202 * 5 2 1
36 36 H 0.97000 * 120.00225 * 2.78443 * 9 7 6
37 37 H 1.08000 * 120.66308 * 359.97438 * 11 10 9
38 38 H 0.96995 * 120.00510 * 180.02562 * 16 15 13
39 39 H 1.08002 * 120.43892 * 179.75893 * 21 12 11
40 40 H 1.07994 * 119.37649 * 179.97438 * 22 21 12
41 41 H 1.08995 * 115.55660 * 212.50376 * 24 6 5
42 42 H 1.08999 * 117.49521 * 359.97438 * 25 24 6
43 43 H 1.08992 * 117.49868 * 145.02149 * 25 24 6
44 44 H 1.08995 * 117.49853 * 214.97517 * 26 24 6
45 45 H 1.09001 * 117.49914 * 359.97214 * 26 24 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 8 2.0063 -0.6736 -1.1669
5 6 2.0402 -0.7213 1.2491
6 7 1.5519 -2.1025 1.2490
7 6 0.3743 -2.4010 1.8327
8 8 -0.3290 -1.5119 2.2723
9 7 -0.0238 -3.6850 1.9291
10 6 -1.2681 -3.9898 2.4803
11 6 -1.8962 -3.0702 3.3060
12 6 -3.1549 -3.3968 3.8468
13 6 -3.8427 -2.4920 4.6904
14 1 -4.5642 -2.8614 5.4042
15 6 -3.5879 -1.1181 4.5996
16 7 -2.8996 -0.6461 3.5932
17 14 -4.2313 0.0403 5.9162
18 1 -4.9750 -0.7376 6.9395
19 1 -3.0909 0.7414 6.5589
20 1 -5.1400 1.0380 5.2965
21 6 -3.7075 -4.6555 3.5264
22 6 -3.0109 -5.4988 2.7082
23 7 -1.8347 -5.1574 2.2137
24 6 2.3435 -3.1593 0.6146
25 6 3.6857 -3.5181 1.2557
26 6 3.6503 -2.7499 -0.0679
27 1 -0.3632 0.5137 0.8901
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6766 1.9564 -0.8900
32 1 1.6767 1.9563 0.8901
33 1 2.9703 -0.7114 -1.2332
34 1 3.1301 -0.7208 1.2493
35 1 1.6768 -0.2075 2.1392
36 1 0.5551 -4.3972 1.6150
37 1 -1.4315 -2.1206 3.5268
38 1 -2.7227 0.3055 3.5304
39 1 -4.6687 -4.9480 3.9227
40 1 -3.4298 -6.4629 2.4608
41 1 1.7706 -3.9678 0.1607
42 1 3.9797 -2.9675 2.1493
43 1 3.9957 -4.5625 1.2232
44 1 3.9371 -3.2893 -0.9705
45 1 3.9207 -1.6942 -0.0452
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000871727875.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:07
Heat of formation + Delta-G solvation = -18.160238 kcal
Electronic energy + Delta-G solvation = -28299.326755 eV
Core-core repulsion = 24510.767726 eV
Total energy + Delta-G solvation = -3788.559029 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.88771 -40.27691 -38.94660 -37.91987 -36.17390 -35.30499 -34.43214 -32.85202
-32.35765 -30.29679 -28.31725 -27.82172 -27.42549 -24.12498 -23.55494 -23.24399
-22.89517 -21.55183 -20.34734 -19.93440 -19.04865 -18.04655 -17.54650 -17.09695
-16.83276 -16.48514 -16.02541 -15.93878 -15.74893 -15.49155 -15.21608 -15.01612
-14.54730 -14.33841 -14.13187 -13.78910 -13.36788 -13.22255 -13.16411 -12.99589
-12.88501 -12.69777 -12.68603 -12.62484 -12.30539 -12.23280 -12.19832 -11.88956
-11.51011 -11.45602 -11.36148 -11.10388 -11.05257 -10.40969 -9.94196 -9.79901
-9.34729 -8.78018 -8.43664 -6.46434 0.88693 1.08248 1.37865 1.51289
1.53498 1.54338 2.19972 2.22831 2.81856 2.87478 2.96598 3.37483
3.78644 3.80608 3.81087 3.85115 3.98620 4.10185 4.14234 4.23139
4.41250 4.58736 4.72418 4.79408 4.81137 4.83551 4.89020 4.95208
4.96331 4.99460 5.04072 5.10015 5.19938 5.25062 5.27406 5.38026
5.42650 5.54855 5.68852 5.76350 5.91684 6.12698 6.39476 6.64720
6.86325 6.91474 6.93684 7.03641 7.70070 7.75117 8.36680
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012927 B = 0.004888 C = 0.003860
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2165.561035 B = 5727.011191 C = 7252.831996
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.121 3.879
3 C -0.169 4.169
4 O -0.561 6.561
5 C 0.108 3.892
6 N -0.583 5.583
7 C 0.690 3.310
8 O -0.559 6.559
9 N -0.657 5.657
10 C 0.334 3.666
11 C -0.255 4.255
12 C 0.100 3.900
13 C -0.486 4.486
14 H 0.081 0.919
15 C 0.028 3.972
16 N -0.778 5.778
17 Si 0.984 3.016
18 H -0.255 1.255
19 H -0.267 1.267
20 H -0.266 1.266
21 C -0.307 4.307
22 C 0.120 3.880
23 N -0.611 5.611
24 C 0.041 3.959
25 C -0.188 4.188
26 C -0.147 4.147
27 H 0.058 0.942
28 H 0.048 0.952
29 H 0.025 0.975
30 H 0.088 0.912
31 H 0.064 0.936
32 H 0.064 0.936
33 H 0.383 0.617
34 H 0.115 0.885
35 H 0.071 0.929
36 H 0.408 0.592
37 H 0.165 0.835
38 H 0.284 0.716
39 H 0.113 0.887
40 H 0.161 0.839
41 H 0.113 0.887
42 H 0.093 0.907
43 H 0.114 0.886
44 H 0.123 0.877
45 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.800 2.713 -6.693 18.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.079 3.921
3 C -0.227 4.227
4 O -0.370 6.370
5 C -0.015 4.015
6 N -0.318 5.318
7 C 0.391 3.609
8 O -0.434 6.434
9 N -0.306 5.306
10 C 0.110 3.890
11 C -0.279 4.279
12 C 0.092 3.908
13 C -0.517 4.517
14 H 0.099 0.901
15 C -0.191 4.191
16 N -0.401 5.401
17 Si 0.804 3.196
18 H -0.179 1.179
19 H -0.192 1.192
20 H -0.191 1.191
21 C -0.331 4.331
22 C -0.034 4.034
23 N -0.333 5.333
24 C -0.063 4.063
25 C -0.227 4.227
26 C -0.184 4.184
27 H 0.077 0.923
28 H 0.067 0.933
29 H 0.044 0.956
30 H 0.107 0.893
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.233 0.767
34 H 0.133 0.867
35 H 0.090 0.910
36 H 0.245 0.755
37 H 0.182 0.818
38 H 0.095 0.905
39 H 0.131 0.869
40 H 0.178 0.822
41 H 0.131 0.869
42 H 0.111 0.889
43 H 0.133 0.867
44 H 0.141 0.859
45 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 16.246 2.969 -7.182 18.010
hybrid contribution -0.464 0.550 0.964 1.203
sum 15.782 3.519 -6.218 17.324
Atomic orbital electron populations
1.21553 0.94605 1.00632 1.00735 1.21505 0.93665 0.91919 0.84967
1.22368 1.02782 0.94466 1.03039 1.86653 1.27462 1.79600 1.43310
1.22172 1.00235 0.80240 0.98865 1.46357 1.19029 1.08461 1.57944
1.16056 0.82372 0.82540 0.79933 1.91027 1.53183 1.46432 1.52778
1.42139 1.17104 1.07431 1.63940 1.18091 0.86369 0.91626 0.92956
1.23015 0.97386 1.03718 1.03823 1.18279 0.90889 0.91932 0.89697
1.19859 1.21411 0.91876 1.18558 0.90112 1.26893 0.94000 1.00572
0.97648 1.69967 1.27845 1.15792 1.26492 0.85140 0.78728 0.77498
0.78201 1.17860 1.19226 1.19074 1.21810 1.02797 0.98877 1.09627
1.21793 0.89373 0.98714 0.93497 1.66727 1.15058 1.19607 1.31868
1.21780 0.87832 0.93587 1.03129 1.23548 0.99095 1.02622 0.97404
1.23434 0.95900 1.02032 0.97076 0.92292 0.93328 0.95621 0.89339
0.91682 0.91700 0.76708 0.86721 0.91006 0.75546 0.81840 0.90517
0.86938 0.82192 0.86884 0.88890 0.86736 0.85850 0.86993
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.12 7.44 71.98 0.54 -3.58 16
2 C 0.12 2.94 1.17 -10.79 -0.01 2.93 16
3 C -0.17 -3.01 8.82 71.98 0.63 -2.37 16
4 O -0.56 -12.33 11.63 -148.98 -1.73 -14.06 16
5 C 0.11 2.63 4.32 86.38 0.37 3.00 16
6 N -0.58 -17.07 2.52 -815.71 -2.06 -19.13 16
7 C 0.69 28.47 6.74 179.06 1.21 29.68 16
8 O -0.56 -27.61 10.27 -3.98 -0.04 -27.65 16
9 N -0.66 -28.01 5.30 -322.37 -1.71 -29.72 16
10 C 0.33 17.32 7.51 132.76 1.00 18.32 16
11 C -0.25 -14.71 7.55 23.00 0.17 -14.54 16
12 C 0.10 5.82 5.61 -21.12 -0.12 5.70 16
13 C -0.49 -27.47 9.14 23.52 0.21 -27.25 16
14 H 0.08 4.33 7.88 -2.91 -0.02 4.31 16
15 C 0.03 1.48 5.29 85.29 0.45 1.93 16
16 N -0.78 -43.39 10.59 21.84 0.23 -43.16 16
17 Si 0.98 40.00 29.58 68.60 2.03 42.03 16
18 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16
19 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16
20 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16
21 C -0.31 -15.89 9.85 22.60 0.22 -15.67 16
22 C 0.12 5.69 11.10 84.27 0.94 6.63 16
23 N -0.61 -30.47 10.36 -194.27 -2.01 -32.48 16
24 C 0.04 0.89 5.31 45.00 0.24 1.13 16
25 C -0.19 -2.91 10.38 30.62 0.32 -2.60 16
26 C -0.15 -1.84 8.20 30.62 0.25 -1.59 16
27 H 0.06 2.29 7.63 -2.39 -0.02 2.27 16
28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
29 H 0.02 1.07 6.06 -2.38 -0.01 1.06 16
30 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16
33 H 0.38 4.79 6.65 -74.06 -0.49 4.29 16
34 H 0.11 1.80 6.16 -2.39 -0.01 1.78 16
35 H 0.07 2.11 7.50 -2.39 -0.02 2.09 16
36 H 0.41 14.64 6.89 -92.71 -0.64 14.01 16
37 H 0.16 9.94 3.28 -6.78 -0.02 9.92 16
38 H 0.28 14.67 8.29 -92.71 -0.77 13.90 16
39 H 0.11 5.32 8.06 -2.91 -0.02 5.30 16
40 H 0.16 6.15 8.06 -2.91 -0.02 6.13 16
41 H 0.11 2.64 7.14 -2.39 -0.02 2.62 16
42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
43 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16
44 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16
45 H 0.11 1.03 4.63 -2.39 -0.01 1.02 16
Total: -1.00 -74.50 355.18 1.03 -73.48
By element:
Atomic # 1 Polarization: 49.08 SS G_CDS: -0.10 Total: 48.98 kcal
Atomic # 6 Polarization: -4.71 SS G_CDS: 6.42 Total: 1.71 kcal
Atomic # 7 Polarization: -118.93 SS G_CDS: -5.55 Total: -124.48 kcal
Atomic # 8 Polarization: -39.94 SS G_CDS: -1.77 Total: -41.72 kcal
Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal
Total: -74.50 1.03 -73.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000871727875.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.315 kcal
(2) G-P(sol) polarization free energy of solvation -74.503 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.187 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.160 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds