Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46932 * 2 1 4 4 C 1.52996 * 109.47167 * 119.99656 * 2 1 3 5 5 H 1.09005 * 109.51519 * 299.90133 * 4 2 1 6 6 C 1.53296 * 109.51327 * 179.74911 * 4 2 1 7 7 N 1.47153 * 108.38763 * 187.77186 * 6 4 2 8 8 C 1.34776 * 120.98475 * 230.51469 * 7 6 4 9 9 O 1.21571 * 119.99873 * 355.05404 * 8 7 6 10 10 N 1.34781 * 119.99798 * 175.05581 * 8 7 6 11 11 C 1.39459 * 119.99944 * 185.16131 * 10 8 7 12 12 C 1.38633 * 119.64971 * 185.84924 * 11 10 8 13 13 C 1.40819 * 118.67558 * 179.80385 * 12 11 10 14 14 C 1.41550 * 121.00193 * 180.21389 * 13 12 11 15 15 H 1.07994 * 120.00235 * 208.22008 * 14 13 12 16 16 C 1.40032 * 119.99533 * 28.21783 * 14 13 12 17 17 N 1.30742 * 120.00126 * 9.54416 * 16 14 13 18 18 Si 1.86798 * 119.99724 * 189.54996 * 16 14 13 19 19 H 1.48502 * 109.47469 * 60.00063 * 18 16 14 20 20 H 1.48506 * 109.47171 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47173 * 299.99697 * 18 16 14 22 22 C 1.41163 * 118.00373 * 0.46079 * 13 12 11 23 23 C 1.36587 * 119.13095 * 359.75421 * 22 13 12 24 24 N 1.32071 * 121.25176 * 0.02562 * 23 22 13 25 25 C 1.47267 * 118.05629 * 50.53628 * 7 6 4 26 26 C 1.53299 * 108.32306 * 309.48756 * 25 7 6 27 27 O 1.42957 * 109.51336 * 60.00337 * 4 2 1 28 28 H 1.09005 * 109.47295 * 300.00296 * 1 2 3 29 29 H 1.08995 * 109.46897 * 60.00429 * 1 2 3 30 30 H 1.09005 * 109.46899 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47553 * 240.00139 * 2 1 3 32 32 H 1.09004 * 109.46861 * 299.99751 * 3 2 1 33 33 H 1.08995 * 109.47409 * 59.99791 * 3 2 1 34 34 H 1.09004 * 109.47178 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.68284 * 307.49469 * 6 4 2 36 36 H 1.09002 * 109.68290 * 68.05559 * 6 4 2 37 37 H 0.97002 * 120.00104 * 5.16837 * 10 8 7 38 38 H 1.07998 * 120.66666 * 359.97438 * 12 11 10 39 39 H 0.97003 * 119.99826 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.43455 * 179.77977 * 22 13 12 41 41 H 1.08000 * 119.37313 * 179.97438 * 23 22 13 42 42 H 1.09001 * 109.74878 * 189.77031 * 25 7 6 43 43 H 1.08994 * 109.68052 * 69.17036 * 25 7 6 44 44 H 1.08999 * 109.51545 * 292.33409 * 26 25 7 45 45 H 1.09006 * 109.51067 * 172.23198 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6785 -0.2068 2.1397 6 6 3.5729 -0.7272 1.2471 7 7 4.0353 -1.5827 2.3515 8 6 4.9544 -1.1414 3.2330 9 8 5.4803 -0.0573 3.0713 10 7 5.2905 -1.9020 4.2936 11 6 6.1598 -1.4020 5.2628 12 6 6.5967 -2.2302 6.2851 13 6 7.4774 -1.7053 7.2504 14 6 7.9577 -2.5083 8.3125 15 1 8.2292 -2.0532 9.2535 16 6 8.0807 -3.8929 8.1430 17 7 7.9330 -4.4219 6.9566 18 14 8.4557 -4.9839 9.6122 19 1 7.3775 -4.8406 10.6233 20 1 8.5342 -6.3995 9.1703 21 1 9.7530 -4.5791 10.2111 22 6 7.8627 -0.3526 7.1301 23 6 7.3763 0.3874 6.0901 24 7 6.5549 -0.1390 5.1998 25 6 3.4648 -2.9355 2.4653 26 6 1.9372 -2.8208 2.4077 27 8 1.5640 -2.0692 1.2502 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 -0.0005 35 1 3.9372 -1.1229 0.2990 36 1 3.9443 0.2878 1.3888 37 1 4.9279 -2.7973 4.3828 38 1 6.2704 -3.2583 6.3386 39 1 8.0178 -5.3811 6.8393 40 1 8.5337 0.0913 7.8506 41 1 7.6682 1.4228 5.9945 42 1 3.7637 -3.3828 3.4134 43 1 3.8179 -3.5535 1.6398 44 1 1.5761 -2.3144 3.3028 45 1 1.4991 -3.8174 2.3514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871728122.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = -49.824920 kcal Electronic energy + Delta-G solvation = -27052.934539 eV Core-core repulsion = 23263.002426 eV Total energy + Delta-G solvation = -3789.932113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.86519 -40.50963 -39.41072 -36.60134 -36.18378 -35.71192 -35.44318 -32.44440 -31.50595 -30.57695 -28.72585 -27.92244 -27.66255 -25.32912 -24.11625 -23.76929 -22.70025 -21.19160 -20.89034 -19.70408 -19.29799 -17.83136 -17.56014 -17.17005 -16.85960 -16.52853 -16.27881 -16.06944 -15.85067 -15.76890 -15.13707 -14.93187 -14.89638 -14.68212 -14.33885 -14.28294 -14.03205 -13.59489 -13.19487 -13.13629 -13.00459 -12.87335 -12.67855 -12.58510 -12.27196 -12.06556 -11.92881 -11.89906 -11.71461 -11.56995 -11.48864 -11.23246 -11.18616 -11.11250 -9.90788 -9.70559 -9.61404 -8.86031 -8.60407 -6.58332 0.79894 1.00202 1.38842 1.41893 1.53080 1.57972 2.15938 2.21123 2.64923 2.70630 2.84433 3.57936 3.73620 3.80901 3.88586 3.93903 4.02743 4.07224 4.21117 4.24562 4.40726 4.51641 4.63350 4.66627 4.68835 4.77365 4.81085 4.82644 4.88766 4.90946 4.99975 5.06241 5.07193 5.19521 5.22583 5.35449 5.40888 5.46055 5.47465 5.61725 5.69884 5.93993 6.10891 6.21250 6.53387 6.72410 6.79723 6.84368 7.48065 7.84357 8.30013 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.002948 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.575061 B = 9495.179123 C =10458.895445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.150 4.150 4 C 0.090 3.910 5 H 0.050 0.950 6 C 0.102 3.898 7 N -0.633 5.633 8 C 0.694 3.306 9 O -0.576 6.576 10 N -0.660 5.660 11 C 0.350 3.650 12 C -0.255 4.255 13 C 0.116 3.884 14 C -0.484 4.484 15 H 0.085 0.915 16 C 0.037 3.963 17 N -0.820 5.820 18 Si 0.990 3.010 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.261 1.261 22 C -0.293 4.293 23 C 0.113 3.887 24 N -0.580 5.580 25 C 0.069 3.931 26 C 0.052 3.948 27 O -0.378 6.378 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.416 0.584 38 H 0.126 0.874 39 H 0.291 0.709 40 H 0.118 0.882 41 H 0.149 0.851 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.051 0.949 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.935 -1.398 -10.619 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.207 4.207 4 C 0.031 3.969 5 H 0.068 0.932 6 C -0.021 4.021 7 N -0.373 5.373 8 C 0.396 3.604 9 O -0.451 6.451 10 N -0.311 5.311 11 C 0.123 3.877 12 C -0.281 4.281 13 C 0.108 3.892 14 C -0.515 4.515 15 H 0.103 0.897 16 C -0.179 4.179 17 N -0.446 5.446 18 Si 0.810 3.190 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.186 1.186 22 C -0.317 4.317 23 C -0.040 4.040 24 N -0.299 5.299 25 C -0.054 4.054 26 C -0.026 4.026 27 O -0.296 6.296 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.256 0.744 38 H 0.144 0.856 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.166 0.834 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.016 -0.367 -11.777 18.311 hybrid contribution 0.898 -1.245 1.621 2.232 sum -13.118 -1.612 -10.156 16.668 Atomic orbital electron populations 1.21718 0.93459 1.02248 1.02097 1.21072 0.97361 0.95694 0.95874 1.21891 1.01131 0.94804 1.02900 1.22540 0.91160 0.83676 0.99543 0.93185 1.22303 0.95150 0.96000 0.88630 1.47477 1.43022 1.17034 1.29772 1.16118 0.80464 0.83855 0.80003 1.90949 1.55977 1.22549 1.75634 1.42604 1.48086 1.18765 1.21662 1.18175 0.91101 0.90167 0.88275 1.21514 1.06016 1.00673 0.99879 1.18009 0.87628 0.91759 0.91824 1.19838 1.39446 0.92607 0.99631 0.89708 1.26821 0.91876 0.99550 0.99682 1.69791 1.35700 1.14637 1.24439 0.85128 0.79842 0.76506 0.77489 1.18252 1.19083 1.18582 1.21898 1.09233 0.97052 1.03537 1.21921 0.92830 0.99196 0.90043 1.67286 1.19889 1.12252 1.30507 1.22655 0.95755 0.82835 1.04133 1.23090 0.92429 0.98600 0.88456 1.87921 1.75527 1.23472 1.42694 0.93184 0.91150 0.92286 0.89581 0.90201 0.92879 0.92868 0.90093 0.89745 0.74372 0.85616 0.89801 0.86436 0.83419 0.88841 0.88846 0.93108 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.05 71.98 0.65 -1.39 16 2 C -0.08 -1.37 2.72 -10.79 -0.03 -1.40 16 3 C -0.15 -2.46 8.86 71.98 0.64 -1.82 16 4 C 0.09 1.94 2.36 30.69 0.07 2.01 16 5 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 6 C 0.10 2.69 5.31 86.35 0.46 3.15 16 7 N -0.63 -19.05 3.02 -835.06 -2.52 -21.58 16 8 C 0.69 28.43 8.26 179.05 1.48 29.91 16 9 O -0.58 -28.75 14.14 -3.94 -0.06 -28.81 16 10 N -0.66 -27.25 5.31 -322.38 -1.71 -28.96 16 11 C 0.35 17.65 7.40 132.76 0.98 18.63 16 12 C -0.25 -13.25 8.60 23.00 0.20 -13.06 16 13 C 0.12 6.24 5.58 -21.11 -0.12 6.12 16 14 C -0.48 -25.00 9.13 23.52 0.21 -24.79 16 15 H 0.08 4.16 7.86 -2.91 -0.02 4.14 16 16 C 0.04 1.75 5.31 85.29 0.45 2.21 16 17 N -0.82 -40.21 10.81 21.84 0.24 -39.97 16 18 Si 0.99 35.76 29.57 68.60 2.03 37.79 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 20 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 21 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 22 C -0.29 -14.71 9.85 22.60 0.22 -14.49 16 23 C 0.11 5.59 11.10 84.27 0.94 6.52 16 24 N -0.58 -30.83 7.90 -194.28 -1.54 -32.37 16 25 C 0.07 1.45 6.64 86.33 0.57 2.03 16 26 C 0.05 0.91 6.98 72.08 0.50 1.41 16 27 O -0.38 -7.79 9.71 -148.98 -1.45 -9.24 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.93 7.68 -2.38 -0.02 0.91 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 0.98 6.63 -2.38 -0.02 0.96 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.58 5.89 -2.39 -0.01 2.57 16 37 H 0.42 14.05 6.21 -92.71 -0.58 13.47 16 38 H 0.13 6.46 6.26 -2.91 -0.02 6.44 16 39 H 0.29 12.80 8.29 -92.71 -0.77 12.03 16 40 H 0.12 5.34 8.06 -2.91 -0.02 5.32 16 41 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 42 H 0.09 1.85 5.67 -2.39 -0.01 1.83 16 43 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -69.99 360.95 2.66 -67.33 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: 0.43 Total: 40.77 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 7.23 Total: 15.04 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -5.53 Total: -122.87 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.50 Total: -38.05 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -69.99 2.66 -67.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871728122.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.502 kcal (2) G-P(sol) polarization free energy of solvation -69.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds