Wall clock time and date at job start Tue Mar 31 2020 12:20:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52996 * 109.47348 * 2 1
4 4 C 1.52995 * 109.47157 * 179.97438 * 3 2 1
5 5 H 1.09000 * 109.51360 * 55.10722 * 4 3 2
6 6 C 1.53715 * 109.44189 * 175.38925 * 4 3 2
7 7 N 1.47158 * 108.16092 * 172.37548 * 6 4 3
8 8 C 1.34774 * 120.97863 * 129.43212 * 7 6 4
9 9 O 1.21573 * 120.00435 * 4.78500 * 8 7 6
10 10 N 1.34777 * 119.99699 * 184.78679 * 8 7 6
11 11 C 1.39243 * 120.00334 * 183.83785 * 10 8 7
12 12 C 1.39688 * 119.57228 * 339.01963 * 11 10 8
13 13 C 1.38648 * 119.49962 * 179.97438 * 12 11 10
14 14 C 1.38349 * 118.66599 * 0.02562 * 13 12 11
15 15 C 1.40575 * 119.13787 * 359.97438 * 14 13 12
16 16 C 1.41329 * 119.79420 * 180.02562 * 15 14 13
17 17 H 1.07997 * 119.99573 * 5.15364 * 16 15 14
18 18 C 1.40026 * 120.00111 * 185.15469 * 16 15 14
19 19 N 1.30744 * 120.00116 * 354.86068 * 18 16 15
20 20 Si 1.86805 * 119.99815 * 174.86414 * 18 16 15
21 21 H 1.48504 * 109.47321 * 94.99766 * 20 18 16
22 22 H 1.48499 * 109.46742 * 214.99488 * 20 18 16
23 23 H 1.48500 * 109.47061 * 334.99695 * 20 18 16
24 24 N 1.31902 * 119.58113 * 158.75216 * 11 10 8
25 25 C 1.47147 * 118.03506 * 309.15907 * 7 6 4
26 26 C 1.53294 * 108.38573 * 50.78724 * 25 7 6
27 27 O 1.42959 * 109.51385 * 295.00050 * 4 3 2
28 28 H 1.08998 * 109.46990 * 60.00109 * 1 2 3
29 29 H 1.09004 * 109.47110 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47170 * 299.99936 * 1 2 3
31 31 H 1.09005 * 109.46905 * 239.99965 * 2 1 3
32 32 H 1.08999 * 109.46509 * 120.00487 * 2 1 3
33 33 H 1.08996 * 109.46933 * 59.99919 * 3 2 1
34 34 H 1.09006 * 109.47007 * 300.00249 * 3 2 1
35 35 H 1.08995 * 109.83698 * 52.69686 * 6 4 3
36 36 H 1.09003 * 109.74447 * 291.99999 * 6 4 3
37 37 H 0.97005 * 119.99915 * 4.10404 * 10 8 7
38 38 H 1.08001 * 120.25496 * 0.02562 * 12 11 10
39 39 H 1.07998 * 120.66751 * 180.02562 * 13 12 11
40 40 H 1.08003 * 120.43280 * 179.97438 * 14 13 12
41 41 H 0.96999 * 120.00106 * 180.02562 * 19 18 16
42 42 H 1.08996 * 109.68395 * 170.50942 * 25 7 6
43 43 H 1.09002 * 109.68214 * 291.06381 * 25 7 6
44 44 H 1.09000 * 109.51578 * 67.61928 * 26 25 7
45 45 H 1.09000 * 109.51391 * 187.77554 * 26 25 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 3.5700 1.4424 0.0006
5 1 3.9344 0.8545 -0.8418
6 6 4.0817 2.8872 -0.1159
7 7 5.5412 2.8734 0.0720
8 6 6.3596 3.4846 -0.8072
9 8 5.8924 4.1316 -1.7243
10 7 7.6962 3.3785 -0.6698
11 6 8.5420 4.0744 -1.5296
12 6 8.0608 4.5108 -2.7662
13 6 8.9041 5.2041 -3.6209
14 6 10.2061 5.4432 -3.2188
15 6 10.6307 4.9782 -1.9620
16 6 11.9576 5.2152 -1.5371
17 1 12.6170 5.8227 -2.1392
18 6 12.4174 4.6623 -0.3356
19 7 11.5925 4.0115 0.4425
20 14 14.2094 4.8546 0.1556
21 1 14.3535 6.0293 1.0526
22 1 14.6620 3.6313 0.8655
23 1 15.0372 5.0560 -1.0607
24 7 9.7856 4.3177 -1.1637
25 6 6.0802 2.1778 1.2514
26 6 5.4708 0.7722 1.3041
27 8 4.0470 0.8731 1.2222
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.8933 -0.5139 -0.8900
32 1 1.8932 -0.5139 0.8900
33 1 1.6767 1.9562 0.8900
34 1 1.6767 1.9563 -0.8900
35 1 3.6186 3.5067 0.6521
36 1 3.8423 3.2842 -1.1024
37 1 8.0689 2.8142 0.0256
38 1 7.0393 4.3105 -3.0541
39 1 8.5517 5.5506 -4.5811
40 1 10.8875 5.9801 -3.8622
41 1 11.9109 3.6288 1.2750
42 1 7.1647 2.1049 1.1708
43 1 5.8148 2.7271 2.1547
44 1 5.8428 0.1823 0.4664
45 1 5.7482 0.2900 2.2415
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881149026.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:41
Heat of formation + Delta-G solvation = -25.268166 kcal
Electronic energy + Delta-G solvation = -26819.748595 eV
Core-core repulsion = 23030.881343 eV
Total energy + Delta-G solvation = -3788.867252 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.60975 -39.06013 -37.70243 -35.44036 -34.59114 -34.36334 -33.23214 -31.56942
-30.38105 -29.29576 -28.35832 -26.39043 -25.34263 -23.63436 -22.55408 -21.59015
-21.30067 -20.98727 -19.41698 -18.26326 -17.48578 -16.89770 -16.37920 -15.77556
-15.44752 -15.25048 -15.03093 -14.79801 -14.61168 -14.45472 -14.14827 -13.75363
-13.45000 -13.30698 -13.06861 -12.88964 -12.41536 -12.19625 -12.13445 -11.92475
-11.68153 -11.37016 -11.27280 -11.24375 -11.12055 -10.94580 -10.89459 -10.67692
-10.61165 -10.19487 -10.12388 -9.84209 -9.24879 -9.05244 -8.52077 -8.02636
-7.67819 -7.08990 -6.42472 -4.50233 2.60511 2.73331 2.94257 3.07923
3.11478 3.24838 3.51747 3.61522 3.94305 4.08695 4.40379 4.66975
4.76564 4.77952 4.79305 4.91744 4.97290 5.03858 5.13677 5.34967
5.37580 5.43337 5.58128 5.59695 5.62462 5.66204 5.78933 5.88406
5.89914 6.00644 6.11586 6.15003 6.34103 6.42900 6.72669 6.81324
6.95532 6.96488 7.02172 7.18116 7.50308 7.59594 7.90715 8.03438
8.15909 8.38012 8.69747 8.86348 9.01144 10.04548 10.30690
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.022440 B = 0.002826 C = 0.002555
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1247.461663 B = 9905.072559 C =10955.392467
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.121 4.121
3 C -0.110 4.110
4 C 0.076 3.924
5 H 0.064 0.936
6 C 0.104 3.896
7 N -0.635 5.635
8 C 0.712 3.288
9 O -0.566 6.566
10 N -0.657 5.657
11 C 0.369 3.631
12 C -0.313 4.313
13 C -0.051 4.051
14 C -0.289 4.289
15 C 0.279 3.721
16 C -0.436 4.436
17 H 0.085 0.915
18 C 0.072 3.928
19 N -0.725 5.725
20 Si 0.907 3.093
21 H -0.271 1.271
22 H -0.277 1.277
23 H -0.261 1.261
24 N -0.508 5.508
25 C 0.074 3.926
26 C 0.050 3.950
27 O -0.375 6.375
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.054 0.946
31 H 0.059 0.941
32 H 0.069 0.931
33 H 0.073 0.927
34 H 0.080 0.920
35 H 0.072 0.928
36 H 0.102 0.898
37 H 0.402 0.598
38 H 0.139 0.861
39 H 0.098 0.902
40 H 0.099 0.901
41 H 0.270 0.730
42 H 0.091 0.909
43 H 0.078 0.922
44 H 0.056 0.944
45 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.746 -8.735 4.360 17.685
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.159 4.159
3 C -0.148 4.148
4 C 0.018 3.982
5 H 0.082 0.918
6 C -0.019 4.019
7 N -0.374 5.374
8 C 0.414 3.586
9 O -0.443 6.443
10 N -0.306 5.306
11 C 0.134 3.866
12 C -0.338 4.338
13 C -0.075 4.075
14 C -0.312 4.312
15 C 0.153 3.847
16 C -0.468 4.468
17 H 0.103 0.897
18 C -0.153 4.153
19 N -0.347 5.347
20 Si 0.731 3.269
21 H -0.196 1.196
22 H -0.202 1.202
23 H -0.185 1.185
24 N -0.227 5.227
25 C -0.050 4.050
26 C -0.028 4.028
27 O -0.294 6.294
28 H 0.072 0.928
29 H 0.072 0.928
30 H 0.073 0.927
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.092 0.908
34 H 0.098 0.902
35 H 0.090 0.910
36 H 0.120 0.880
37 H 0.239 0.761
38 H 0.156 0.844
39 H 0.117 0.883
40 H 0.118 0.882
41 H 0.081 0.919
42 H 0.110 0.890
43 H 0.097 0.903
44 H 0.075 0.925
45 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -14.920 -8.708 4.863 17.947
hybrid contribution 1.056 0.200 -0.223 1.098
sum -13.864 -8.508 4.640 16.915
Atomic orbital electron populations
1.21778 0.95906 1.01545 1.01755 1.21464 0.95570 0.96359 1.02510
1.21599 0.91939 0.98083 1.03172 1.22668 0.94965 0.93135 0.87452
0.91808 1.22222 0.78768 0.96749 1.04211 1.47300 1.06315 1.58400
1.25429 1.15654 0.81067 0.79819 0.82078 1.90787 1.75105 1.45051
1.33350 1.42397 1.03607 1.48553 1.36004 1.18246 0.89608 0.92120
0.86581 1.21835 1.02658 1.13339 0.95976 1.20836 0.93465 0.96014
0.97217 1.21718 0.96634 1.12634 1.00226 1.18171 0.92031 0.87447
0.87075 1.19548 0.95326 1.27492 1.04431 0.89682 1.26033 0.99339
0.93906 0.95991 1.70124 1.34904 1.21818 1.07839 0.86329 0.82544
0.78516 0.79498 1.19581 1.20177 1.18502 1.68008 1.00524 1.20617
1.33528 1.22367 0.99619 0.93848 0.89133 1.22957 0.81372 0.95439
1.03002 1.87935 1.20656 1.82613 1.38192 0.92808 0.92849 0.92725
0.92209 0.91202 0.90797 0.90190 0.90989 0.87962 0.76092 0.84386
0.88346 0.88248 0.91935 0.89038 0.90347 0.92538 0.87551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.02 9.91 37.16 0.37 -0.66 16
2 C -0.12 -0.96 5.83 -26.73 -0.16 -1.11 16
3 C -0.11 -0.92 4.93 -26.74 -0.13 -1.05 16
4 C 0.08 0.80 2.79 -26.36 -0.07 0.72 16
5 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
6 C 0.10 1.29 5.94 -3.31 -0.02 1.27 16
7 N -0.63 -9.33 3.01 -177.75 -0.54 -9.87 16
8 C 0.71 13.78 8.21 -86.92 -0.71 13.07 16
9 O -0.57 -12.60 12.49 5.30 0.07 -12.54 16
10 N -0.66 -13.68 5.32 -15.79 -0.08 -13.76 16
11 C 0.37 9.33 7.51 -155.00 -1.16 8.17 16
12 C -0.31 -7.83 8.90 -38.89 -0.35 -8.17 16
13 C -0.05 -1.22 10.15 -39.39 -0.40 -1.62 16
14 C -0.29 -7.35 9.83 -38.66 -0.38 -7.73 16
15 C 0.28 7.76 6.55 -85.00 -0.56 7.20 16
16 C -0.44 -11.67 9.13 -37.74 -0.34 -12.02 16
17 H 0.09 2.13 7.85 -52.49 -0.41 1.72 16
18 C 0.07 1.80 5.49 -17.34 -0.10 1.71 16
19 N -0.72 -18.76 11.48 55.55 0.64 -18.12 16
20 Si 0.91 18.43 29.56 -169.99 -5.03 13.40 16
21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16
22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16
23 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16
24 N -0.51 -13.97 7.91 -10.26 -0.08 -14.06 16
25 C 0.07 0.86 6.64 -3.54 -0.02 0.84 16
26 C 0.05 0.49 6.99 37.31 0.26 0.75 16
27 O -0.38 -4.10 9.92 -35.23 -0.35 -4.45 16
28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
32 H 0.07 0.61 7.82 -51.93 -0.41 0.20 16
33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
36 H 0.10 1.37 7.12 -51.93 -0.37 1.00 16
37 H 0.40 7.50 6.35 -40.82 -0.26 7.24 16
38 H 0.14 3.43 5.16 -52.93 -0.27 3.16 16
39 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16
40 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16
41 H 0.27 6.29 8.29 -40.82 -0.34 5.95 16
42 H 0.09 1.06 5.65 -51.93 -0.29 0.77 16
43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
45 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16
LS Contribution 363.73 15.07 5.48 5.48
Total: -1.00 -31.83 363.73 -10.31 -42.14
By element:
Atomic # 1 Polarization: 17.04 SS G_CDS: -6.64 Total: 10.39 kcal
Atomic # 6 Polarization: 5.15 SS G_CDS: -3.78 Total: 1.38 kcal
Atomic # 7 Polarization: -55.74 SS G_CDS: -0.06 Total: -55.81 kcal
Atomic # 8 Polarization: -16.71 SS G_CDS: -0.28 Total: -16.99 kcal
Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -31.83 -10.31 -42.14 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881149026.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.872 kcal
(2) G-P(sol) polarization free energy of solvation -31.831 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.959 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.268 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds