Wall clock time and date at job start Tue Mar 31 2020 13:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50701 * 120.00227 * 2 1 4 4 N 1.46500 * 109.47082 * 124.99585 * 3 2 1 5 5 C 1.35531 * 125.67904 * 262.31780 * 4 3 2 6 6 C 1.35452 * 108.87472 * 180.30894 * 5 4 3 7 7 C 1.39841 * 107.86317 * 359.72498 * 6 5 4 8 8 C 1.37652 * 125.67652 * 82.16379 * 4 3 2 9 9 C 1.46674 * 126.23541 * 359.95921 * 8 4 3 10 10 O 1.21699 * 120.00155 * 4.72427 * 9 8 4 11 11 N 1.34770 * 120.00055 * 184.71983 * 9 8 4 12 12 C 1.46504 * 119.99844 * 174.98999 * 11 9 8 13 13 C 1.53002 * 109.46992 * 180.02562 * 12 11 9 14 14 H 1.09001 * 110.64288 * 303.30832 * 13 12 11 15 15 C 1.54330 * 110.72096 * 66.45362 * 13 12 11 16 16 N 1.47019 * 107.40142 * 140.47507 * 15 13 12 17 17 C 1.36935 * 125.64618 * 181.09837 * 16 15 13 18 18 H 1.08000 * 120.00265 * 0.02562 * 17 16 15 19 19 C 1.38818 * 119.99956 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99995 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47023 * 90.00259 * 21 19 17 23 23 H 1.48499 * 109.47005 * 209.99981 * 21 19 17 24 24 H 1.48494 * 109.47179 * 330.00008 * 21 19 17 25 25 C 1.47746 * 108.53028 * 1.18640 * 16 15 13 26 26 C 1.54909 * 104.84033 * 335.74726 * 25 16 15 27 27 H 1.09003 * 111.03732 * 155.19034 * 26 25 16 28 28 O 1.42908 * 111.00314 * 279.02290 * 26 25 16 29 29 H 1.08001 * 119.99721 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00226 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99905 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.46741 * 4.99579 * 3 2 1 33 33 H 1.08998 * 109.46558 * 244.99531 * 3 2 1 34 34 H 1.08003 * 125.56409 * 359.97438 * 5 4 3 35 35 H 1.08001 * 126.07460 * 179.77028 * 6 5 4 36 36 H 1.07997 * 126.45762 * 179.97438 * 7 6 5 37 37 H 0.96999 * 120.00585 * 354.98747 * 11 9 8 38 38 H 1.08994 * 109.47451 * 60.00501 * 12 11 9 39 39 H 1.09002 * 109.47012 * 299.99712 * 12 11 9 40 40 H 1.08999 * 109.87987 * 259.97126 * 15 13 12 41 41 H 1.09000 * 109.87924 * 20.98463 * 15 13 12 42 42 H 0.96993 * 120.00018 * 180.02562 * 20 19 17 43 43 H 1.08998 * 110.28973 * 216.94131 * 25 16 15 44 44 H 1.09000 * 110.53127 * 94.67616 * 25 16 15 45 45 H 0.96699 * 113.99751 * 292.20001 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.7667 1.9275 2.3276 6 6 3.8520 1.7503 3.1184 7 6 4.7935 1.0112 2.3953 8 6 4.2427 0.7537 1.1578 9 6 4.8750 0.0055 0.0662 10 8 4.3223 -0.0771 -1.0149 11 7 6.0681 -0.5904 0.2602 12 6 6.6481 -1.4284 -0.7923 13 6 7.9946 -1.9808 -0.3202 14 1 8.6659 -1.1692 -0.0396 15 6 7.8006 -2.9605 0.8563 16 7 8.7392 -4.0750 0.6598 17 6 8.8647 -5.1663 1.4774 18 1 8.2406 -5.2589 2.3540 19 6 9.7940 -6.1535 1.1796 20 7 10.5549 -6.0403 0.1116 21 14 9.9648 -7.6425 2.2945 22 1 9.0473 -8.7148 1.8323 23 1 11.3647 -8.1358 2.2506 24 1 9.6180 -7.2605 3.6870 25 6 9.5237 -3.8176 -0.5654 26 6 8.6353 -2.8747 -1.4147 27 1 9.2393 -2.2804 -2.1004 28 8 7.6369 -3.6119 -2.1232 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6214 1.4024 -0.9314 34 1 1.8691 2.4613 2.6031 35 1 3.9693 2.1146 4.1283 36 1 5.7685 0.7009 2.7409 37 1 6.5428 -0.4646 1.0967 38 1 6.7954 -0.8314 -1.6922 39 1 5.9730 -2.2557 -1.0113 40 1 8.0162 -2.4560 1.7982 41 1 6.7769 -3.3347 0.8622 42 1 11.2040 -6.7303 -0.0967 43 1 9.7067 -4.7498 -1.0998 44 1 10.4674 -3.3306 -0.3198 45 1 7.9899 -4.1850 -2.8174 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958138490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:29 Heat of formation + Delta-G solvation = 17.608362 kcal Electronic energy + Delta-G solvation = -26741.639346 eV Core-core repulsion = 22954.631359 eV Total energy + Delta-G solvation = -3787.007986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.50498 -39.18688 -38.06577 -35.55352 -34.80188 -34.45881 -32.24545 -31.47443 -30.23353 -28.95138 -27.60602 -26.25241 -25.48349 -23.78733 -22.21449 -20.77500 -20.46983 -20.35441 -19.78833 -19.15320 -17.99790 -17.29560 -16.41826 -15.96948 -15.75857 -15.41806 -15.04899 -14.83873 -14.50648 -14.18657 -14.09130 -13.80264 -13.62278 -13.34366 -13.06861 -12.78195 -12.66727 -12.47101 -12.31311 -12.05598 -11.92039 -11.51390 -11.35288 -11.23495 -10.79241 -10.65329 -10.36531 -10.24905 -10.02907 -9.89153 -9.81846 -9.70434 -9.10496 -8.93863 -8.88563 -8.67905 -8.28912 -6.83495 -5.68623 -3.08110 1.42213 1.77891 2.64506 2.70246 3.39663 3.41146 3.44772 3.46318 3.48397 4.43324 4.47124 4.58231 4.71417 4.80990 4.85463 5.00742 5.15902 5.24864 5.27401 5.32897 5.37459 5.41900 5.52254 5.59178 5.62332 5.91235 5.94451 6.02772 6.08874 6.13270 6.26011 6.32288 6.34883 6.44588 6.51672 6.62044 6.71138 6.86963 6.87465 7.08661 7.28153 7.58097 7.61560 7.75493 8.23361 8.28389 8.37579 9.18825 9.80539 10.44973 11.36769 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017065 B = 0.002821 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.418316 B = 9922.185709 C =10318.947555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.129 3.871 4 N -0.406 5.406 5 C 0.012 3.988 6 C -0.207 4.207 7 C -0.141 4.141 8 C -0.047 4.047 9 C 0.585 3.415 10 O -0.552 6.552 11 N -0.714 5.714 12 C 0.143 3.857 13 C -0.106 4.106 14 H 0.086 0.914 15 C 0.144 3.856 16 N -0.597 5.597 17 C -0.217 4.217 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.926 5.926 21 Si 0.915 3.085 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.126 3.874 26 C 0.083 3.917 27 H 0.055 0.945 28 O -0.558 6.558 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.166 0.834 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.402 0.598 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.019 0.981 41 H 0.028 0.972 42 H 0.252 0.748 43 H 0.111 0.889 44 H 0.020 0.980 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.930 16.848 0.206 21.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C 0.008 3.992 4 N -0.079 5.079 5 C -0.123 4.123 6 C -0.231 4.231 7 C -0.168 4.168 8 C -0.160 4.160 9 C 0.372 3.628 10 O -0.432 6.432 11 N -0.364 5.364 12 C 0.021 3.979 13 C -0.126 4.126 14 H 0.105 0.895 15 C 0.018 3.982 16 N -0.323 5.323 17 C -0.346 4.346 18 H 0.095 0.905 19 C -0.208 4.208 20 N -0.575 5.575 21 Si 0.746 3.254 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.001 3.999 26 C 0.022 3.978 27 H 0.073 0.927 28 O -0.363 6.363 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.132 0.868 34 H 0.183 0.817 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.237 0.763 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.037 0.963 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.129 0.871 44 H 0.038 0.962 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.807 16.868 -0.449 22.449 hybrid contribution 0.786 -1.003 0.745 1.476 sum -14.020 15.866 0.296 21.175 Atomic orbital electron populations 1.23878 0.95462 1.02251 0.99931 1.23117 0.96000 0.98583 1.00212 1.21131 0.91806 0.96640 0.89605 1.43958 1.12406 1.39490 1.12028 1.21978 1.01316 1.03480 0.85477 1.20810 0.94659 1.06942 1.00711 1.21398 1.00412 1.02416 0.92543 1.20154 0.88850 1.09326 0.97675 1.16975 0.81133 0.78562 0.86096 1.90783 1.64045 1.62260 1.26117 1.45774 1.20312 1.49906 1.20430 1.21251 0.94227 0.93479 0.88986 1.22514 0.95545 0.97411 0.97113 0.89549 1.21307 0.94348 0.88699 0.93833 1.44404 1.40788 1.20159 1.26971 1.19089 1.16103 0.95927 1.03436 0.90456 1.24760 0.98590 0.99008 0.98411 1.69743 1.26049 1.34724 1.27015 0.86054 0.76947 0.82688 0.79725 1.21603 1.21691 1.20731 1.22626 0.90737 0.98870 0.87689 1.23189 0.89513 0.92931 0.92160 0.92746 1.86392 1.35341 1.61684 1.52879 0.88414 0.87790 0.86533 0.89029 0.86842 0.81706 0.84063 0.83795 0.76317 0.91664 0.90086 0.96277 0.95393 0.93768 0.87121 0.96243 0.77827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 14.32 29.01 0.42 -1.04 16 2 C -0.16 -1.69 9.75 -36.03 -0.35 -2.04 16 3 C 0.13 1.29 5.84 -5.19 -0.03 1.26 16 4 N -0.41 -4.66 2.75 -114.15 -0.31 -4.98 16 5 C 0.01 0.12 11.36 -16.91 -0.19 -0.07 16 6 C -0.21 -2.09 10.81 -39.98 -0.43 -2.52 16 7 C -0.14 -1.62 10.36 -39.11 -0.41 -2.03 16 8 C -0.05 -0.62 6.88 -81.98 -0.56 -1.18 16 9 C 0.58 8.84 7.77 -12.86 -0.10 8.74 16 10 O -0.55 -9.67 14.75 5.19 0.08 -9.59 16 11 N -0.71 -10.08 5.38 -61.62 -0.33 -10.42 16 12 C 0.14 2.29 4.59 -4.04 -0.02 2.27 16 13 C -0.11 -1.81 2.95 -88.78 -0.26 -2.07 16 14 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 15 C 0.14 2.97 6.52 -3.06 -0.02 2.95 16 16 N -0.60 -15.14 3.40 -169.81 -0.58 -15.72 16 17 C -0.22 -6.05 10.28 -15.06 -0.15 -6.21 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 20 N -0.93 -26.57 10.11 55.49 0.56 -26.01 16 21 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 C 0.13 2.94 5.65 -2.35 -0.01 2.93 16 26 C 0.08 1.52 4.17 -24.58 -0.10 1.41 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 O -0.56 -10.30 12.22 -35.23 -0.43 -10.73 16 29 H 0.10 0.60 7.84 -52.49 -0.41 0.19 16 30 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.09 0.64 7.76 -51.93 -0.40 0.23 16 33 H 0.11 1.32 6.68 -51.93 -0.35 0.98 16 34 H 0.17 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.14 1.40 7.45 -52.49 -0.39 1.01 16 37 H 0.40 4.91 7.23 -40.82 -0.30 4.62 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.51 7.44 -51.93 -0.39 1.12 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.61 7.76 -51.93 -0.40 0.21 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.11 2.90 5.89 -51.93 -0.31 2.59 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.37 5.65 9.12 45.56 0.42 6.07 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -33.54 372.46 -8.63 -42.17 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -5.88 Total: 10.65 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.33 Total: 1.96 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.66 Total: -57.12 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.35 Total: -20.32 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.54 -8.63 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958138490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.782 kcal (2) G-P(sol) polarization free energy of solvation -33.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds