Wall clock time and date at job start Tue Mar 31 2020 13:29:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.47133 * 2 1
4 4 H 1.09005 * 109.49504 * 304.94219 * 3 2 1
5 5 C 1.53196 * 109.49369 * 64.99814 * 3 2 1
6 6 N 1.46935 * 108.77035 * 174.58737 * 5 3 2
7 7 C 1.34781 * 120.62769 * 126.37517 * 6 5 3
8 8 O 1.21521 * 119.99927 * 352.26768 * 7 6 5
9 9 C 1.48153 * 119.99882 * 172.26758 * 7 6 5
10 10 C 1.39165 * 119.68630 * 170.48289 * 9 7 6
11 11 C 1.38745 * 119.18142 * 179.73458 * 10 9 7
12 12 C 1.38370 * 118.55792 * 0.52468 * 11 10 9
13 13 C 1.39244 * 119.30721 * 359.73553 * 12 11 10
14 14 O 1.35669 * 119.61424 * 180.02562 * 13 12 11
15 15 N 1.31924 * 120.77074 * 359.97438 * 13 12 11
16 16 C 1.46918 * 118.73811 * 306.39291 * 6 5 3
17 17 C 1.53189 * 108.77805 * 53.61291 * 16 6 5
18 18 C 1.53033 * 109.50068 * 184.83681 * 3 2 1
19 19 H 1.09006 * 109.45949 * 58.66508 * 18 3 2
20 20 N 1.46494 * 109.46178 * 298.70753 * 18 3 2
21 21 C 1.36942 * 120.00121 * 154.99950 * 20 18 3
22 22 H 1.07998 * 120.00078 * 359.97438 * 21 20 18
23 23 C 1.38809 * 119.99986 * 179.97438 * 21 20 18
24 24 N 1.31617 * 119.99993 * 179.97438 * 23 21 20
25 25 Si 1.86807 * 120.00134 * 0.02562 * 23 21 20
26 26 H 1.48495 * 109.47485 * 89.99579 * 25 23 21
27 27 H 1.48502 * 109.46845 * 209.99770 * 25 23 21
28 28 H 1.48505 * 109.46733 * 329.99380 * 25 23 21
29 29 H 1.08992 * 109.47180 * 59.99843 * 1 2 3
30 30 H 1.09007 * 109.46777 * 299.99735 * 1 2 3
31 31 H 1.09007 * 109.46746 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47474 * 119.99787 * 2 1 3
33 33 H 1.09000 * 109.47399 * 240.00032 * 2 1 3
34 34 H 1.08996 * 109.59001 * 294.37717 * 5 3 2
35 35 H 1.09004 * 109.58626 * 54.66206 * 5 3 2
36 36 H 1.07999 * 120.40771 * 359.97438 * 10 9 7
37 37 H 1.08002 * 120.71896 * 180.26046 * 11 10 9
38 38 H 1.08004 * 120.34812 * 179.75202 * 12 11 10
39 39 H 0.96698 * 114.00194 * 269.97903 * 14 13 12
40 40 H 1.09004 * 109.58317 * 173.39656 * 16 6 5
41 41 H 1.09001 * 109.59182 * 293.82044 * 16 6 5
42 42 H 1.09000 * 109.50053 * 65.31049 * 17 16 6
43 43 H 1.08999 * 109.49979 * 185.38292 * 17 16 6
44 44 H 0.97005 * 120.00180 * 334.99153 * 20 18 3
45 45 H 0.97008 * 119.99900 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6064 1.9817 -0.8423
5 6 1.6350 2.1280 1.3088
6 7 2.2415 3.4657 1.3493
7 6 1.4814 4.5581 1.5629
8 8 0.2703 4.4609 1.5841
9 6 2.1225 5.8772 1.7719
10 6 1.3402 7.0280 1.7934
11 6 1.9508 8.2574 1.9954
12 6 3.3244 8.2950 2.1580
13 6 4.0480 7.1059 2.1201
14 8 5.3950 7.1355 2.2794
15 7 3.4390 5.9509 1.9321
16 6 3.6921 3.5899 1.1522
17 6 4.0740 2.8881 -0.1548
18 6 3.5655 1.4450 -0.1216
19 1 3.8574 0.9360 -1.0403
20 7 4.1480 0.7486 1.0280
21 6 5.3861 0.1728 0.9245
22 1 5.9331 0.2318 -0.0049
23 6 5.9382 -0.4866 2.0140
24 7 7.1280 -1.0405 1.9143
25 14 4.9919 -0.5893 3.6214
26 1 4.1500 -1.8125 3.6229
27 1 5.9483 -0.6452 4.7561
28 1 4.1253 0.6083 3.7629
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 0.5138 0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 1.8934 -0.5138 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 0.5496 2.2173 1.3539
35 1 1.9886 1.5384 2.1547
36 1 0.2706 6.9645 1.6583
37 1 1.3672 9.1658 2.0208
38 1 3.8300 9.2367 2.3131
39 1 5.8868 7.2332 1.4526
40 1 3.9640 4.6439 1.0940
41 1 4.2156 3.1209 1.9853
42 1 3.6218 3.4139 -0.9957
43 1 5.1584 2.8898 -0.2653
44 1 3.6566 0.6953 1.8628
45 1 7.5140 -1.5010 2.6759
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037819090.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:06
Heat of formation + Delta-G solvation = -5.021970 kcal
Electronic energy + Delta-G solvation = -28033.137003 eV
Core-core repulsion = 24245.147692 eV
Total energy + Delta-G solvation = -3787.989311 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.15420 -39.69814 -38.03388 -37.06320 -34.68536 -33.82199 -32.87993 -31.70189
-30.72327 -29.75301 -28.74067 -25.99016 -24.04681 -23.98877 -23.35447 -23.01065
-20.84120 -20.52081 -18.89647 -18.33664 -17.88042 -17.37709 -16.71888 -16.22175
-15.85111 -15.59019 -15.24431 -14.67207 -14.47683 -14.12537 -13.82613 -13.61511
-13.49273 -13.33314 -13.21626 -12.87934 -12.55009 -12.40975 -12.37731 -12.14354
-11.78135 -11.57648 -11.22162 -11.09728 -10.88124 -10.79148 -10.42174 -10.38906
-10.30966 -10.17645 -10.16872 -9.75156 -9.52214 -9.29333 -9.07335 -8.70304
-8.28232 -7.22074 -5.75099 -3.09396 0.35144 0.78394 2.56868 3.00247
3.33689 3.38448 3.41456 3.47115 3.54328 4.20816 4.46551 4.60776
4.62706 4.69794 4.94652 5.10259 5.13371 5.16806 5.29794 5.43159
5.56276 5.56398 5.60077 5.66894 5.73844 5.75709 5.81786 5.86836
5.98664 6.06249 6.10155 6.21905 6.29877 6.35033 6.46022 6.52968
6.64016 6.73037 6.75727 6.85896 6.99500 7.18908 7.41326 7.63705
8.01688 8.19519 8.44242 9.22927 9.95901 10.16040 11.43517
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012225 B = 0.004862 C = 0.003902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2289.834563 B = 5756.999995 C = 7174.143032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.111 4.111
3 C -0.105 4.105
4 H 0.072 0.928
5 C 0.113 3.887
6 N -0.577 5.577
7 C 0.564 3.436
8 O -0.545 6.545
9 C 0.111 3.889
10 C -0.125 4.125
11 C -0.065 4.065
12 C -0.168 4.168
13 C 0.307 3.693
14 O -0.477 6.477
15 N -0.461 5.461
16 C 0.079 3.921
17 C -0.150 4.150
18 C 0.183 3.817
19 H 0.058 0.942
20 N -0.743 5.743
21 C -0.237 4.237
22 H 0.090 0.910
23 C 0.007 3.993
24 N -0.935 5.935
25 Si 0.877 3.123
26 H -0.284 1.284
27 H -0.292 1.292
28 H -0.278 1.278
29 H 0.050 0.950
30 H 0.052 0.948
31 H 0.050 0.950
32 H 0.070 0.930
33 H 0.067 0.933
34 H 0.089 0.911
35 H 0.068 0.932
36 H 0.152 0.848
37 H 0.147 0.853
38 H 0.145 0.855
39 H 0.404 0.596
40 H 0.136 0.864
41 H 0.075 0.925
42 H 0.046 0.954
43 H 0.077 0.923
44 H 0.360 0.640
45 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.986 18.691 -3.397 21.945
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.149 4.149
3 C -0.125 4.125
4 H 0.090 0.910
5 C -0.009 4.009
6 N -0.307 5.307
7 C 0.350 3.650
8 O -0.424 6.424
9 C -0.026 4.026
10 C -0.145 4.145
11 C -0.091 4.091
12 C -0.189 4.189
13 C 0.126 3.874
14 O -0.284 6.284
15 N -0.183 5.183
16 C -0.043 4.043
17 C -0.191 4.191
18 C 0.073 3.927
19 H 0.076 0.924
20 N -0.386 5.386
21 C -0.367 4.367
22 H 0.108 0.892
23 C -0.189 4.189
24 N -0.583 5.583
25 Si 0.707 3.293
26 H -0.211 1.211
27 H -0.218 1.218
28 H -0.205 1.205
29 H 0.069 0.931
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.088 0.912
33 H 0.085 0.915
34 H 0.108 0.892
35 H 0.086 0.914
36 H 0.170 0.830
37 H 0.165 0.835
38 H 0.163 0.837
39 H 0.262 0.738
40 H 0.152 0.848
41 H 0.093 0.907
42 H 0.065 0.935
43 H 0.096 0.904
44 H 0.193 0.807
45 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -10.979 17.711 -2.882 21.036
hybrid contribution -0.549 0.550 0.883 1.176
sum -11.528 18.261 -1.998 21.688
Atomic orbital electron populations
1.21861 0.96621 1.01149 1.01487 1.21437 0.94473 0.95699 1.03319
1.21791 0.97575 0.96130 0.97019 0.90983 1.21782 0.99045 0.81733
0.98307 1.48058 1.09778 1.05724 1.67114 1.17859 0.86113 0.83134
0.77911 1.90750 1.13092 1.85303 1.53227 1.21046 0.88217 0.94753
0.98605 1.22116 1.02336 0.91626 0.98467 1.21545 0.94027 0.98296
0.95196 1.22345 0.95258 0.99209 1.02132 1.19412 0.85460 0.87867
0.94612 1.84831 1.12861 1.95118 1.35629 1.67395 1.10590 1.27919
1.12378 1.22986 0.77401 1.05409 0.98504 1.22532 1.01994 0.98461
0.96115 1.20212 0.89336 0.91043 0.92065 0.92390 1.42824 1.19691
1.65793 1.10330 1.19050 0.92152 1.26374 0.99135 0.89208 1.24605
0.96443 1.00392 0.97414 1.69690 1.16347 1.41467 1.30757 0.86677
0.79510 0.77764 0.85317 1.21104 1.21796 1.20469 0.93096 0.92866
0.93049 0.91160 0.91468 0.89241 0.91374 0.83014 0.83527 0.83699
0.73792 0.84758 0.90710 0.93516 0.90450 0.80650 0.93149
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 9.67 37.16 0.36 -1.63 16
2 C -0.11 -1.71 5.19 -26.73 -0.14 -1.84 16
3 C -0.11 -1.68 2.14 -90.50 -0.19 -1.88 16
4 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
5 C 0.11 1.90 5.03 -3.70 -0.02 1.88 16
6 N -0.58 -9.73 2.97 -173.76 -0.52 -10.24 16
7 C 0.56 9.22 7.65 -12.19 -0.09 9.13 16
8 O -0.55 -9.74 15.79 5.35 0.08 -9.65 16
9 C 0.11 1.53 6.58 -83.02 -0.55 0.98 16
10 C -0.12 -1.31 9.62 -39.05 -0.38 -1.69 16
11 C -0.07 -0.50 10.16 -39.35 -0.40 -0.90 16
12 C -0.17 -1.36 10.04 -39.16 -0.39 -1.75 16
13 C 0.31 3.39 7.74 -17.14 -0.13 3.26 16
14 O -0.48 -4.80 13.56 -18.71 -0.25 -5.05 16
15 N -0.46 -6.32 6.15 -9.88 -0.06 -6.38 16
16 C 0.08 1.35 5.63 -3.72 -0.02 1.33 16
17 C -0.15 -2.57 5.78 -26.61 -0.15 -2.72 16
18 C 0.18 3.41 2.53 -67.90 -0.17 3.24 16
19 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16
20 N -0.74 -16.74 3.52 -53.39 -0.19 -16.93 16
21 C -0.24 -6.44 10.41 -15.06 -0.16 -6.59 16
22 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16
23 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16
24 N -0.93 -29.05 13.97 55.49 0.78 -28.28 16
25 Si 0.88 22.23 27.74 -169.99 -4.71 17.52 16
26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16
27 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16
28 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.05 0.68 6.70 -51.93 -0.35 0.34 16
31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16
33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16
34 H 0.09 1.45 5.72 -51.93 -0.30 1.16 16
35 H 0.07 1.24 6.65 -51.93 -0.35 0.89 16
36 H 0.15 1.47 7.66 -52.49 -0.40 1.06 16
37 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16
38 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16
39 H 0.40 2.05 9.06 45.56 0.41 2.46 16
40 H 0.14 2.13 4.01 -84.95 -0.34 1.79 16
41 H 0.07 1.51 7.74 -51.93 -0.40 1.11 16
42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16
44 H 0.36 8.22 3.81 -40.82 -0.16 8.06 16
45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
LS Contribution 356.55 15.07 5.37 5.37
Total: -1.00 -33.90 356.55 -7.70 -41.60
By element:
Atomic # 1 Polarization: 16.79 SS G_CDS: -5.67 Total: 11.12 kcal
Atomic # 6 Polarization: 3.45 SS G_CDS: -2.53 Total: 0.92 kcal
Atomic # 7 Polarization: -61.84 SS G_CDS: 0.01 Total: -61.83 kcal
Atomic # 8 Polarization: -14.53 SS G_CDS: -0.17 Total: -14.70 kcal
Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -33.90 -7.70 -41.60 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037819090.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.578 kcal
(2) G-P(sol) polarization free energy of solvation -33.898 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.022 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds