Wall clock time and date at job start Tue Mar 31 2020 13:29:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53004 * 109.47133 * 2 1
4 4 H 1.09005 * 109.49504 * 304.94219 * 3 2 1
5 5 C 1.53196 * 109.49369 * 64.99814 * 3 2 1
6 6 N 1.46935 * 108.77035 * 174.58737 * 5 3 2
7 7 C 1.34781 * 120.62769 * 126.37517 * 6 5 3
8 8 O 1.21521 * 119.99927 * 352.26768 * 7 6 5
9 9 C 1.48153 * 119.99882 * 172.26758 * 7 6 5
10 10 C 1.39165 * 119.68630 * 170.48289 * 9 7 6
11 11 C 1.38745 * 119.18142 * 179.73458 * 10 9 7
12 12 C 1.38370 * 118.55792 * 0.52468 * 11 10 9
13 13 C 1.39244 * 119.30721 * 359.73553 * 12 11 10
14 14 O 1.35669 * 119.61424 * 180.02562 * 13 12 11
15 15 N 1.31924 * 120.77074 * 359.97438 * 13 12 11
16 16 C 1.46918 * 118.73811 * 306.39291 * 6 5 3
17 17 C 1.53189 * 108.77805 * 53.61291 * 16 6 5
18 18 C 1.53033 * 109.50068 * 184.83681 * 3 2 1
19 19 H 1.09006 * 109.45949 * 58.66508 * 18 3 2
20 20 N 1.46494 * 109.46178 * 298.70753 * 18 3 2
21 21 C 1.36942 * 120.00121 * 154.99950 * 20 18 3
22 22 H 1.07998 * 120.00078 * 359.97438 * 21 20 18
23 23 C 1.38809 * 119.99986 * 179.97438 * 21 20 18
24 24 N 1.31617 * 119.99993 * 179.97438 * 23 21 20
25 25 Si 1.86807 * 120.00134 * 0.02562 * 23 21 20
26 26 H 1.48495 * 109.47485 * 89.99579 * 25 23 21
27 27 H 1.48502 * 109.46845 * 209.99770 * 25 23 21
28 28 H 1.48505 * 109.46733 * 329.99380 * 25 23 21
29 29 H 1.08992 * 109.47180 * 59.99843 * 1 2 3
30 30 H 1.09007 * 109.46777 * 299.99735 * 1 2 3
31 31 H 1.09007 * 109.46746 * 180.02562 * 1 2 3
32 32 H 1.09004 * 109.47474 * 119.99787 * 2 1 3
33 33 H 1.09000 * 109.47399 * 240.00032 * 2 1 3
34 34 H 1.08996 * 109.59001 * 294.37717 * 5 3 2
35 35 H 1.09004 * 109.58626 * 54.66206 * 5 3 2
36 36 H 1.07999 * 120.40771 * 359.97438 * 10 9 7
37 37 H 1.08002 * 120.71896 * 180.26046 * 11 10 9
38 38 H 1.08004 * 120.34812 * 179.75202 * 12 11 10
39 39 H 0.96698 * 114.00194 * 269.97903 * 14 13 12
40 40 H 1.09004 * 109.58317 * 173.39656 * 16 6 5
41 41 H 1.09001 * 109.59182 * 293.82044 * 16 6 5
42 42 H 1.09000 * 109.50053 * 65.31049 * 17 16 6
43 43 H 1.08999 * 109.49979 * 185.38292 * 17 16 6
44 44 H 0.97005 * 120.00180 * 334.99153 * 20 18 3
45 45 H 0.97008 * 119.99900 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6064 1.9817 -0.8423
5 6 1.6350 2.1280 1.3088
6 7 2.2415 3.4657 1.3493
7 6 1.4814 4.5581 1.5629
8 8 0.2703 4.4609 1.5841
9 6 2.1225 5.8772 1.7719
10 6 1.3402 7.0280 1.7934
11 6 1.9508 8.2574 1.9954
12 6 3.3244 8.2950 2.1580
13 6 4.0480 7.1059 2.1201
14 8 5.3950 7.1355 2.2794
15 7 3.4390 5.9509 1.9321
16 6 3.6921 3.5899 1.1522
17 6 4.0740 2.8881 -0.1548
18 6 3.5655 1.4450 -0.1216
19 1 3.8574 0.9360 -1.0403
20 7 4.1480 0.7486 1.0280
21 6 5.3861 0.1728 0.9245
22 1 5.9331 0.2318 -0.0049
23 6 5.9382 -0.4866 2.0140
24 7 7.1280 -1.0405 1.9143
25 14 4.9919 -0.5893 3.6214
26 1 4.1500 -1.8125 3.6229
27 1 5.9483 -0.6452 4.7561
28 1 4.1253 0.6083 3.7629
29 1 -0.3633 0.5138 -0.8899
30 1 -0.3633 0.5138 0.8901
31 1 -0.3633 -1.0277 0.0005
32 1 1.8934 -0.5138 0.8900
33 1 1.8934 -0.5138 -0.8900
34 1 0.5496 2.2173 1.3539
35 1 1.9886 1.5384 2.1547
36 1 0.2706 6.9645 1.6583
37 1 1.3672 9.1658 2.0208
38 1 3.8300 9.2367 2.3131
39 1 5.8868 7.2332 1.4526
40 1 3.9640 4.6439 1.0940
41 1 4.2156 3.1209 1.9853
42 1 3.6218 3.4139 -0.9957
43 1 5.1584 2.8898 -0.2653
44 1 3.6566 0.6953 1.8628
45 1 7.5140 -1.5010 2.6759
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037819090.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:05
Heat of formation + Delta-G solvation = -30.038081 kcal
Electronic energy + Delta-G solvation = -28034.221783 eV
Core-core repulsion = 24245.147692 eV
Total energy + Delta-G solvation = -3789.074091 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.13257 -40.84172 -39.33711 -37.89984 -36.08732 -35.44417 -33.75742 -33.52819
-31.58290 -31.47605 -30.03511 -27.22699 -25.44102 -25.14586 -24.70822 -24.21567
-22.18639 -21.60579 -20.16376 -19.85312 -19.37857 -18.58445 -17.57964 -17.12676
-16.94660 -16.77726 -16.57473 -16.17094 -16.02794 -15.54398 -15.09120 -14.94814
-14.77667 -14.56278 -14.46228 -14.26298 -13.92835 -13.76359 -13.30532 -13.19398
-13.04630 -12.96192 -12.76519 -12.68371 -12.46557 -12.19012 -12.07187 -11.88819
-11.63729 -11.55492 -11.49774 -11.18527 -11.03933 -10.96130 -10.12363 -9.88288
-9.65241 -9.21628 -8.00421 -5.30196 -0.47546 0.06632 1.33261 1.34310
1.40436 1.55020 1.85841 2.46445 2.49367 2.63976 3.26336 3.32202
3.59489 3.68024 3.80244 3.90847 3.93116 4.00300 4.02691 4.21397
4.34101 4.36569 4.41736 4.47301 4.52544 4.59074 4.63264 4.80645
4.91381 4.95111 5.03294 5.04518 5.07996 5.12904 5.22093 5.24066
5.30660 5.36287 5.46797 5.53612 5.68451 5.82003 6.23809 6.29759
6.48723 6.72301 6.98726 7.10405 7.87704 8.06030 9.21658
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012225 B = 0.004862 C = 0.003902
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2289.834563 B = 5756.999995 C = 7174.143032
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.110 4.110
3 C -0.093 4.093
4 H 0.090 0.910
5 C 0.115 3.885
6 N -0.585 5.585
7 C 0.562 3.438
8 O -0.565 6.565
9 C 0.079 3.921
10 C -0.121 4.121
11 C -0.049 4.049
12 C -0.148 4.148
13 C 0.293 3.707
14 O -0.491 6.491
15 N -0.496 5.496
16 C 0.089 3.911
17 C -0.142 4.142
18 C 0.176 3.824
19 H 0.051 0.949
20 N -0.741 5.741
21 C -0.211 4.211
22 H 0.063 0.937
23 C -0.056 4.056
24 N -0.983 5.983
25 Si 0.937 3.063
26 H -0.278 1.278
27 H -0.299 1.299
28 H -0.267 1.267
29 H 0.064 0.936
30 H 0.052 0.948
31 H 0.061 0.939
32 H 0.047 0.953
33 H 0.066 0.934
34 H 0.097 0.903
35 H 0.049 0.951
36 H 0.158 0.842
37 H 0.192 0.808
38 H 0.181 0.819
39 H 0.422 0.578
40 H 0.154 0.846
41 H 0.037 0.963
42 H 0.072 0.928
43 H 0.060 0.940
44 H 0.360 0.640
45 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.174 21.920 -3.512 25.814
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.148 4.148
3 C -0.113 4.113
4 H 0.109 0.891
5 C -0.007 4.007
6 N -0.314 5.314
7 C 0.350 3.650
8 O -0.445 6.445
9 C -0.057 4.057
10 C -0.142 4.142
11 C -0.074 4.074
12 C -0.169 4.169
13 C 0.112 3.888
14 O -0.302 6.302
15 N -0.219 5.219
16 C -0.033 4.033
17 C -0.182 4.182
18 C 0.067 3.933
19 H 0.069 0.931
20 N -0.385 5.385
21 C -0.342 4.342
22 H 0.081 0.919
23 C -0.248 4.248
24 N -0.634 5.634
25 Si 0.766 3.234
26 H -0.204 1.204
27 H -0.226 1.226
28 H -0.192 1.192
29 H 0.083 0.917
30 H 0.071 0.929
31 H 0.081 0.919
32 H 0.065 0.935
33 H 0.084 0.916
34 H 0.115 0.885
35 H 0.067 0.933
36 H 0.176 0.824
37 H 0.209 0.791
38 H 0.198 0.802
39 H 0.283 0.717
40 H 0.170 0.830
41 H 0.055 0.945
42 H 0.090 0.910
43 H 0.079 0.921
44 H 0.194 0.806
45 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -13.211 20.977 -3.033 24.975
hybrid contribution 0.154 -0.290 0.841 0.903
sum -13.057 20.687 -2.192 24.561
Atomic orbital electron populations
1.21795 0.94324 1.02142 1.02115 1.21409 0.96479 0.94784 1.02119
1.21689 0.95217 0.96910 0.97436 0.89135 1.21718 0.99372 0.81904
0.97746 1.48088 1.09505 1.06021 1.67787 1.18327 0.85951 0.83972
0.76771 1.90717 1.13870 1.85909 1.54041 1.20730 0.88748 0.94210
1.01975 1.22304 1.02498 0.91742 0.97633 1.22032 0.94030 0.98569
0.92748 1.22712 0.95412 0.99317 0.99429 1.19710 0.85840 0.88184
0.95017 1.84795 1.12894 1.95121 1.37356 1.66969 1.10939 1.30000
1.14015 1.22885 0.77525 1.06260 0.96639 1.22406 1.01002 0.97498
0.97341 1.20451 0.91291 0.91364 0.90150 0.93105 1.42795 1.18236
1.65834 1.11625 1.19018 0.93076 1.24482 0.97638 0.91896 1.25230
0.97449 1.01374 1.00720 1.69845 1.18352 1.43633 1.31592 0.85685
0.78212 0.78272 0.81207 1.20422 1.22567 1.19206 0.91728 0.92907
0.91947 0.93451 0.91568 0.88507 0.93314 0.82404 0.79083 0.80170
0.71676 0.82971 0.94479 0.90975 0.92141 0.80607 0.93601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.51 9.67 71.98 0.70 -2.81 16
2 C -0.11 -3.29 5.19 30.60 0.16 -3.13 16
3 C -0.09 -2.90 2.14 -10.72 -0.02 -2.93 16
4 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16
5 C 0.11 3.81 5.03 86.36 0.43 4.25 16
6 N -0.58 -19.58 2.97 -821.94 -2.44 -22.02 16
7 C 0.56 18.03 7.65 86.88 0.66 18.69 16
8 O -0.57 -19.71 15.79 -3.78 -0.06 -19.77 16
9 C 0.08 2.08 6.58 41.85 0.28 2.35 16
10 C -0.12 -2.20 9.62 22.61 0.22 -1.98 16
11 C -0.05 -0.51 10.16 22.42 0.23 -0.29 16
12 C -0.15 -1.76 10.04 22.54 0.23 -1.53 16
13 C 0.29 5.83 7.74 84.92 0.66 6.49 16
14 O -0.49 -9.05 13.56 -89.86 -1.22 -10.27 16
15 N -0.50 -13.11 6.15 -298.20 -1.83 -14.94 16
16 C 0.09 3.08 5.63 86.36 0.49 3.56 16
17 C -0.14 -4.86 5.78 30.67 0.18 -4.68 16
18 C 0.18 6.58 2.53 45.02 0.11 6.69 16
19 H 0.05 1.98 8.08 -2.38 -0.02 1.97 16
20 N -0.74 -34.11 3.52 -322.83 -1.14 -35.25 16
21 C -0.21 -11.82 10.41 84.03 0.87 -10.94 16
22 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16
23 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16
24 N -0.98 -63.26 13.97 21.65 0.30 -62.95 16
25 Si 0.94 47.23 27.74 68.60 1.90 49.13 16
26 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16
27 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16
28 H -0.27 -12.72 6.52 99.48 0.65 -12.08 16
29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
30 H 0.05 1.27 6.70 -2.38 -0.02 1.25 16
31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16
32 H 0.05 1.63 7.69 -2.39 -0.02 1.61 16
33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
34 H 0.10 3.07 5.72 -2.39 -0.01 3.06 16
35 H 0.05 1.79 6.65 -2.38 -0.02 1.77 16
36 H 0.16 2.63 7.66 -2.91 -0.02 2.61 16
37 H 0.19 0.35 8.06 -2.91 -0.02 0.33 16
38 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16
39 H 0.42 3.62 9.06 -74.06 -0.67 2.95 16
40 H 0.15 4.83 4.01 -67.59 -0.27 4.56 16
41 H 0.04 1.55 7.74 -2.39 -0.02 1.53 16
42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16
44 H 0.36 16.68 3.81 -92.70 -0.35 16.33 16
45 H 0.25 15.80 8.31 -92.70 -0.77 15.03 16
Total: -1.00 -76.49 356.55 0.85 -75.63
By element:
Atomic # 1 Polarization: 29.89 SS G_CDS: -0.31 Total: 29.58 kcal
Atomic # 6 Polarization: 5.21 SS G_CDS: 5.65 Total: 10.87 kcal
Atomic # 7 Polarization: -130.06 SS G_CDS: -5.11 Total: -135.17 kcal
Atomic # 8 Polarization: -28.76 SS G_CDS: -1.28 Total: -30.04 kcal
Atomic # 14 Polarization: 47.23 SS G_CDS: 1.90 Total: 49.13 kcal
Total: -76.49 0.85 -75.63 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037819090.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.593 kcal
(2) G-P(sol) polarization free energy of solvation -76.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.855 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.038 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds