Wall clock time and date at job start Tue Mar 31 2020 13:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.46850 * 2 1
4 4 H 1.08993 * 109.49935 * 305.06266 * 3 2 1
5 5 C 1.53188 * 109.52353 * 65.14971 * 3 2 1
6 6 N 1.46932 * 108.77494 * 174.60415 * 5 3 2
7 7 C 1.34766 * 120.63320 * 126.43476 * 6 5 3
8 8 O 1.21519 * 120.00207 * 354.17567 * 7 6 5
9 9 C 1.48166 * 120.00369 * 174.18013 * 7 6 5
10 10 C 1.39965 * 120.88684 * 320.03827 * 9 7 6
11 11 C 1.37982 * 119.13183 * 179.70476 * 10 9 7
12 12 N 1.31905 * 120.97659 * 0.57532 * 11 10 9
13 13 C 1.32178 * 121.97254 * 359.71503 * 12 11 10
14 14 O 1.35684 * 119.62420 * 180.02562 * 13 12 11
15 15 C 1.38895 * 120.75201 * 359.97438 * 13 12 11
16 16 C 1.46934 * 118.76151 * 306.40288 * 6 5 3
17 17 C 1.53192 * 108.77126 * 53.55904 * 16 6 5
18 18 C 1.53041 * 109.49349 * 184.99840 * 3 2 1
19 19 H 1.08999 * 109.45316 * 298.66649 * 18 3 2
20 20 N 1.46502 * 109.46022 * 58.63198 * 18 3 2
21 21 C 1.36932 * 120.00098 * 205.06156 * 20 18 3
22 22 H 1.08008 * 120.00170 * 0.02562 * 21 20 18
23 23 C 1.38810 * 120.00367 * 179.97438 * 21 20 18
24 24 N 1.31623 * 119.99700 * 0.02562 * 23 21 20
25 25 Si 1.86799 * 120.00422 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47001 * 0.02562 * 25 23 21
27 27 H 1.48499 * 109.47103 * 120.00448 * 25 23 21
28 28 H 1.48500 * 109.47308 * 240.00795 * 25 23 21
29 29 H 1.08999 * 109.46769 * 59.99721 * 1 2 3
30 30 H 1.09002 * 109.46773 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47273 * 300.00038 * 1 2 3
32 32 H 1.08998 * 109.47273 * 239.99962 * 2 1 3
33 33 H 1.09003 * 109.47227 * 119.99694 * 2 1 3
34 34 H 1.09007 * 109.58657 * 294.38555 * 5 3 2
35 35 H 1.09003 * 109.59022 * 54.81093 * 5 3 2
36 36 H 1.08000 * 120.43992 * 359.97438 * 10 9 7
37 37 H 1.08005 * 119.50964 * 180.26894 * 11 10 9
38 38 H 0.96701 * 114.00144 * 269.97752 * 14 13 12
39 39 H 1.07998 * 120.52566 * 179.97438 * 15 13 12
40 40 H 1.08997 * 109.56728 * 293.79049 * 16 6 5
41 41 H 1.08994 * 109.61445 * 173.35992 * 16 6 5
42 42 H 1.08993 * 109.50428 * 185.44348 * 17 16 6
43 43 H 1.09000 * 109.49827 * 65.37785 * 17 16 6
44 44 H 0.97001 * 119.99857 * 25.06906 * 20 18 3
45 45 H 0.97003 * 119.99601 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6048 1.9823 -0.8410
5 6 1.6385 2.1275 1.3101
6 7 2.2450 3.4652 1.3495
7 6 1.4857 4.5572 1.5669
8 8 0.2764 4.4543 1.6270
9 6 2.1254 5.8834 1.7324
10 6 3.3120 6.0228 2.4615
11 6 3.8798 7.2740 2.5876
12 7 3.3150 8.3340 2.0422
13 6 2.1918 8.2506 1.3504
14 8 1.6525 9.3719 0.8095
15 6 1.5580 7.0279 1.1701
16 6 3.6951 3.5903 1.1483
17 6 4.0736 2.8882 -0.1596
18 6 3.5652 1.4450 -0.1257
19 1 4.0007 0.9266 0.7285
20 7 3.9542 0.7614 -1.3616
21 6 5.1918 0.1845 -1.4646
22 1 5.8811 0.2332 -0.6345
23 6 5.5602 -0.4637 -2.6354
24 7 4.7201 -0.5235 -3.6469
25 14 7.2483 -1.2513 -2.7757
26 1 7.9968 -1.0463 -1.5096
27 1 7.0961 -2.7063 -3.0302
28 1 7.9938 -0.6276 -3.8984
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 0.5532 2.2168 1.3581
35 1 1.9965 1.5389 2.1549
36 1 3.7794 5.1617 2.9158
37 1 4.7978 7.3879 3.1452
38 1 1.0307 9.8297 1.3917
39 1 0.6402 6.9640 0.6045
40 1 4.2208 3.1215 1.9801
41 1 3.9667 4.6442 1.0891
42 1 5.1577 2.8894 -0.2727
43 1 3.6196 3.4142 -0.9994
44 1 3.3351 0.7174 -2.1071
45 1 4.9774 -0.9768 -4.4650
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037828661.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:30:31
Heat of formation + Delta-G solvation = -24.583416 kcal
Electronic energy + Delta-G solvation = -27233.966360 eV
Core-core repulsion = 23445.128802 eV
Total energy + Delta-G solvation = -3788.837559 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.17548 -39.86568 -37.93322 -37.29072 -34.94533 -33.90143 -32.87436 -31.79470
-30.69333 -29.58626 -28.77817 -25.93328 -24.28213 -24.05853 -23.56543 -22.67528
-20.93695 -20.49407 -19.58427 -18.56989 -17.58920 -17.15671 -16.72003 -16.48762
-16.04222 -15.59335 -15.10732 -14.92024 -14.57508 -14.11203 -13.99771 -13.77114
-13.43521 -13.36451 -13.27021 -13.12782 -12.83526 -12.42565 -12.17037 -12.12142
-11.87496 -11.63784 -11.36452 -10.99427 -10.90940 -10.78385 -10.50977 -10.34194
-10.25073 -10.19427 -10.13523 -9.80702 -9.66199 -9.61973 -9.28041 -8.94466
-8.63734 -7.01498 -5.82159 -3.11227 0.45647 0.63749 2.47590 2.82928
3.19549 3.38946 3.44489 3.46587 3.47062 4.10398 4.35053 4.53171
4.56705 4.65177 4.89355 5.00309 5.13455 5.14217 5.25979 5.30674
5.35624 5.41077 5.47658 5.55164 5.59176 5.61962 5.67696 5.80904
5.92677 6.03425 6.06123 6.08808 6.24528 6.28773 6.32028 6.39553
6.47305 6.60448 6.75884 6.89588 6.98620 7.11815 7.28633 7.52043
7.64394 7.95201 8.35758 9.47500 10.04276 10.39029 11.40214
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.014411 B = 0.003409 C = 0.002972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1942.546433 B = 8212.066693 C = 9419.714358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.111 4.111
3 C -0.105 4.105
4 H 0.070 0.930
5 C 0.119 3.881
6 N -0.594 5.594
7 C 0.557 3.443
8 O -0.534 6.534
9 C -0.060 4.060
10 C -0.154 4.154
11 C 0.122 3.878
12 N -0.492 5.492
13 C 0.310 3.690
14 O -0.479 6.479
15 C -0.135 4.135
16 C 0.095 3.905
17 C -0.152 4.152
18 C 0.184 3.816
19 H 0.049 0.951
20 N -0.720 5.720
21 C -0.239 4.239
22 H 0.070 0.930
23 C -0.012 4.012
24 N -0.931 5.931
25 Si 0.904 3.096
26 H -0.281 1.281
27 H -0.292 1.292
28 H -0.292 1.292
29 H 0.051 0.949
30 H 0.050 0.950
31 H 0.048 0.952
32 H 0.084 0.916
33 H 0.057 0.943
34 H 0.093 0.907
35 H 0.070 0.930
36 H 0.150 0.850
37 H 0.169 0.831
38 H 0.402 0.598
39 H 0.149 0.851
40 H 0.072 0.928
41 H 0.084 0.916
42 H 0.078 0.922
43 H 0.060 0.940
44 H 0.384 0.616
45 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.920 12.900 14.403 20.221
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.150 4.150
3 C -0.125 4.125
4 H 0.089 0.911
5 C -0.003 4.003
6 N -0.325 5.325
7 C 0.344 3.656
8 O -0.412 6.412
9 C -0.071 4.071
10 C -0.175 4.175
11 C -0.035 4.035
12 N -0.212 5.212
13 C 0.130 3.870
14 O -0.286 6.286
15 C -0.157 4.157
16 C -0.028 4.028
17 C -0.194 4.194
18 C 0.073 3.927
19 H 0.067 0.933
20 N -0.360 5.360
21 C -0.370 4.370
22 H 0.088 0.912
23 C -0.208 4.208
24 N -0.579 5.579
25 Si 0.736 3.264
26 H -0.206 1.206
27 H -0.219 1.219
28 H -0.219 1.219
29 H 0.070 0.930
30 H 0.069 0.931
31 H 0.068 0.932
32 H 0.103 0.897
33 H 0.076 0.924
34 H 0.111 0.889
35 H 0.088 0.912
36 H 0.168 0.832
37 H 0.186 0.814
38 H 0.260 0.740
39 H 0.167 0.833
40 H 0.090 0.910
41 H 0.102 0.898
42 H 0.097 0.903
43 H 0.078 0.922
44 H 0.218 0.782
45 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -5.703 13.421 14.022 20.231
hybrid contribution 0.240 -1.019 -0.287 1.086
sum -5.463 12.402 13.735 19.295
Atomic orbital electron populations
1.21848 0.96769 1.01097 1.01314 1.21452 0.94400 0.95546 1.03562
1.21791 0.97745 0.96376 0.96590 0.91108 1.21848 0.99545 0.80730
0.98202 1.48072 1.08839 1.06578 1.69051 1.18171 0.86519 0.83582
0.77309 1.90782 1.13391 1.85771 1.51261 1.20262 0.94997 0.94141
0.97716 1.22502 0.95083 1.00067 0.99798 1.22522 0.98917 0.86538
0.95480 1.67041 1.10594 1.34981 1.08546 1.19005 0.89746 0.86199
0.92006 1.84811 1.62646 1.38594 1.42529 1.22189 1.01351 0.91378
1.00786 1.22263 0.79069 1.01775 0.99646 1.22710 1.02399 0.99303
0.94948 1.20189 0.90716 0.90458 0.91336 0.93325 1.42413 1.16547
1.64359 1.12690 1.19246 0.91801 1.27352 0.98648 0.91166 1.24733
0.98140 1.01483 0.96425 1.69671 1.35176 1.48256 1.04768 0.86160
0.83978 0.78910 0.77374 1.20579 1.21906 1.21920 0.92951 0.93110
0.93249 0.89693 0.92400 0.88918 0.91190 0.83236 0.81440 0.74043
0.83280 0.90968 0.89812 0.90334 0.92156 0.78174 0.93536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16
2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16
3 C -0.10 -1.64 1.92 -90.50 -0.17 -1.82 16
4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
5 C 0.12 1.61 5.34 -3.71 -0.02 1.59 16
6 N -0.59 -7.81 2.97 -173.75 -0.52 -8.33 16
7 C 0.56 7.76 7.38 -12.19 -0.09 7.67 16
8 O -0.53 -8.97 16.37 5.35 0.09 -8.88 16
9 C -0.06 -0.70 5.15 -104.68 -0.54 -1.24 16
10 C -0.15 -1.40 7.49 -39.03 -0.29 -1.69 16
11 C 0.12 1.07 11.17 -17.61 -0.20 0.87 16
12 N -0.49 -5.49 10.36 -13.38 -0.14 -5.63 16
13 C 0.31 3.41 7.74 -17.16 -0.13 3.28 16
14 O -0.48 -4.55 13.56 -18.75 -0.25 -4.80 16
15 C -0.14 -1.54 9.70 -38.84 -0.38 -1.91 16
16 C 0.10 1.14 4.93 -3.71 -0.02 1.12 16
17 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16
18 C 0.18 3.29 2.19 -67.88 -0.15 3.14 16
19 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16
20 N -0.72 -16.69 4.33 -53.38 -0.23 -16.92 16
21 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16
22 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16
23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16
24 N -0.93 -27.20 13.06 55.49 0.72 -26.48 16
25 Si 0.90 21.66 29.55 -169.99 -5.02 16.64 16
26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
31 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16
32 H 0.08 1.59 7.22 -51.93 -0.37 1.22 16
33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
34 H 0.09 1.31 5.72 -51.92 -0.30 1.02 16
35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
36 H 0.15 1.06 6.64 -52.49 -0.35 0.71 16
37 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16
38 H 0.40 1.67 9.06 45.56 0.41 2.08 16
39 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16
40 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16
41 H 0.08 0.89 4.73 -51.93 -0.25 0.65 16
42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16
43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
44 H 0.38 9.71 7.51 -40.82 -0.31 9.41 16
45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16
LS Contribution 363.64 15.07 5.48 5.48
Total: -1.00 -32.74 363.64 -7.74 -40.48
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: -5.70 Total: 10.36 kcal
Atomic # 6 Polarization: 0.25 SS G_CDS: -2.17 Total: -1.91 kcal
Atomic # 7 Polarization: -57.21 SS G_CDS: -0.16 Total: -57.37 kcal
Atomic # 8 Polarization: -13.51 SS G_CDS: -0.17 Total: -13.68 kcal
Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -32.74 -7.74 -40.48 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037828661.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.896 kcal
(2) G-P(sol) polarization free energy of solvation -32.741 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.480 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.583 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds