Wall clock time and date at job start Tue Mar 31 2020 13:30:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53003 * 109.46850 * 2 1
4 4 H 1.08993 * 109.49935 * 305.06266 * 3 2 1
5 5 C 1.53188 * 109.52353 * 65.14971 * 3 2 1
6 6 N 1.46932 * 108.77494 * 174.60415 * 5 3 2
7 7 C 1.34766 * 120.63320 * 126.43476 * 6 5 3
8 8 O 1.21519 * 120.00207 * 354.17567 * 7 6 5
9 9 C 1.48166 * 120.00369 * 174.18013 * 7 6 5
10 10 C 1.39965 * 120.88684 * 320.03827 * 9 7 6
11 11 C 1.37982 * 119.13183 * 179.70476 * 10 9 7
12 12 N 1.31905 * 120.97659 * 0.57532 * 11 10 9
13 13 C 1.32178 * 121.97254 * 359.71503 * 12 11 10
14 14 O 1.35684 * 119.62420 * 180.02562 * 13 12 11
15 15 C 1.38895 * 120.75201 * 359.97438 * 13 12 11
16 16 C 1.46934 * 118.76151 * 306.40288 * 6 5 3
17 17 C 1.53192 * 108.77126 * 53.55904 * 16 6 5
18 18 C 1.53041 * 109.49349 * 184.99840 * 3 2 1
19 19 H 1.08999 * 109.45316 * 298.66649 * 18 3 2
20 20 N 1.46502 * 109.46022 * 58.63198 * 18 3 2
21 21 C 1.36932 * 120.00098 * 205.06156 * 20 18 3
22 22 H 1.08008 * 120.00170 * 0.02562 * 21 20 18
23 23 C 1.38810 * 120.00367 * 179.97438 * 21 20 18
24 24 N 1.31623 * 119.99700 * 0.02562 * 23 21 20
25 25 Si 1.86799 * 120.00422 * 180.02562 * 23 21 20
26 26 H 1.48498 * 109.47001 * 0.02562 * 25 23 21
27 27 H 1.48499 * 109.47103 * 120.00448 * 25 23 21
28 28 H 1.48500 * 109.47308 * 240.00795 * 25 23 21
29 29 H 1.08999 * 109.46769 * 59.99721 * 1 2 3
30 30 H 1.09002 * 109.46773 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.47273 * 300.00038 * 1 2 3
32 32 H 1.08998 * 109.47273 * 239.99962 * 2 1 3
33 33 H 1.09003 * 109.47227 * 119.99694 * 2 1 3
34 34 H 1.09007 * 109.58657 * 294.38555 * 5 3 2
35 35 H 1.09003 * 109.59022 * 54.81093 * 5 3 2
36 36 H 1.08000 * 120.43992 * 359.97438 * 10 9 7
37 37 H 1.08005 * 119.50964 * 180.26894 * 11 10 9
38 38 H 0.96701 * 114.00144 * 269.97752 * 14 13 12
39 39 H 1.07998 * 120.52566 * 179.97438 * 15 13 12
40 40 H 1.08997 * 109.56728 * 293.79049 * 16 6 5
41 41 H 1.08994 * 109.61445 * 173.35992 * 16 6 5
42 42 H 1.08993 * 109.50428 * 185.44348 * 17 16 6
43 43 H 1.09000 * 109.49827 * 65.37785 * 17 16 6
44 44 H 0.97001 * 119.99857 * 25.06906 * 20 18 3
45 45 H 0.97003 * 119.99601 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.6048 1.9823 -0.8410
5 6 1.6385 2.1275 1.3101
6 7 2.2450 3.4652 1.3495
7 6 1.4857 4.5572 1.5669
8 8 0.2764 4.4543 1.6270
9 6 2.1254 5.8834 1.7324
10 6 3.3120 6.0228 2.4615
11 6 3.8798 7.2740 2.5876
12 7 3.3150 8.3340 2.0422
13 6 2.1918 8.2506 1.3504
14 8 1.6525 9.3719 0.8095
15 6 1.5580 7.0279 1.1701
16 6 3.6951 3.5903 1.1483
17 6 4.0736 2.8882 -0.1596
18 6 3.5652 1.4450 -0.1257
19 1 4.0007 0.9266 0.7285
20 7 3.9542 0.7614 -1.3616
21 6 5.1918 0.1845 -1.4646
22 1 5.8811 0.2332 -0.6345
23 6 5.5602 -0.4637 -2.6354
24 7 4.7201 -0.5235 -3.6469
25 14 7.2483 -1.2513 -2.7757
26 1 7.9968 -1.0463 -1.5096
27 1 7.0961 -2.7063 -3.0302
28 1 7.9938 -0.6276 -3.8984
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8934 -0.5138 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 0.5532 2.2168 1.3581
35 1 1.9965 1.5389 2.1549
36 1 3.7794 5.1617 2.9158
37 1 4.7978 7.3879 3.1452
38 1 1.0307 9.8297 1.3917
39 1 0.6402 6.9640 0.6045
40 1 4.2208 3.1215 1.9801
41 1 3.9667 4.6442 1.0891
42 1 5.1577 2.8894 -0.2727
43 1 3.6196 3.4142 -0.9994
44 1 3.3351 0.7174 -2.1071
45 1 4.9774 -0.9768 -4.4650
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037828661.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:30:31
Heat of formation + Delta-G solvation = -49.569737 kcal
Electronic energy + Delta-G solvation = -27235.049849 eV
Core-core repulsion = 23445.128802 eV
Total energy + Delta-G solvation = -3789.921047 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.07993 -40.85577 -39.18443 -38.05140 -36.29877 -35.40231 -33.75378 -33.45895
-31.46129 -31.11407 -30.01560 -27.21932 -25.67102 -25.15148 -24.47213 -24.01021
-22.25240 -21.54275 -20.81322 -19.51694 -19.04259 -18.45889 -17.60036 -17.44281
-17.01265 -16.73682 -16.40120 -16.10886 -15.60301 -15.58560 -15.31433 -15.00696
-14.75986 -14.50663 -14.44181 -14.22826 -14.00439 -13.61391 -13.30890 -13.07611
-13.04281 -12.87561 -12.79330 -12.59187 -12.54214 -12.15726 -12.05435 -11.84391
-11.60899 -11.54046 -11.42051 -11.10784 -11.03433 -10.84455 -10.47456 -9.99713
-9.77419 -8.95084 -7.90123 -5.17633 -0.36704 -0.09885 1.46379 1.49424
1.49974 1.59250 1.82462 2.47870 2.58851 2.70926 3.15719 3.43800
3.67275 3.73340 3.78561 3.85434 3.89400 3.97207 4.06018 4.18810
4.31530 4.33179 4.40445 4.46102 4.57775 4.63193 4.67230 4.72716
4.78661 4.80069 4.88069 4.90751 5.00568 5.03809 5.15737 5.27981
5.35094 5.40714 5.45733 5.52512 5.58915 5.64032 6.21819 6.31314
6.54501 6.82074 6.88689 7.37812 8.14015 8.36596 9.33721
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.014411 B = 0.003409 C = 0.002972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1942.546433 B = 8212.066693 C = 9419.714358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.106 4.106
3 C -0.094 4.094
4 H 0.047 0.953
5 C 0.125 3.875
6 N -0.593 5.593
7 C 0.558 3.442
8 O -0.569 6.569
9 C -0.075 4.075
10 C -0.144 4.144
11 C 0.129 3.871
12 N -0.511 5.511
13 C 0.306 3.694
14 O -0.490 6.490
15 C -0.149 4.149
16 C 0.104 3.896
17 C -0.145 4.145
18 C 0.179 3.821
19 H 0.056 0.944
20 N -0.732 5.732
21 C -0.227 4.227
22 H 0.081 0.919
23 C -0.078 4.078
24 N -0.972 5.972
25 Si 0.966 3.034
26 H -0.261 1.261
27 H -0.299 1.299
28 H -0.300 1.300
29 H 0.042 0.958
30 H 0.060 0.940
31 H 0.066 0.934
32 H 0.045 0.955
33 H 0.069 0.931
34 H 0.088 0.912
35 H 0.095 0.905
36 H 0.177 0.823
37 H 0.206 0.794
38 H 0.422 0.578
39 H 0.142 0.858
40 H 0.106 0.894
41 H 0.103 0.897
42 H 0.071 0.929
43 H 0.036 0.964
44 H 0.369 0.631
45 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.556 13.744 17.383 22.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.145 4.145
3 C -0.114 4.114
4 H 0.065 0.935
5 C 0.003 3.997
6 N -0.324 5.324
7 C 0.346 3.654
8 O -0.449 6.449
9 C -0.086 4.086
10 C -0.164 4.164
11 C -0.028 4.028
12 N -0.231 5.231
13 C 0.127 3.873
14 O -0.301 6.301
15 C -0.171 4.171
16 C -0.018 4.018
17 C -0.186 4.186
18 C 0.070 3.930
19 H 0.074 0.926
20 N -0.371 5.371
21 C -0.359 4.359
22 H 0.099 0.901
23 C -0.270 4.270
24 N -0.623 5.623
25 Si 0.796 3.204
26 H -0.185 1.185
27 H -0.227 1.227
28 H -0.228 1.228
29 H 0.061 0.939
30 H 0.079 0.921
31 H 0.084 0.916
32 H 0.064 0.936
33 H 0.088 0.912
34 H 0.107 0.893
35 H 0.113 0.887
36 H 0.194 0.806
37 H 0.223 0.777
38 H 0.283 0.717
39 H 0.160 0.840
40 H 0.124 0.876
41 H 0.121 0.879
42 H 0.090 0.910
43 H 0.055 0.945
44 H 0.201 0.799
45 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -4.338 14.308 17.068 22.690
hybrid contribution -0.224 -1.212 -1.159 1.691
sum -4.562 13.096 15.909 21.105
Atomic orbital electron populations
1.21786 0.95026 1.01904 1.01657 1.21353 0.95928 0.95055 1.02126
1.21641 0.95988 0.96554 0.97256 0.93494 1.21765 0.99512 0.81124
0.97321 1.48108 1.09303 1.06298 1.68664 1.18506 0.86118 0.84346
0.76430 1.90761 1.14979 1.86333 1.52867 1.20184 0.96320 0.92783
0.99282 1.22767 0.93755 1.01264 0.98638 1.23177 0.99497 0.85714
0.94378 1.67138 1.10704 1.36181 1.09089 1.19041 0.89918 0.86327
0.91989 1.84754 1.63305 1.38372 1.43625 1.22182 1.01533 0.91856
1.01534 1.22320 0.78462 1.02780 0.98237 1.22512 1.01557 0.97829
0.96680 1.20447 0.92242 0.91128 0.89169 0.92605 1.42620 1.15546
1.64910 1.13986 1.19654 0.92550 1.25331 0.98324 0.90081 1.25485
1.01501 1.03351 0.96641 1.69834 1.37066 1.50206 1.05242 0.85167
0.80309 0.77270 0.77612 1.18548 1.22677 1.22752 0.93922 0.92100
0.91552 0.93599 0.91206 0.89349 0.88722 0.80559 0.77736 0.71654
0.84031 0.87642 0.87895 0.91048 0.94494 0.79947 0.94398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.82 9.67 71.98 0.70 -3.13 16
2 C -0.11 -3.28 5.31 30.60 0.16 -3.12 16
3 C -0.09 -2.92 1.92 -10.72 -0.02 -2.94 16
4 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16
5 C 0.12 3.14 5.34 86.36 0.46 3.60 16
6 N -0.59 -14.26 2.97 -821.93 -2.44 -16.70 16
7 C 0.56 14.70 7.38 86.88 0.64 15.34 16
8 O -0.57 -18.83 16.37 -3.78 -0.06 -18.90 16
9 C -0.07 -1.60 5.15 -19.90 -0.10 -1.70 16
10 C -0.14 -2.09 7.49 22.63 0.17 -1.92 16
11 C 0.13 1.78 11.17 84.62 0.94 2.72 16
12 N -0.51 -10.19 10.36 -309.13 -3.20 -13.39 16
13 C 0.31 6.37 7.74 84.80 0.66 7.02 16
14 O -0.49 -8.88 13.56 -90.02 -1.22 -10.10 16
15 C -0.15 -3.29 9.70 22.75 0.22 -3.07 16
16 C 0.10 2.15 4.93 86.36 0.43 2.58 16
17 C -0.14 -4.42 5.66 30.67 0.17 -4.25 16
18 C 0.18 6.25 2.19 45.02 0.10 6.35 16
19 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16
20 N -0.73 -34.46 4.33 -322.80 -1.40 -35.86 16
21 C -0.23 -11.77 9.93 84.03 0.83 -10.94 16
22 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16
23 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16
24 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16
25 Si 0.97 44.84 29.55 68.60 2.03 46.87 16
26 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16
27 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16
28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16
29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.07 1.51 6.70 -2.39 -0.02 1.50 16
32 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16
33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
34 H 0.09 2.37 5.72 -2.38 -0.01 2.36 16
35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16
36 H 0.18 1.56 6.64 -2.91 -0.02 1.54 16
37 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16
38 H 0.42 3.12 9.06 -74.06 -0.67 2.44 16
39 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16
40 H 0.11 1.60 8.13 -2.39 -0.02 1.58 16
41 H 0.10 1.81 4.73 -2.39 -0.01 1.80 16
42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16
43 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
44 H 0.37 19.47 7.51 -92.71 -0.70 18.77 16
45 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16
Total: -1.00 -73.06 363.64 -0.53 -73.58
By element:
Atomic # 1 Polarization: 30.50 SS G_CDS: -0.34 Total: 30.17 kcal
Atomic # 6 Polarization: -3.14 SS G_CDS: 5.83 Total: 2.69 kcal
Atomic # 7 Polarization: -117.55 SS G_CDS: -6.76 Total: -124.31 kcal
Atomic # 8 Polarization: -27.72 SS G_CDS: -1.28 Total: -29.00 kcal
Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal
Total: -73.06 -0.53 -73.58 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037828661.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.012 kcal
(2) G-P(sol) polarization free energy of solvation -73.056 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.582 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds