Wall clock time and date at job start Tue Mar 31 2020 13:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 H 1.09001 * 109.49670 * 55.06654 * 3 2 1 5 5 C 1.53188 * 109.49658 * 295.00094 * 3 2 1 6 6 N 1.46932 * 108.77707 * 185.38234 * 5 3 2 7 7 C 1.34769 * 120.63069 * 233.58562 * 6 5 3 8 8 O 1.21510 * 120.00508 * 5.82930 * 7 6 5 9 9 C 1.48162 * 119.99809 * 185.82441 * 7 6 5 10 10 C 1.39960 * 120.89144 * 40.50307 * 9 7 6 11 11 C 1.37982 * 119.13501 * 180.02562 * 10 9 7 12 12 N 1.31914 * 120.97531 * 359.97438 * 11 10 9 13 13 C 1.32166 * 121.97378 * 0.02562 * 12 11 10 14 14 O 1.35687 * 119.62690 * 179.97438 * 13 12 11 15 15 C 1.38899 * 120.75259 * 359.97438 * 13 12 11 16 16 C 1.46931 * 118.73571 * 53.85907 * 6 5 3 17 17 C 1.53623 * 108.54359 * 306.09396 * 16 6 5 18 18 C 1.53035 * 109.52152 * 175.14456 * 3 2 1 19 19 H 1.09001 * 109.46280 * 61.31364 * 18 3 2 20 20 N 1.46499 * 109.46491 * 301.33968 * 18 3 2 21 21 C 1.36934 * 120.00184 * 155.00311 * 20 18 3 22 22 H 1.07998 * 119.99916 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99695 * 180.02562 * 21 20 18 24 24 N 1.31612 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99521 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47092 * 89.99857 * 25 23 21 27 27 H 1.48501 * 109.46739 * 209.99380 * 25 23 21 28 28 H 1.48497 * 109.47435 * 329.99554 * 25 23 21 29 29 H 1.08996 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46619 * 300.00289 * 1 2 3 31 31 H 1.09002 * 109.47062 * 59.99895 * 1 2 3 32 32 H 1.09000 * 109.46619 * 239.99710 * 2 1 3 33 33 H 1.08998 * 109.46587 * 120.00173 * 2 1 3 34 34 H 1.08999 * 109.58797 * 65.59368 * 5 3 2 35 35 H 1.09001 * 109.58653 * 305.16622 * 5 3 2 36 36 H 1.07998 * 120.43705 * 0.02562 * 10 9 7 37 37 H 1.08004 * 119.51402 * 180.02562 * 11 10 9 38 38 H 0.96700 * 113.99341 * 89.99933 * 14 13 12 39 39 H 1.07997 * 120.52676 * 180.02562 * 15 13 12 40 40 H 1.08995 * 109.58717 * 65.92650 * 16 6 5 41 41 H 1.08997 * 109.58372 * 186.35765 * 16 6 5 42 42 H 1.08996 * 109.63612 * 294.87443 * 17 16 6 43 43 H 1.09000 * 109.43699 * 174.72368 * 17 16 6 44 44 H 0.97001 * 119.99492 * 334.99711 * 20 18 3 45 45 H 0.97005 * 119.99983 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9816 0.8424 5 6 1.6352 2.1279 -1.3087 6 7 2.2410 3.4659 -1.3490 7 6 1.4807 4.5578 -1.5635 8 8 0.2714 4.4546 -1.6201 9 6 2.1196 5.8842 -1.7300 10 6 3.2979 6.0262 -2.4719 11 6 3.8622 7.2785 -2.6032 12 7 3.3074 8.3355 -2.0419 13 6 2.1953 8.2487 -1.3329 14 8 1.6659 9.3670 -0.7760 15 6 1.5624 7.0257 -1.1513 16 6 3.6925 3.5902 -1.1571 17 6 4.0735 2.8889 0.1555 18 6 3.5656 1.4455 0.1221 19 1 3.9994 0.9276 -0.7333 20 7 3.9579 0.7616 1.3569 21 6 5.1965 0.1864 1.4571 22 1 5.8840 0.2365 0.6258 23 6 5.5679 -0.4621 2.6270 24 7 4.7297 -0.5235 3.6399 25 14 7.2573 -1.2474 2.7635 26 1 8.2225 -0.2550 3.3007 27 1 7.1877 -2.4154 3.6779 28 1 7.7046 -1.6961 1.4205 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5497 2.2168 -1.3541 35 1 1.9914 1.5400 -2.1546 36 1 3.7594 5.1669 -2.9355 37 1 4.7712 7.3952 -3.1746 38 1 1.0357 9.8293 -1.3454 39 1 0.6537 6.9590 -0.5716 40 1 4.2129 3.1190 -1.9908 41 1 3.9648 4.6441 -1.1023 42 1 3.6209 3.4143 0.9963 43 1 5.1579 2.8904 0.2660 44 1 3.3402 0.7164 2.1034 45 1 4.9894 -0.9763 4.4575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037828662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:35 Heat of formation + Delta-G solvation = -24.643985 kcal Electronic energy + Delta-G solvation = -27233.438877 eV Core-core repulsion = 23444.598692 eV Total energy + Delta-G solvation = -3788.840185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17254 -39.86231 -37.92816 -37.28924 -34.93973 -33.89804 -32.87387 -31.78583 -30.69166 -29.56632 -28.77652 -25.93162 -24.28094 -24.05548 -23.56990 -22.67776 -20.92915 -20.49310 -19.58237 -18.56819 -17.58866 -17.15532 -16.72384 -16.48972 -16.04284 -15.59314 -15.10505 -14.91400 -14.57237 -14.10813 -13.99513 -13.77195 -13.43303 -13.36258 -13.26446 -13.12383 -12.83053 -12.42626 -12.16814 -12.12080 -11.87634 -11.63297 -11.36450 -10.98571 -10.90997 -10.77792 -10.50963 -10.34027 -10.26329 -10.21094 -10.13548 -9.80528 -9.66128 -9.61973 -9.28095 -8.93858 -8.63418 -7.01433 -5.81839 -3.10935 0.45939 0.63712 2.47500 2.83043 3.19535 3.39277 3.44576 3.46441 3.46522 4.10508 4.35121 4.53357 4.56712 4.65141 4.89494 5.00468 5.13674 5.14376 5.25801 5.30623 5.35621 5.41067 5.47366 5.55220 5.59229 5.61798 5.67732 5.80977 5.92854 6.03458 6.06163 6.08921 6.24378 6.28890 6.32186 6.39648 6.47537 6.60641 6.75999 6.89645 6.98814 7.11853 7.28749 7.52062 7.64114 7.95264 8.36065 9.47738 10.04539 10.39312 11.40482 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003412 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.823897 B = 8204.914151 C = 9410.774377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.557 3.443 8 O -0.534 6.534 9 C -0.060 4.060 10 C -0.154 4.154 11 C 0.122 3.878 12 N -0.492 5.492 13 C 0.310 3.690 14 O -0.479 6.479 15 C -0.135 4.135 16 C 0.095 3.905 17 C -0.152 4.152 18 C 0.183 3.817 19 H 0.049 0.951 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.402 0.598 39 H 0.149 0.851 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 12.877 -14.352 20.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.326 5.326 7 C 0.344 3.656 8 O -0.412 6.412 9 C -0.071 4.071 10 C -0.174 4.174 11 C -0.034 4.034 12 N -0.212 5.212 13 C 0.131 3.869 14 O -0.286 6.286 15 C -0.157 4.157 16 C -0.028 4.028 17 C -0.193 4.193 18 C 0.073 3.927 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.167 0.833 37 H 0.186 0.814 38 H 0.260 0.740 39 H 0.167 0.833 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.769 13.383 -13.969 20.187 hybrid contribution 0.249 -1.003 0.281 1.071 sum -5.521 12.380 -13.688 19.264 Atomic orbital electron populations 1.21849 0.96770 1.01098 1.01315 1.21450 0.94395 0.95553 1.03559 1.21788 0.97730 0.96363 0.96604 0.91108 1.21847 0.99547 0.80724 0.98211 1.48076 1.08752 1.06573 1.69151 1.18168 0.86525 0.83589 0.77298 1.90780 1.13394 1.85776 1.51248 1.20263 0.95017 0.94160 0.97654 1.22492 0.95117 1.00034 0.99806 1.22523 0.98859 0.86560 0.95505 1.67039 1.10755 1.35053 1.08325 1.19003 0.89866 0.86246 0.91821 1.84812 1.62303 1.38712 1.42753 1.22191 1.01340 0.91425 1.00770 1.22350 0.79006 1.01771 0.99658 1.22788 1.02359 0.99283 0.94867 1.20190 0.90697 0.90462 0.91357 0.93335 1.42405 1.16483 1.64421 1.12691 1.19200 0.91779 1.27493 0.98662 0.91222 1.24728 0.98117 1.01459 0.96425 1.69655 1.35219 1.48284 1.04730 0.86232 0.84121 0.78761 0.77304 1.21767 1.21819 1.20775 0.93110 0.92958 0.93241 0.92398 0.89705 0.88916 0.91199 0.83259 0.81442 0.74041 0.83289 0.90939 0.89828 0.92129 0.90374 0.78174 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.16 0.36 -1.68 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.10 -1.64 1.92 -90.51 -0.17 -1.81 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.61 5.33 -3.71 -0.02 1.59 16 6 N -0.59 -7.82 2.97 -173.50 -0.51 -8.33 16 7 C 0.56 7.76 7.37 -12.19 -0.09 7.67 16 8 O -0.53 -8.97 16.38 5.36 0.09 -8.88 16 9 C -0.06 -0.70 5.13 -104.68 -0.54 -1.23 16 10 C -0.15 -1.40 7.49 -39.03 -0.29 -1.69 16 11 C 0.12 1.07 11.17 -17.61 -0.20 0.88 16 12 N -0.49 -5.50 10.36 -13.38 -0.14 -5.64 16 13 C 0.31 3.42 7.74 -17.16 -0.13 3.29 16 14 O -0.48 -4.55 13.56 -18.76 -0.25 -4.81 16 15 C -0.14 -1.54 9.70 -38.84 -0.38 -1.92 16 16 C 0.09 1.14 4.98 -3.48 -0.02 1.12 16 17 C -0.15 -2.42 5.67 -26.38 -0.15 -2.57 16 18 C 0.18 3.29 2.19 -67.89 -0.15 3.14 16 19 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 20 N -0.72 -16.70 4.33 -53.38 -0.23 -16.94 16 21 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -27.22 13.06 55.49 0.72 -26.49 16 25 Si 0.90 21.67 29.55 -169.99 -5.02 16.64 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.59 7.22 -51.93 -0.38 1.22 16 34 H 0.09 1.31 5.71 -51.93 -0.30 1.02 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.15 1.06 6.69 -52.49 -0.35 0.70 16 37 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.40 1.67 9.06 45.56 0.41 2.09 16 39 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.89 4.74 -51.93 -0.25 0.65 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.38 9.72 7.51 -40.82 -0.31 9.41 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 363.74 15.07 5.48 5.48 Total: -1.00 -32.73 363.74 -7.74 -40.47 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.70 Total: 10.41 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.16 Total: -1.91 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.16 Total: -57.40 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.17 Total: -13.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.73 -7.74 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037828662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.827 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds