Wall clock time and date at job start Tue Mar 31 2020 13:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 H 1.09001 * 109.49670 * 55.06654 * 3 2 1 5 5 C 1.53188 * 109.49658 * 295.00094 * 3 2 1 6 6 N 1.46932 * 108.77707 * 185.38234 * 5 3 2 7 7 C 1.34769 * 120.63069 * 233.58562 * 6 5 3 8 8 O 1.21510 * 120.00508 * 5.82930 * 7 6 5 9 9 C 1.48162 * 119.99809 * 185.82441 * 7 6 5 10 10 C 1.39960 * 120.89144 * 40.50307 * 9 7 6 11 11 C 1.37982 * 119.13501 * 180.02562 * 10 9 7 12 12 N 1.31914 * 120.97531 * 359.97438 * 11 10 9 13 13 C 1.32166 * 121.97378 * 0.02562 * 12 11 10 14 14 O 1.35687 * 119.62690 * 179.97438 * 13 12 11 15 15 C 1.38899 * 120.75259 * 359.97438 * 13 12 11 16 16 C 1.46931 * 118.73571 * 53.85907 * 6 5 3 17 17 C 1.53623 * 108.54359 * 306.09396 * 16 6 5 18 18 C 1.53035 * 109.52152 * 175.14456 * 3 2 1 19 19 H 1.09001 * 109.46280 * 61.31364 * 18 3 2 20 20 N 1.46499 * 109.46491 * 301.33968 * 18 3 2 21 21 C 1.36934 * 120.00184 * 155.00311 * 20 18 3 22 22 H 1.07998 * 119.99916 * 359.97438 * 21 20 18 23 23 C 1.38815 * 119.99695 * 180.02562 * 21 20 18 24 24 N 1.31612 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99521 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47092 * 89.99857 * 25 23 21 27 27 H 1.48501 * 109.46739 * 209.99380 * 25 23 21 28 28 H 1.48497 * 109.47435 * 329.99554 * 25 23 21 29 29 H 1.08996 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46619 * 300.00289 * 1 2 3 31 31 H 1.09002 * 109.47062 * 59.99895 * 1 2 3 32 32 H 1.09000 * 109.46619 * 239.99710 * 2 1 3 33 33 H 1.08998 * 109.46587 * 120.00173 * 2 1 3 34 34 H 1.08999 * 109.58797 * 65.59368 * 5 3 2 35 35 H 1.09001 * 109.58653 * 305.16622 * 5 3 2 36 36 H 1.07998 * 120.43705 * 0.02562 * 10 9 7 37 37 H 1.08004 * 119.51402 * 180.02562 * 11 10 9 38 38 H 0.96700 * 113.99341 * 89.99933 * 14 13 12 39 39 H 1.07997 * 120.52676 * 180.02562 * 15 13 12 40 40 H 1.08995 * 109.58717 * 65.92650 * 16 6 5 41 41 H 1.08997 * 109.58372 * 186.35765 * 16 6 5 42 42 H 1.08996 * 109.63612 * 294.87443 * 17 16 6 43 43 H 1.09000 * 109.43699 * 174.72368 * 17 16 6 44 44 H 0.97001 * 119.99492 * 334.99711 * 20 18 3 45 45 H 0.97005 * 119.99983 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6067 1.9816 0.8424 5 6 1.6352 2.1279 -1.3087 6 7 2.2410 3.4659 -1.3490 7 6 1.4807 4.5578 -1.5635 8 8 0.2714 4.4546 -1.6201 9 6 2.1196 5.8842 -1.7300 10 6 3.2979 6.0262 -2.4719 11 6 3.8622 7.2785 -2.6032 12 7 3.3074 8.3355 -2.0419 13 6 2.1953 8.2487 -1.3329 14 8 1.6659 9.3670 -0.7760 15 6 1.5624 7.0257 -1.1513 16 6 3.6925 3.5902 -1.1571 17 6 4.0735 2.8889 0.1555 18 6 3.5656 1.4455 0.1221 19 1 3.9994 0.9276 -0.7333 20 7 3.9579 0.7616 1.3569 21 6 5.1965 0.1864 1.4571 22 1 5.8840 0.2365 0.6258 23 6 5.5679 -0.4621 2.6270 24 7 4.7297 -0.5235 3.6399 25 14 7.2573 -1.2474 2.7635 26 1 8.2225 -0.2550 3.3007 27 1 7.1877 -2.4154 3.6779 28 1 7.7046 -1.6961 1.4205 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.5497 2.2168 -1.3541 35 1 1.9914 1.5400 -2.1546 36 1 3.7594 5.1669 -2.9355 37 1 4.7712 7.3952 -3.1746 38 1 1.0357 9.8293 -1.3454 39 1 0.6537 6.9590 -0.5716 40 1 4.2129 3.1190 -1.9908 41 1 3.9648 4.6441 -1.1023 42 1 3.6209 3.4143 0.9963 43 1 5.1579 2.8904 0.2660 44 1 3.3402 0.7164 2.1034 45 1 4.9894 -0.9763 4.4575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037828662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:34 Heat of formation + Delta-G solvation = -49.617672 kcal Electronic energy + Delta-G solvation = -27234.521817 eV Core-core repulsion = 23444.598692 eV Total energy + Delta-G solvation = -3789.923126 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07702 -40.85364 -39.18085 -38.05096 -36.29481 -35.39900 -33.75358 -33.45437 -31.45904 -31.09544 -30.01327 -27.21675 -25.66946 -25.15228 -24.47505 -24.01335 -22.24759 -21.54111 -20.81377 -19.51600 -19.04143 -18.45916 -17.60463 -17.44564 -17.01158 -16.73791 -16.40012 -16.10655 -15.59900 -15.58545 -15.31442 -15.00492 -14.75122 -14.50360 -14.44026 -14.22799 -14.00224 -13.61400 -13.30594 -13.07174 -13.04853 -12.84719 -12.78646 -12.59132 -12.53930 -12.19734 -12.07558 -11.84755 -11.60647 -11.53857 -11.41983 -11.11013 -11.03017 -10.83426 -10.47570 -9.99870 -9.77348 -8.95048 -7.89920 -5.17456 -0.36431 -0.09980 1.46131 1.49873 1.50340 1.58514 1.82442 2.47796 2.58992 2.70811 3.15731 3.43815 3.67267 3.73326 3.78598 3.85366 3.89341 3.97258 4.05933 4.18584 4.31628 4.33325 4.40429 4.45955 4.57759 4.63124 4.67144 4.72398 4.78563 4.79981 4.87938 4.90752 5.00614 5.03741 5.15796 5.28068 5.35140 5.40671 5.45672 5.52437 5.58787 5.64027 6.21833 6.31331 6.54453 6.82023 6.88655 7.37896 8.14204 8.36823 9.33743 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014372 B = 0.003412 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.823897 B = 8204.914151 C = 9410.774377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.094 4.094 4 H 0.046 0.954 5 C 0.125 3.875 6 N -0.593 5.593 7 C 0.558 3.442 8 O -0.569 6.569 9 C -0.074 4.074 10 C -0.144 4.144 11 C 0.129 3.871 12 N -0.511 5.511 13 C 0.306 3.694 14 O -0.490 6.490 15 C -0.149 4.149 16 C 0.104 3.896 17 C -0.145 4.145 18 C 0.179 3.821 19 H 0.056 0.944 20 N -0.732 5.732 21 C -0.228 4.228 22 H 0.081 0.919 23 C -0.077 4.077 24 N -0.972 5.972 25 Si 0.967 3.033 26 H -0.291 1.291 27 H -0.303 1.303 28 H -0.266 1.266 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.177 0.823 37 H 0.206 0.794 38 H 0.422 0.578 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.369 0.631 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.645 13.693 -17.331 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.114 4.114 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.346 3.654 8 O -0.449 6.449 9 C -0.085 4.085 10 C -0.164 4.164 11 C -0.028 4.028 12 N -0.231 5.231 13 C 0.127 3.873 14 O -0.301 6.301 15 C -0.171 4.171 16 C -0.018 4.018 17 C -0.185 4.185 18 C 0.070 3.930 19 H 0.074 0.926 20 N -0.371 5.371 21 C -0.360 4.360 22 H 0.099 0.901 23 C -0.269 4.269 24 N -0.623 5.623 25 Si 0.797 3.203 26 H -0.218 1.218 27 H -0.230 1.230 28 H -0.191 1.191 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.194 0.806 37 H 0.223 0.777 38 H 0.283 0.717 39 H 0.160 0.840 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.201 0.799 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.427 14.241 -17.013 22.624 hybrid contribution -0.207 -1.185 1.153 1.666 sum -4.634 13.056 -15.860 21.059 Atomic orbital electron populations 1.21787 0.95016 1.01909 1.01660 1.21351 0.95931 0.95055 1.02121 1.21638 0.95969 0.96550 0.97268 0.93495 1.21765 0.99512 0.81114 0.97335 1.48112 1.09215 1.06298 1.68765 1.18502 0.86123 0.84352 0.76416 1.90759 1.14981 1.86337 1.52852 1.20185 0.96345 0.92803 0.99214 1.22758 0.93783 1.01232 0.98655 1.23178 0.99388 0.85737 0.94449 1.67136 1.10872 1.36250 1.08864 1.19039 0.90035 0.86373 0.91813 1.84755 1.62991 1.38503 1.43812 1.22184 1.01542 0.91903 1.01503 1.22404 0.78388 1.02779 0.98219 1.22588 1.01505 0.97827 0.96623 1.20446 0.92224 0.91119 0.89193 0.92626 1.42611 1.15484 1.64982 1.13981 1.19617 0.92540 1.25506 0.98370 0.90117 1.25483 1.01496 1.03312 0.96626 1.69823 1.37102 1.50215 1.05189 0.85232 0.80251 0.77324 0.77530 1.21841 1.22968 1.19073 0.92095 0.93925 0.91543 0.91216 0.93604 0.89339 0.88729 0.80573 0.77735 0.71653 0.84038 0.87613 0.87917 0.94474 0.91114 0.79948 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.67 71.98 0.70 -3.12 16 2 C -0.11 -3.28 5.31 30.60 0.16 -3.12 16 3 C -0.09 -2.92 1.92 -10.72 -0.02 -2.94 16 4 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 5 C 0.12 3.14 5.33 86.36 0.46 3.60 16 6 N -0.59 -14.28 2.97 -821.12 -2.44 -16.72 16 7 C 0.56 14.71 7.37 86.88 0.64 15.35 16 8 O -0.57 -18.84 16.38 -3.75 -0.06 -18.90 16 9 C -0.07 -1.60 5.13 -19.90 -0.10 -1.70 16 10 C -0.14 -2.09 7.49 22.63 0.17 -1.92 16 11 C 0.13 1.78 11.17 84.62 0.94 2.73 16 12 N -0.51 -10.20 10.36 -309.13 -3.20 -13.40 16 13 C 0.31 6.38 7.74 84.80 0.66 7.04 16 14 O -0.49 -8.90 13.56 -90.05 -1.22 -10.12 16 15 C -0.15 -3.30 9.70 22.75 0.22 -3.08 16 16 C 0.10 2.16 4.98 86.51 0.43 2.59 16 17 C -0.14 -4.43 5.67 30.82 0.17 -4.25 16 18 C 0.18 6.27 2.19 45.02 0.10 6.36 16 19 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 20 N -0.73 -34.51 4.33 -322.80 -1.40 -35.91 16 21 C -0.23 -11.88 9.93 84.03 0.83 -11.05 16 22 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 23 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 25 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 28 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.51 6.70 -2.39 -0.02 1.50 16 32 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.78 7.22 -2.39 -0.02 1.76 16 34 H 0.09 2.37 5.71 -2.39 -0.01 2.36 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.18 1.56 6.69 -2.91 -0.02 1.54 16 37 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.42 3.13 9.06 -74.06 -0.67 2.46 16 39 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.10 1.81 4.74 -2.39 -0.01 1.80 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.37 19.49 7.51 -92.71 -0.70 18.79 16 45 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -73.04 363.74 -0.51 -73.56 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.34 Total: 30.33 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.83 Total: 2.66 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -6.75 Total: -124.40 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.28 Total: -29.02 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.04 -0.51 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037828662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.939 kcal (2) G-P(sol) polarization free energy of solvation -73.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds