Wall clock time and date at job start Tue Mar 31 2020 13:29:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.47053 * 2 1
4 4 H 1.08998 * 109.50232 * 304.93744 * 3 2 1
5 5 C 1.53191 * 109.49920 * 65.00033 * 3 2 1
6 6 N 1.46924 * 108.78030 * 174.58566 * 5 3 2
7 7 C 1.34773 * 120.63411 * 126.36378 * 6 5 3
8 8 O 1.21589 * 120.00049 * 3.79573 * 7 6 5
9 9 C 1.47617 * 120.00537 * 183.79362 * 7 6 5
10 10 C 1.40286 * 120.49557 * 309.79594 * 9 7 6
11 11 C 1.37958 * 118.35408 * 179.97438 * 10 9 7
12 12 C 1.39161 * 119.26499 * 359.97438 * 11 10 9
13 13 O 1.35495 * 119.52577 * 179.97438 * 12 11 10
14 14 N 1.32410 * 120.94802 * 0.25717 * 12 11 10
15 15 C 1.31666 * 121.79822 * 359.46951 * 14 12 11
16 16 C 1.46929 * 118.73871 * 306.64764 * 6 5 3
17 17 C 1.52762 * 109.01132 * 53.30210 * 16 6 5
18 18 C 1.53039 * 109.38156 * 305.59332 * 17 16 6
19 19 H 1.09000 * 109.45077 * 181.24908 * 18 17 16
20 20 N 1.46503 * 109.46283 * 301.21853 * 18 17 16
21 21 C 1.36935 * 119.99869 * 275.07089 * 20 18 17
22 22 H 1.08005 * 120.00120 * 359.97438 * 21 20 18
23 23 C 1.38805 * 120.00171 * 179.97438 * 21 20 18
24 24 N 1.31614 * 120.00094 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00240 * 180.02562 * 23 21 20
26 26 H 1.48508 * 109.47394 * 59.99835 * 25 23 21
27 27 H 1.48496 * 109.47300 * 179.97438 * 25 23 21
28 28 H 1.48501 * 109.47115 * 299.99613 * 25 23 21
29 29 H 1.08995 * 109.46878 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47197 * 300.00269 * 1 2 3
31 31 H 1.08995 * 109.47152 * 60.00152 * 1 2 3
32 32 H 1.08990 * 109.47321 * 240.00076 * 2 1 3
33 33 H 1.09003 * 109.47059 * 119.99578 * 2 1 3
34 34 H 1.09003 * 109.58746 * 54.79702 * 5 3 2
35 35 H 1.08999 * 109.70217 * 294.44310 * 5 3 2
36 36 H 1.07993 * 120.82296 * 359.97438 * 10 9 7
37 37 H 1.08001 * 120.36546 * 180.02562 * 11 10 9
38 38 H 0.96701 * 114.00564 * 90.00225 * 13 12 11
39 39 H 1.07998 * 119.68210 * 180.24709 * 15 14 12
40 40 H 1.08997 * 109.58704 * 173.14063 * 16 6 5
41 41 H 1.08998 * 109.58215 * 293.56294 * 16 6 5
42 42 H 1.08991 * 109.56760 * 185.55759 * 17 16 6
43 43 H 1.09001 * 109.36040 * 65.49828 * 17 16 6
44 44 H 0.96997 * 120.00004 * 95.07033 * 20 18 17
45 45 H 0.97005 * 120.00756 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6065 1.9817 -0.8423
5 6 1.6350 2.1280 1.3088
6 7 2.2415 3.4656 1.3494
7 6 1.4815 4.5580 1.5628
8 8 0.2936 4.4368 1.7925
9 6 2.0910 5.9017 1.5178
10 6 3.2544 6.1806 2.2504
11 6 3.7870 7.4510 2.1757
12 6 3.1587 8.4065 1.3826
13 8 3.6769 9.6561 1.3058
14 7 2.0587 8.1135 0.7063
15 6 1.5197 6.9128 0.7447
16 6 3.6913 3.5905 1.1466
17 6 4.0741 2.8880 -0.1548
18 6 3.5656 1.4450 -0.1216
19 1 3.8573 0.9361 -1.0403
20 7 4.1479 0.7485 1.0282
21 6 5.3860 0.1727 0.9247
22 1 5.9330 0.2317 -0.0047
23 6 5.9381 -0.4867 2.0142
24 7 5.2718 -0.5582 3.1470
25 14 7.6273 -1.2716 1.8732
26 1 8.6310 -0.2295 1.5384
27 1 7.9872 -1.9075 3.1660
28 1 7.6070 -2.3013 0.8034
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.9907 1.5397 2.1547
35 1 0.5498 2.2172 1.3563
36 1 3.7216 5.4196 2.8577
37 1 4.6820 7.7011 2.7260
38 1 4.3214 9.7717 0.5942
39 1 0.6240 6.7103 0.1763
40 1 3.9622 4.6444 1.0848
41 1 4.2181 3.1239 1.9790
42 1 5.1584 2.8892 -0.2649
43 1 3.6219 3.4138 -0.9957
44 1 3.6565 0.6952 1.8628
45 1 5.6576 -1.0187 3.9086
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001037967278.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:49
Heat of formation + Delta-G solvation = -25.028706 kcal
Electronic energy + Delta-G solvation = -27650.652778 eV
Core-core repulsion = 23861.795910 eV
Total energy + Delta-G solvation = -3788.856868 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-41.04398 -39.78561 -37.98347 -37.09573 -34.66064 -33.81867 -32.83195 -31.76641
-30.80055 -29.51162 -28.47520 -25.62670 -24.25494 -23.86273 -23.55374 -23.34109
-20.88962 -20.16159 -19.17463 -18.50712 -17.50913 -17.29858 -16.86026 -16.41684
-15.92608 -15.04382 -14.82957 -14.66854 -14.52698 -14.06868 -13.98409 -13.74625
-13.44149 -13.33669 -13.18369 -12.98423 -12.80627 -12.51586 -12.27678 -12.10796
-11.80433 -11.47220 -11.14494 -11.05528 -10.86590 -10.82185 -10.38778 -10.33138
-10.25523 -10.16718 -9.95663 -9.85073 -9.61822 -9.53488 -9.16917 -8.97364
-8.34074 -7.04243 -5.84908 -3.13702 0.46500 0.91630 2.65483 2.99884
3.30750 3.37219 3.42874 3.43772 3.51799 4.34326 4.46009 4.51999
4.58686 4.76124 4.97430 5.06787 5.21156 5.27471 5.37576 5.42332
5.47360 5.52898 5.61372 5.64910 5.74540 5.75992 5.77067 5.85925
6.01386 6.09291 6.10780 6.13048 6.28254 6.31798 6.36347 6.50923
6.55031 6.63943 6.70141 6.87172 6.93702 7.14348 7.52029 7.60827
7.62495 8.19700 8.33398 9.45232 10.01224 10.36432 11.37226
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012641 B = 0.004042 C = 0.003296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2214.524460 B = 6926.163069 C = 8493.886193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.110 4.110
3 C -0.103 4.103
4 H 0.067 0.933
5 C 0.118 3.882
6 N -0.590 5.590
7 C 0.561 3.439
8 O -0.542 6.542
9 C -0.181 4.181
10 C -0.027 4.027
11 C -0.188 4.188
12 C 0.323 3.677
13 O -0.482 6.482
14 N -0.505 5.505
15 C 0.173 3.827
16 C 0.105 3.895
17 C -0.150 4.150
18 C 0.178 3.822
19 H 0.052 0.948
20 N -0.718 5.718
21 C -0.240 4.240
22 H 0.069 0.931
23 C -0.009 4.009
24 N -0.932 5.932
25 Si 0.904 3.096
26 H -0.287 1.287
27 H -0.292 1.292
28 H -0.287 1.287
29 H 0.050 0.950
30 H 0.053 0.947
31 H 0.047 0.953
32 H 0.062 0.938
33 H 0.077 0.923
34 H 0.077 0.923
35 H 0.088 0.912
36 H 0.150 0.850
37 H 0.148 0.852
38 H 0.403 0.597
39 H 0.168 0.832
40 H 0.073 0.927
41 H 0.088 0.912
42 H 0.075 0.925
43 H 0.048 0.952
44 H 0.384 0.616
45 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.971 12.627 -5.632 14.385
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.148 4.148
3 C -0.123 4.123
4 H 0.085 0.915
5 C -0.003 4.003
6 N -0.321 5.321
7 C 0.348 3.652
8 O -0.420 6.420
9 C -0.186 4.186
10 C -0.053 4.053
11 C -0.210 4.210
12 C 0.145 3.855
13 O -0.290 6.290
14 N -0.223 5.223
15 C 0.015 3.985
16 C -0.017 4.017
17 C -0.191 4.191
18 C 0.068 3.932
19 H 0.070 0.930
20 N -0.361 5.361
21 C -0.371 4.371
22 H 0.087 0.913
23 C -0.206 4.206
24 N -0.580 5.580
25 Si 0.735 3.265
26 H -0.214 1.214
27 H -0.218 1.218
28 H -0.213 1.213
29 H 0.069 0.931
30 H 0.072 0.928
31 H 0.066 0.934
32 H 0.080 0.920
33 H 0.096 0.904
34 H 0.096 0.904
35 H 0.106 0.894
36 H 0.168 0.832
37 H 0.166 0.834
38 H 0.261 0.739
39 H 0.185 0.815
40 H 0.091 0.909
41 H 0.106 0.894
42 H 0.094 0.906
43 H 0.067 0.933
44 H 0.219 0.781
45 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -5.113 13.266 -5.544 15.260
hybrid contribution 1.757 -1.090 0.369 2.100
sum -3.357 12.176 -5.175 13.649
Atomic orbital electron populations
1.21858 0.96767 1.01107 1.01373 1.21414 0.94310 0.95619 1.03436
1.21755 0.97402 0.96237 0.96916 0.91499 1.21756 0.98865 0.81147
0.98567 1.48072 1.08804 1.06419 1.68830 1.17966 0.86086 0.83683
0.77470 1.90790 1.15128 1.86486 1.49612 1.21013 0.98314 0.96593
1.02668 1.21801 0.92101 0.96530 0.94896 1.22065 1.02899 0.92838
1.03148 1.19378 0.89559 0.84503 0.92108 1.84721 1.61542 1.26204
1.56506 1.67220 1.11457 1.21060 1.22609 1.22573 0.97109 0.85274
0.93563 1.21933 0.79046 1.00322 1.00409 1.22455 1.01880 0.99342
0.95433 1.20224 0.89729 0.90579 0.92693 0.93044 1.42464 1.19021
1.64032 1.10545 1.19164 0.93579 1.27273 0.97074 0.91323 1.24686
0.98494 1.01366 0.96007 1.69630 1.38145 1.47998 1.02222 0.86329
0.84343 0.79219 0.76610 1.21391 1.21791 1.21344 0.93122 0.92759
0.93351 0.91975 0.90445 0.90442 0.89379 0.83192 0.83423 0.73855
0.81507 0.90894 0.89375 0.90646 0.93327 0.78098 0.93444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.99 9.67 37.16 0.36 -1.63 16
2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16
3 C -0.10 -1.58 2.14 -90.50 -0.19 -1.77 16
4 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
5 C 0.12 1.89 5.02 -3.71 -0.02 1.87 16
6 N -0.59 -8.95 2.98 -174.23 -0.52 -9.47 16
7 C 0.56 8.65 7.25 -12.43 -0.09 8.56 16
8 O -0.54 -9.88 16.47 5.29 0.09 -9.80 16
9 C -0.18 -2.34 5.02 -104.82 -0.53 -2.86 16
10 C -0.03 -0.30 7.48 -38.91 -0.29 -0.60 16
11 C -0.19 -1.86 10.02 -39.34 -0.39 -2.25 16
12 C 0.32 3.58 7.74 -16.96 -0.13 3.45 16
13 O -0.48 -4.43 13.55 -18.18 -0.25 -4.68 16
14 N -0.51 -6.41 10.37 -12.97 -0.13 -6.54 16
15 C 0.17 2.15 10.90 -17.15 -0.19 1.97 16
16 C 0.10 1.53 5.11 -3.93 -0.02 1.51 16
17 C -0.15 -2.31 5.76 -26.83 -0.15 -2.46 16
18 C 0.18 3.11 2.53 -67.89 -0.17 2.94 16
19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16
20 N -0.72 -15.61 3.72 -53.38 -0.20 -15.81 16
21 C -0.24 -5.99 9.93 -15.06 -0.15 -6.14 16
22 H 0.07 1.68 7.83 -52.48 -0.41 1.27 16
23 C -0.01 -0.25 5.50 -17.44 -0.10 -0.34 16
24 N -0.93 -26.15 13.06 55.49 0.72 -25.43 16
25 Si 0.90 21.12 29.55 -169.99 -5.02 16.10 16
26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16
27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16
31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
33 H 0.08 1.38 7.69 -51.93 -0.40 0.98 16
34 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16
35 H 0.09 1.41 5.74 -51.93 -0.30 1.11 16
36 H 0.15 1.55 7.11 -52.49 -0.37 1.18 16
37 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16
38 H 0.40 1.61 9.06 45.56 0.41 2.02 16
39 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16
40 H 0.07 0.90 4.54 -51.93 -0.24 0.67 16
41 H 0.09 1.50 7.74 -51.93 -0.40 1.10 16
42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
44 H 0.38 8.99 5.94 -40.82 -0.24 8.75 16
45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
LS Contribution 360.64 15.07 5.43 5.43
Total: -1.00 -30.85 360.64 -7.66 -38.51
By element:
Atomic # 1 Polarization: 16.84 SS G_CDS: -5.58 Total: 11.27 kcal
Atomic # 6 Polarization: 2.62 SS G_CDS: -2.20 Total: 0.42 kcal
Atomic # 7 Polarization: -57.13 SS G_CDS: -0.13 Total: -57.25 kcal
Atomic # 8 Polarization: -14.31 SS G_CDS: -0.16 Total: -14.47 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -30.85 -7.66 -38.51 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037967278.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.481 kcal
(2) G-P(sol) polarization free energy of solvation -30.852 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.372 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.029 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds