Wall clock time and date at job start Tue Mar 31 2020 13:29:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52998 * 109.47053 * 2 1
4 4 H 1.08998 * 109.50232 * 304.93744 * 3 2 1
5 5 C 1.53191 * 109.49920 * 65.00033 * 3 2 1
6 6 N 1.46924 * 108.78030 * 174.58566 * 5 3 2
7 7 C 1.34773 * 120.63411 * 126.36378 * 6 5 3
8 8 O 1.21589 * 120.00049 * 3.79573 * 7 6 5
9 9 C 1.47617 * 120.00537 * 183.79362 * 7 6 5
10 10 C 1.40286 * 120.49557 * 309.79594 * 9 7 6
11 11 C 1.37958 * 118.35408 * 179.97438 * 10 9 7
12 12 C 1.39161 * 119.26499 * 359.97438 * 11 10 9
13 13 O 1.35495 * 119.52577 * 179.97438 * 12 11 10
14 14 N 1.32410 * 120.94802 * 0.25717 * 12 11 10
15 15 C 1.31666 * 121.79822 * 359.46951 * 14 12 11
16 16 C 1.46929 * 118.73871 * 306.64764 * 6 5 3
17 17 C 1.52762 * 109.01132 * 53.30210 * 16 6 5
18 18 C 1.53039 * 109.38156 * 305.59332 * 17 16 6
19 19 H 1.09000 * 109.45077 * 181.24908 * 18 17 16
20 20 N 1.46503 * 109.46283 * 301.21853 * 18 17 16
21 21 C 1.36935 * 119.99869 * 275.07089 * 20 18 17
22 22 H 1.08005 * 120.00120 * 359.97438 * 21 20 18
23 23 C 1.38805 * 120.00171 * 179.97438 * 21 20 18
24 24 N 1.31614 * 120.00094 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00240 * 180.02562 * 23 21 20
26 26 H 1.48508 * 109.47394 * 59.99835 * 25 23 21
27 27 H 1.48496 * 109.47300 * 179.97438 * 25 23 21
28 28 H 1.48501 * 109.47115 * 299.99613 * 25 23 21
29 29 H 1.08995 * 109.46878 * 180.02562 * 1 2 3
30 30 H 1.09006 * 109.47197 * 300.00269 * 1 2 3
31 31 H 1.08995 * 109.47152 * 60.00152 * 1 2 3
32 32 H 1.08990 * 109.47321 * 240.00076 * 2 1 3
33 33 H 1.09003 * 109.47059 * 119.99578 * 2 1 3
34 34 H 1.09003 * 109.58746 * 54.79702 * 5 3 2
35 35 H 1.08999 * 109.70217 * 294.44310 * 5 3 2
36 36 H 1.07993 * 120.82296 * 359.97438 * 10 9 7
37 37 H 1.08001 * 120.36546 * 180.02562 * 11 10 9
38 38 H 0.96701 * 114.00564 * 90.00225 * 13 12 11
39 39 H 1.07998 * 119.68210 * 180.24709 * 15 14 12
40 40 H 1.08997 * 109.58704 * 173.14063 * 16 6 5
41 41 H 1.08998 * 109.58215 * 293.56294 * 16 6 5
42 42 H 1.08991 * 109.56760 * 185.55759 * 17 16 6
43 43 H 1.09001 * 109.36040 * 65.49828 * 17 16 6
44 44 H 0.96997 * 120.00004 * 95.07033 * 20 18 17
45 45 H 0.97005 * 120.00756 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6065 1.9817 -0.8423
5 6 1.6350 2.1280 1.3088
6 7 2.2415 3.4656 1.3494
7 6 1.4815 4.5580 1.5628
8 8 0.2936 4.4368 1.7925
9 6 2.0910 5.9017 1.5178
10 6 3.2544 6.1806 2.2504
11 6 3.7870 7.4510 2.1757
12 6 3.1587 8.4065 1.3826
13 8 3.6769 9.6561 1.3058
14 7 2.0587 8.1135 0.7063
15 6 1.5197 6.9128 0.7447
16 6 3.6913 3.5905 1.1466
17 6 4.0741 2.8880 -0.1548
18 6 3.5656 1.4450 -0.1216
19 1 3.8573 0.9361 -1.0403
20 7 4.1479 0.7485 1.0282
21 6 5.3860 0.1727 0.9247
22 1 5.9330 0.2317 -0.0047
23 6 5.9381 -0.4867 2.0142
24 7 5.2718 -0.5582 3.1470
25 14 7.6273 -1.2716 1.8732
26 1 8.6310 -0.2295 1.5384
27 1 7.9872 -1.9075 3.1660
28 1 7.6070 -2.3013 0.8034
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5138 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 1.9907 1.5397 2.1547
35 1 0.5498 2.2172 1.3563
36 1 3.7216 5.4196 2.8577
37 1 4.6820 7.7011 2.7260
38 1 4.3214 9.7717 0.5942
39 1 0.6240 6.7103 0.1763
40 1 3.9622 4.6444 1.0848
41 1 4.2181 3.1239 1.9790
42 1 5.1584 2.8892 -0.2649
43 1 3.6219 3.4138 -0.9957
44 1 3.6565 0.6952 1.8628
45 1 5.6576 -1.0187 3.9086
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001037967278.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:29:48
Heat of formation + Delta-G solvation = -47.496952 kcal
Electronic energy + Delta-G solvation = -27651.627075 eV
Core-core repulsion = 23861.795910 eV
Total energy + Delta-G solvation = -3789.831164 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.06562 -40.89066 -39.24577 -37.95587 -36.00127 -35.38086 -33.76944 -33.38445
-31.73097 -31.03628 -29.82335 -26.90133 -25.54313 -25.30568 -24.59766 -24.53053
-22.17482 -21.31752 -19.97303 -19.84743 -19.22660 -18.49033 -17.90687 -17.45934
-16.93686 -16.55446 -16.11463 -16.02939 -15.60045 -15.53879 -15.26405 -14.79414
-14.78166 -14.51859 -14.35716 -14.18849 -14.00428 -13.76133 -13.51459 -13.09726
-12.90749 -12.84821 -12.79815 -12.63699 -12.35605 -12.18748 -12.13087 -11.83002
-11.58383 -11.43658 -11.25806 -11.11927 -10.98583 -10.74815 -10.51524 -10.07192
-9.64400 -8.89628 -7.86148 -5.12101 -0.42971 0.05824 1.49989 1.51818
1.52842 1.58400 1.87381 2.44072 2.61865 2.64669 3.30787 3.47761
3.58525 3.69628 3.81356 3.86776 3.94230 4.01726 4.09270 4.18558
4.26997 4.36554 4.45537 4.48123 4.58880 4.61024 4.69213 4.79857
4.83932 4.87890 4.90821 5.01528 5.04913 5.18377 5.22109 5.25208
5.29312 5.34996 5.42067 5.52706 5.62043 5.66184 6.32611 6.35303
6.53665 6.77603 6.97801 7.43554 8.19422 8.43289 9.36646
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.012641 B = 0.004042 C = 0.003296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2214.524460 B = 6926.163069 C = 8493.886193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.105 4.105
3 C -0.092 4.092
4 H 0.086 0.914
5 C 0.124 3.876
6 N -0.590 5.590
7 C 0.565 3.435
8 O -0.574 6.574
9 C -0.195 4.195
10 C -0.028 4.028
11 C -0.177 4.177
12 C 0.326 3.674
13 O -0.487 6.487
14 N -0.525 5.525
15 C 0.172 3.828
16 C 0.114 3.886
17 C -0.143 4.143
18 C 0.172 3.828
19 H 0.047 0.953
20 N -0.723 5.723
21 C -0.227 4.227
22 H 0.074 0.926
23 C -0.069 4.069
24 N -0.967 5.967
25 Si 0.960 3.040
26 H -0.279 1.279
27 H -0.303 1.303
28 H -0.284 1.284
29 H 0.058 0.942
30 H 0.050 0.950
31 H 0.063 0.937
32 H 0.062 0.938
33 H 0.045 0.955
34 H 0.052 0.948
35 H 0.088 0.912
36 H 0.156 0.844
37 H 0.177 0.823
38 H 0.426 0.574
39 H 0.173 0.827
40 H 0.101 0.899
41 H 0.061 0.939
42 H 0.069 0.931
43 H 0.072 0.928
44 H 0.374 0.626
45 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.346 14.432 -7.037 16.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.143 4.143
3 C -0.112 4.112
4 H 0.104 0.896
5 C 0.002 3.998
6 N -0.320 5.320
7 C 0.353 3.647
8 O -0.455 6.455
9 C -0.201 4.201
10 C -0.054 4.054
11 C -0.198 4.198
12 C 0.148 3.852
13 O -0.299 6.299
14 N -0.244 5.244
15 C 0.014 3.986
16 C -0.008 4.008
17 C -0.183 4.183
18 C 0.063 3.937
19 H 0.065 0.935
20 N -0.364 5.364
21 C -0.359 4.359
22 H 0.092 0.908
23 C -0.261 4.261
24 N -0.618 5.618
25 Si 0.791 3.209
26 H -0.205 1.205
27 H -0.230 1.230
28 H -0.211 1.211
29 H 0.077 0.923
30 H 0.069 0.931
31 H 0.082 0.918
32 H 0.081 0.919
33 H 0.063 0.937
34 H 0.071 0.929
35 H 0.106 0.894
36 H 0.174 0.826
37 H 0.194 0.806
38 H 0.289 0.711
39 H 0.190 0.810
40 H 0.119 0.881
41 H 0.080 0.920
42 H 0.088 0.912
43 H 0.091 0.909
44 H 0.207 0.793
45 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges -4.463 15.106 -7.018 17.244
hybrid contribution 1.551 -1.534 0.743 2.304
sum -2.912 13.572 -6.276 15.234
Atomic orbital electron populations
1.21792 0.94773 1.01921 1.01927 1.21336 0.96044 0.95154 1.01802
1.21664 0.95862 0.96483 0.97158 0.89572 1.21592 0.98779 0.81501
0.97945 1.48076 1.09015 1.06163 1.68720 1.18295 0.85617 0.84437
0.76322 1.90768 1.16623 1.87064 1.51033 1.20807 0.99516 0.95244
1.04499 1.21909 0.91497 0.97450 0.94522 1.22287 1.03352 0.91752
1.02382 1.19606 0.89081 0.85128 0.91426 1.84676 1.62239 1.25165
1.57793 1.67258 1.12451 1.21048 1.23623 1.22632 0.97223 0.85159
0.93538 1.21848 0.78378 1.01658 0.98954 1.22329 1.01561 0.97766
0.96678 1.20442 0.91022 0.91419 0.90781 0.93466 1.42560 1.18177
1.64306 1.11389 1.19512 0.94294 1.25383 0.96715 0.90760 1.25316
1.01547 1.03129 0.96104 1.69783 1.39519 1.49772 1.02769 0.85410
0.81239 0.78456 0.75797 1.20534 1.23022 1.21083 0.92264 0.93138
0.91768 0.91937 0.93652 0.92945 0.89367 0.82615 0.80583 0.71142
0.81020 0.88130 0.92040 0.91231 0.90899 0.79260 0.94433
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.66 9.67 71.98 0.70 -2.96 16
2 C -0.11 -3.18 5.19 30.59 0.16 -3.02 16
3 C -0.09 -2.75 2.14 -10.72 -0.02 -2.77 16
4 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16
5 C 0.12 3.98 5.02 86.36 0.43 4.41 16
6 N -0.59 -17.54 2.98 -823.40 -2.45 -19.99 16
7 C 0.56 17.00 7.25 86.72 0.63 17.63 16
8 O -0.57 -20.87 16.47 -4.00 -0.07 -20.93 16
9 C -0.20 -4.77 5.02 -19.99 -0.10 -4.87 16
10 C -0.03 -0.56 7.48 22.70 0.17 -0.39 16
11 C -0.18 -2.94 10.02 22.43 0.22 -2.71 16
12 C 0.33 6.32 7.74 84.83 0.66 6.97 16
13 O -0.49 -7.45 13.55 -87.96 -1.19 -8.64 16
14 N -0.52 -12.26 10.37 -307.83 -3.19 -15.45 16
15 C 0.17 4.04 10.90 85.03 0.93 4.96 16
16 C 0.11 3.19 5.11 86.22 0.44 3.63 16
17 C -0.14 -4.14 5.76 30.53 0.18 -3.97 16
18 C 0.17 5.89 2.53 45.02 0.11 6.00 16
19 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16
20 N -0.72 -31.79 3.72 -322.80 -1.20 -33.00 16
21 C -0.23 -11.35 9.93 84.03 0.83 -10.52 16
22 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16
23 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16
24 N -0.97 -55.76 13.06 21.65 0.28 -55.48 16
25 Si 0.96 43.76 29.55 68.60 2.03 45.79 16
26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16
27 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16
28 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16
29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
30 H 0.05 1.29 6.70 -2.38 -0.02 1.28 16
31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
33 H 0.04 1.66 7.69 -2.39 -0.02 1.64 16
34 H 0.05 1.95 6.64 -2.39 -0.02 1.93 16
35 H 0.09 2.84 5.74 -2.39 -0.01 2.82 16
36 H 0.16 2.94 7.11 -2.91 -0.02 2.92 16
37 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16
38 H 0.43 1.97 9.06 -74.06 -0.67 1.30 16
39 H 0.17 3.68 8.06 -2.91 -0.02 3.66 16
40 H 0.10 2.28 4.54 -2.39 -0.01 2.27 16
41 H 0.06 2.10 7.74 -2.39 -0.02 2.08 16
42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16
44 H 0.37 18.09 5.94 -92.71 -0.55 17.54 16
45 H 0.25 14.12 8.31 -92.70 -0.77 13.35 16
Total: -1.00 -66.72 360.64 -0.18 -66.90
By element:
Atomic # 1 Polarization: 31.78 SS G_CDS: -0.19 Total: 31.58 kcal
Atomic # 6 Polarization: 3.40 SS G_CDS: 5.80 Total: 9.20 kcal
Atomic # 7 Polarization: -117.34 SS G_CDS: -6.56 Total: -123.91 kcal
Atomic # 8 Polarization: -28.31 SS G_CDS: -1.26 Total: -29.57 kcal
Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -66.72 -0.18 -66.90 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001037967278.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.407 kcal
(2) G-P(sol) polarization free energy of solvation -66.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.315 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.497 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds