Wall clock time and date at job start Tue Mar 31 2020 13:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09004 * 109.87367 * 55.80574 * 3 2 1 5 5 C 1.54319 * 109.88634 * 294.79078 * 3 2 1 6 6 H 1.09001 * 110.71999 * 336.93444 * 5 3 2 7 7 N 1.46504 * 110.72187 * 100.02475 * 5 3 2 8 8 C 1.34778 * 119.99876 * 204.99993 * 7 5 3 9 9 O 1.21680 * 120.00142 * 0.02562 * 8 7 5 10 10 C 1.46719 * 119.99709 * 180.02562 * 8 7 5 11 11 C 1.36341 * 126.64391 * 359.69154 * 10 8 7 12 12 N 1.33699 * 107.45116 * 179.83713 * 11 10 8 13 13 C 1.30616 * 108.99427 * 0.43064 * 12 11 10 14 14 C 1.50700 * 125.41838 * 179.70698 * 13 12 11 15 15 C 1.52994 * 117.50466 * 8.77456 * 14 13 12 16 16 C 1.52993 * 117.50305 * 300.11111 * 14 13 12 17 17 O 1.33657 * 109.15568 * 359.73089 * 13 12 11 18 18 C 1.55149 * 102.94365 * 218.39208 * 5 3 2 19 19 C 1.54906 * 101.58353 * 35.49712 * 18 5 3 20 20 N 1.47015 * 109.87981 * 176.97907 * 3 2 1 21 21 C 1.36940 * 125.65120 * 298.39475 * 20 3 2 22 22 H 1.08000 * 120.00014 * 345.37578 * 21 20 3 23 23 C 1.38809 * 120.00346 * 165.38010 * 21 20 3 24 24 N 1.31628 * 119.99909 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00249 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47051 * 90.00023 * 25 23 21 27 27 H 1.48506 * 109.47077 * 209.99597 * 25 23 21 28 28 H 1.48494 * 109.47377 * 329.99591 * 25 23 21 29 29 H 1.09004 * 109.47068 * 185.57918 * 1 2 3 30 30 H 1.09000 * 109.47002 * 305.57796 * 1 2 3 31 31 H 1.08996 * 109.47271 * 65.57958 * 1 2 3 32 32 H 1.08994 * 109.46859 * 240.00397 * 2 1 3 33 33 H 1.09000 * 109.46963 * 120.00058 * 2 1 3 34 34 H 0.97001 * 119.99895 * 25.27731 * 7 5 3 35 35 H 1.07999 * 126.27463 * 359.97438 * 11 10 8 36 36 H 1.09010 * 115.54425 * 154.44332 * 14 13 12 37 37 H 1.09003 * 117.49229 * 359.97438 * 15 14 13 38 38 H 1.09000 * 117.50393 * 145.02001 * 15 14 13 39 39 H 1.09000 * 117.50116 * 214.98814 * 16 14 13 40 40 H 1.09003 * 117.49754 * 359.97438 * 16 14 13 41 41 H 1.09000 * 111.00976 * 153.57774 * 18 5 3 42 42 H 1.09001 * 111.00660 * 277.42427 * 18 5 3 43 43 H 1.09005 * 110.37406 * 204.15147 * 19 18 5 44 44 H 1.09006 * 110.36608 * 81.83322 * 19 18 5 45 45 H 0.96996 * 120.00130 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9839 0.8479 5 6 1.6413 2.1402 -1.3174 6 1 1.4634 1.4067 -2.1038 7 7 0.4592 2.9830 -1.1205 8 6 -0.3449 3.2702 -2.1633 9 8 -0.0894 2.8292 -3.2682 10 6 -1.5284 4.1147 -1.9662 11 6 -1.9438 4.6726 -0.7936 12 7 -3.0571 5.3664 -1.0518 13 6 -3.3451 5.2511 -2.3206 14 6 -4.5295 5.8802 -3.0080 15 6 -5.3583 6.8869 -2.2077 16 6 -5.9232 5.4961 -2.5072 17 8 -2.4225 4.4860 -2.9121 18 6 2.8861 3.0076 -1.6419 19 6 4.0370 2.0990 -1.1427 20 7 3.5083 1.4537 0.0729 21 6 4.2604 0.9479 1.0994 22 1 3.7942 0.7099 2.0441 23 6 5.6220 0.7412 0.9260 24 7 6.1902 1.0309 -0.2255 25 14 6.6477 0.0506 2.3260 26 1 6.6644 -1.4320 2.2429 27 1 8.0361 0.5676 2.2243 28 1 6.0583 0.4671 3.6238 29 1 -0.3633 -1.0228 0.0999 30 1 -0.3633 0.5979 0.8358 31 1 -0.3633 0.4248 -0.9357 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.2575 3.3376 -0.2405 35 1 -1.4607 4.5742 0.1673 36 1 -4.4110 6.0621 -4.0763 37 1 -5.0471 7.0939 -1.1838 38 1 -5.7854 7.7309 -2.7494 39 1 -6.7217 5.4256 -3.2457 40 1 -5.9835 4.7880 -1.6807 41 1 2.9678 3.1884 -2.7137 42 1 2.8624 3.9471 -1.0896 43 1 4.9161 2.6973 -0.9029 44 1 4.2815 1.3487 -1.8947 45 1 7.1417 0.8868 -0.3466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087606094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:56 Heat of formation + Delta-G solvation = 39.767891 kcal Electronic energy + Delta-G solvation = -26805.832381 eV Core-core repulsion = 23019.785304 eV Total energy + Delta-G solvation = -3786.047077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.66217 -39.77490 -37.86381 -37.58092 -35.17075 -34.11664 -32.85030 -31.91477 -30.58931 -28.93972 -26.76807 -25.30981 -24.22916 -23.61626 -22.85324 -22.27080 -21.03927 -20.77580 -20.30753 -19.84209 -18.12580 -17.25207 -17.00527 -16.88195 -16.15793 -15.24881 -15.08303 -14.86351 -14.74603 -14.44752 -14.05377 -13.79964 -13.50049 -13.26703 -12.79150 -12.73420 -12.11498 -12.05774 -11.99174 -11.84190 -11.71982 -11.30761 -11.24528 -11.18329 -11.03377 -10.92453 -10.88853 -10.68624 -10.52058 -10.39853 -10.11610 -9.99272 -9.79846 -9.69943 -9.14291 -8.77220 -8.62612 -6.85743 -5.79434 -3.16251 0.60771 1.88367 2.08214 3.06526 3.24686 3.32289 3.36733 3.42209 3.43738 3.71741 4.23280 4.35275 4.43307 4.45994 4.55739 4.64725 5.10529 5.16485 5.19394 5.30221 5.35963 5.41772 5.42834 5.49952 5.56168 5.67176 5.69512 5.73367 5.79384 5.86591 6.00352 6.12891 6.17211 6.35319 6.40169 6.47585 6.60251 6.64745 6.88358 7.05476 7.25237 7.44891 7.47542 7.57600 7.74674 8.08790 8.22180 9.13585 9.74470 10.41610 11.32521 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002564 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.235097 B =10916.112401 C =11077.098676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.161 3.839 4 H 0.037 0.963 5 C 0.139 3.861 6 H 0.100 0.900 7 N -0.694 5.694 8 C 0.598 3.402 9 O -0.522 6.522 10 C -0.090 4.090 11 C 0.022 3.978 12 N -0.484 5.484 13 C 0.240 3.760 14 C -0.087 4.087 15 C -0.144 4.144 16 C -0.153 4.153 17 O -0.165 6.165 18 C -0.158 4.158 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.229 4.229 22 H 0.076 0.924 23 C -0.003 4.003 24 N -0.916 5.916 25 Si 0.911 3.089 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.195 0.805 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.029 0.971 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.352 9.350 -2.898 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.036 3.964 6 H 0.118 0.882 7 N -0.345 5.345 8 C 0.382 3.618 9 O -0.399 6.399 10 C -0.146 4.146 11 C -0.121 4.121 12 N -0.213 5.213 13 C 0.036 3.964 14 C -0.106 4.106 15 C -0.181 4.181 16 C -0.191 4.191 17 O -0.049 6.049 18 C -0.197 4.197 19 C 0.049 3.951 20 N -0.318 5.318 21 C -0.357 4.357 22 H 0.094 0.906 23 C -0.200 4.200 24 N -0.562 5.562 25 Si 0.741 3.259 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.212 0.788 36 H 0.155 0.845 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.253 9.305 -3.313 23.436 hybrid contribution 1.019 -0.697 0.647 1.394 sum -20.234 8.608 -2.665 22.149 Atomic orbital electron populations 1.21785 0.97276 1.00647 1.00857 1.22025 0.93526 0.99047 1.02590 1.21075 0.87268 0.93433 0.92906 0.94562 1.22272 0.82487 0.92254 0.99392 0.88240 1.45695 1.26486 1.51799 1.10506 1.16250 0.80392 0.79835 0.85334 1.90878 1.72791 1.52345 1.23838 1.22912 0.96387 1.07276 0.88034 1.23700 0.93494 0.95913 0.98996 1.70266 1.15201 1.22044 1.13808 1.25407 0.91680 0.91958 0.87380 1.20164 0.85832 1.05319 0.99308 1.23135 1.00018 0.92953 1.01985 1.23165 0.93177 0.99151 1.03571 1.84469 1.30351 1.51722 1.38392 1.23465 0.96494 0.99160 1.00630 1.21448 0.93066 0.92910 0.87688 1.44437 0.98205 1.68396 1.20745 1.18929 0.89889 1.36091 0.90824 0.90649 1.24919 0.97257 1.00818 0.97003 1.69924 1.10727 1.52674 1.22878 0.86148 0.79665 0.78882 0.81212 1.21491 1.21675 1.20620 0.93566 0.93403 0.93441 0.92247 0.91539 0.76462 0.78809 0.84533 0.86907 0.87268 0.87195 0.87846 0.91676 0.91789 0.90632 0.95251 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.58 37.16 0.36 -1.78 16 2 C -0.13 -2.37 5.41 -26.73 -0.14 -2.52 16 3 C 0.16 3.06 2.94 -66.96 -0.20 2.86 16 4 H 0.04 0.66 7.72 -51.93 -0.40 0.26 16 5 C 0.14 2.41 2.02 -66.10 -0.13 2.28 16 6 H 0.10 1.88 7.18 -51.93 -0.37 1.50 16 7 N -0.69 -9.73 4.90 -53.33 -0.26 -9.99 16 8 C 0.60 9.30 7.79 -12.83 -0.10 9.20 16 9 O -0.52 -10.15 16.75 1.35 0.02 -10.13 16 10 C -0.09 -1.23 7.22 -36.84 -0.27 -1.49 16 11 C 0.02 0.25 11.37 -17.42 -0.20 0.05 16 12 N -0.48 -5.75 10.79 -10.81 -0.12 -5.87 16 13 C 0.24 2.77 7.86 -12.80 -0.10 2.67 16 14 C -0.09 -0.66 6.33 -91.78 -0.58 -1.24 16 15 C -0.14 -0.83 10.13 -26.70 -0.27 -1.10 16 16 C -0.15 -0.88 10.24 -26.70 -0.27 -1.15 16 17 O -0.17 -2.32 10.79 0.57 0.01 -2.32 16 18 C -0.16 -2.97 6.77 -24.59 -0.17 -3.14 16 19 C 0.17 4.07 5.41 -2.53 -0.01 4.06 16 20 N -0.59 -14.16 3.13 -162.58 -0.51 -14.66 16 21 C -0.23 -6.03 9.75 -15.06 -0.15 -6.18 16 22 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 23 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 24 N -0.92 -26.10 10.57 55.49 0.59 -25.52 16 25 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.69 7.40 -51.93 -0.38 0.31 16 32 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 33 H 0.07 1.28 7.90 -51.93 -0.41 0.87 16 34 H 0.40 4.48 7.27 -40.82 -0.30 4.18 16 35 H 0.20 1.54 7.44 -52.49 -0.39 1.15 16 36 H 0.14 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.11 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.08 1.97 6.93 -51.93 -0.36 1.61 16 44 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -32.19 373.21 -8.79 -40.98 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.79 Total: 3.08 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -2.33 Total: 2.36 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.30 Total: -56.04 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.03 Total: -12.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.19 -8.79 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087606094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.752 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds