Wall clock time and date at job start Tue Mar 31 2020 13:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09004 * 109.87367 * 55.80574 * 3 2 1 5 5 C 1.54319 * 109.88634 * 294.79078 * 3 2 1 6 6 H 1.09001 * 110.71999 * 336.93444 * 5 3 2 7 7 N 1.46504 * 110.72187 * 100.02475 * 5 3 2 8 8 C 1.34778 * 119.99876 * 204.99993 * 7 5 3 9 9 O 1.21680 * 120.00142 * 0.02562 * 8 7 5 10 10 C 1.46719 * 119.99709 * 180.02562 * 8 7 5 11 11 C 1.36341 * 126.64391 * 359.69154 * 10 8 7 12 12 N 1.33699 * 107.45116 * 179.83713 * 11 10 8 13 13 C 1.30616 * 108.99427 * 0.43064 * 12 11 10 14 14 C 1.50700 * 125.41838 * 179.70698 * 13 12 11 15 15 C 1.52994 * 117.50466 * 8.77456 * 14 13 12 16 16 C 1.52993 * 117.50305 * 300.11111 * 14 13 12 17 17 O 1.33657 * 109.15568 * 359.73089 * 13 12 11 18 18 C 1.55149 * 102.94365 * 218.39208 * 5 3 2 19 19 C 1.54906 * 101.58353 * 35.49712 * 18 5 3 20 20 N 1.47015 * 109.87981 * 176.97907 * 3 2 1 21 21 C 1.36940 * 125.65120 * 298.39475 * 20 3 2 22 22 H 1.08000 * 120.00014 * 345.37578 * 21 20 3 23 23 C 1.38809 * 120.00346 * 165.38010 * 21 20 3 24 24 N 1.31628 * 119.99909 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00249 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47051 * 90.00023 * 25 23 21 27 27 H 1.48506 * 109.47077 * 209.99597 * 25 23 21 28 28 H 1.48494 * 109.47377 * 329.99591 * 25 23 21 29 29 H 1.09004 * 109.47068 * 185.57918 * 1 2 3 30 30 H 1.09000 * 109.47002 * 305.57796 * 1 2 3 31 31 H 1.08996 * 109.47271 * 65.57958 * 1 2 3 32 32 H 1.08994 * 109.46859 * 240.00397 * 2 1 3 33 33 H 1.09000 * 109.46963 * 120.00058 * 2 1 3 34 34 H 0.97001 * 119.99895 * 25.27731 * 7 5 3 35 35 H 1.07999 * 126.27463 * 359.97438 * 11 10 8 36 36 H 1.09010 * 115.54425 * 154.44332 * 14 13 12 37 37 H 1.09003 * 117.49229 * 359.97438 * 15 14 13 38 38 H 1.09000 * 117.50393 * 145.02001 * 15 14 13 39 39 H 1.09000 * 117.50116 * 214.98814 * 16 14 13 40 40 H 1.09003 * 117.49754 * 359.97438 * 16 14 13 41 41 H 1.09000 * 111.00976 * 153.57774 * 18 5 3 42 42 H 1.09001 * 111.00660 * 277.42427 * 18 5 3 43 43 H 1.09005 * 110.37406 * 204.15147 * 19 18 5 44 44 H 1.09006 * 110.36608 * 81.83322 * 19 18 5 45 45 H 0.96996 * 120.00130 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9839 0.8479 5 6 1.6413 2.1402 -1.3174 6 1 1.4634 1.4067 -2.1038 7 7 0.4592 2.9830 -1.1205 8 6 -0.3449 3.2702 -2.1633 9 8 -0.0894 2.8292 -3.2682 10 6 -1.5284 4.1147 -1.9662 11 6 -1.9438 4.6726 -0.7936 12 7 -3.0571 5.3664 -1.0518 13 6 -3.3451 5.2511 -2.3206 14 6 -4.5295 5.8802 -3.0080 15 6 -5.3583 6.8869 -2.2077 16 6 -5.9232 5.4961 -2.5072 17 8 -2.4225 4.4860 -2.9121 18 6 2.8861 3.0076 -1.6419 19 6 4.0370 2.0990 -1.1427 20 7 3.5083 1.4537 0.0729 21 6 4.2604 0.9479 1.0994 22 1 3.7942 0.7099 2.0441 23 6 5.6220 0.7412 0.9260 24 7 6.1902 1.0309 -0.2255 25 14 6.6477 0.0506 2.3260 26 1 6.6644 -1.4320 2.2429 27 1 8.0361 0.5676 2.2243 28 1 6.0583 0.4671 3.6238 29 1 -0.3633 -1.0228 0.0999 30 1 -0.3633 0.5979 0.8358 31 1 -0.3633 0.4248 -0.9357 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.2575 3.3376 -0.2405 35 1 -1.4607 4.5742 0.1673 36 1 -4.4110 6.0621 -4.0763 37 1 -5.0471 7.0939 -1.1838 38 1 -5.7854 7.7309 -2.7494 39 1 -6.7217 5.4256 -3.2457 40 1 -5.9835 4.7880 -1.6807 41 1 2.9678 3.1884 -2.7137 42 1 2.8624 3.9471 -1.0896 43 1 4.9161 2.6973 -0.9029 44 1 4.2815 1.3487 -1.8947 45 1 7.1417 0.8868 -0.3466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087606094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:56 Heat of formation + Delta-G solvation = 17.696092 kcal Electronic energy + Delta-G solvation = -26806.789486 eV Core-core repulsion = 23019.785304 eV Total energy + Delta-G solvation = -3787.004182 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.59090 -41.12879 -39.29984 -38.23415 -36.19877 -35.57724 -34.37947 -33.58018 -31.79360 -30.57695 -28.20425 -26.68313 -25.65668 -24.54850 -23.66124 -23.27789 -22.36486 -21.80543 -21.69924 -21.33724 -19.24043 -18.77779 -18.17073 -17.89500 -17.53136 -16.74296 -16.12092 -15.99437 -15.78481 -15.71605 -15.60271 -15.32328 -14.84818 -14.42934 -14.33833 -13.82019 -13.55383 -13.33950 -13.26011 -12.87850 -12.77155 -12.73592 -12.65677 -12.43088 -12.25327 -12.19128 -12.05125 -11.97714 -11.90312 -11.86646 -11.58026 -11.55173 -11.39930 -11.29300 -10.67365 -10.28894 -9.88337 -8.82517 -7.84728 -5.22660 -0.36647 0.91332 1.19694 1.48763 1.49859 1.58244 1.92605 2.23034 2.52224 2.74023 2.94044 3.35074 3.40281 3.58933 3.69843 3.79601 3.80237 3.85874 3.95691 3.99281 4.15909 4.35001 4.38869 4.40687 4.54829 4.59845 4.62600 4.73033 4.78250 4.79687 4.89220 4.98322 5.00454 5.07734 5.13676 5.19739 5.24664 5.25772 5.43171 5.49310 5.56307 5.62697 5.72756 6.22018 6.23930 6.44324 6.92741 7.09761 7.77226 8.43878 9.26636 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.002564 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.235097 B =10916.112401 C =11077.098676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.159 3.841 4 H 0.060 0.940 5 C 0.158 3.842 6 H 0.083 0.917 7 N -0.677 5.677 8 C 0.605 3.395 9 O -0.569 6.569 10 C -0.125 4.125 11 C 0.050 3.950 12 N -0.501 5.501 13 C 0.249 3.751 14 C -0.112 4.112 15 C -0.132 4.132 16 C -0.141 4.141 17 O -0.189 6.189 18 C -0.143 4.143 19 C 0.182 3.818 20 N -0.612 5.612 21 C -0.230 4.230 22 H 0.085 0.915 23 C -0.063 4.063 24 N -0.950 5.950 25 Si 0.974 3.026 26 H -0.289 1.289 27 H -0.298 1.298 28 H -0.265 1.265 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.229 0.771 36 H 0.152 0.848 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.043 0.957 44 H -0.005 1.005 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.472 10.593 -1.338 26.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.078 0.922 5 C 0.053 3.947 6 H 0.102 0.898 7 N -0.329 5.329 8 C 0.392 3.608 9 O -0.449 6.449 10 C -0.180 4.180 11 C -0.093 4.093 12 N -0.229 5.229 13 C 0.045 3.955 14 C -0.132 4.132 15 C -0.169 4.169 16 C -0.179 4.179 17 O -0.075 6.075 18 C -0.183 4.183 19 C 0.056 3.944 20 N -0.336 5.336 21 C -0.359 4.359 22 H 0.102 0.898 23 C -0.257 4.257 24 N -0.598 5.598 25 Si 0.803 3.197 26 H -0.217 1.217 27 H -0.225 1.225 28 H -0.190 1.190 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.257 0.743 35 H 0.245 0.755 36 H 0.170 0.830 37 H 0.119 0.881 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.061 0.939 44 H 0.013 0.987 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -24.430 10.565 -1.698 26.670 hybrid contribution 1.842 -1.018 0.157 2.110 sum -22.588 9.547 -1.540 24.571 Atomic orbital electron populations 1.21674 0.94018 1.02035 1.01640 1.21914 0.96273 0.97656 1.00787 1.21257 0.84581 0.94559 0.94337 0.92216 1.21802 0.83045 0.91824 0.98034 0.89848 1.45330 1.25159 1.51104 1.11281 1.16413 0.80652 0.79191 0.84570 1.90856 1.74084 1.54324 1.25663 1.22502 0.96926 1.09607 0.88996 1.24252 0.92430 0.93295 0.99319 1.70369 1.15673 1.22843 1.14053 1.26336 0.91431 0.90166 0.87518 1.20569 0.85406 1.06951 1.00234 1.23238 0.98680 0.93672 1.01283 1.23277 0.92255 0.98846 1.03539 1.84454 1.31129 1.52614 1.39285 1.23276 0.95277 0.98920 1.00815 1.21142 0.93816 0.92336 0.87119 1.44660 1.00417 1.68422 1.20139 1.19304 0.90254 1.34581 0.91723 0.89757 1.25707 0.98659 1.02053 0.99249 1.70134 1.10344 1.54485 1.24847 0.85145 0.77646 0.77756 0.79187 1.21659 1.22490 1.18984 0.92285 0.91168 0.93679 0.94590 0.92860 0.74332 0.75461 0.83034 0.88103 0.84698 0.84702 0.88863 0.91400 0.90245 0.93857 0.98730 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.58 71.98 0.69 -2.91 16 2 C -0.13 -4.46 5.41 30.60 0.17 -4.29 16 3 C 0.16 5.88 2.94 45.34 0.13 6.02 16 4 H 0.06 1.98 7.72 -2.38 -0.02 1.96 16 5 C 0.16 5.37 2.02 46.17 0.09 5.47 16 6 H 0.08 3.19 7.18 -2.39 -0.02 3.17 16 7 N -0.68 -17.74 4.90 -440.85 -2.16 -19.90 16 8 C 0.61 18.30 7.79 86.46 0.67 18.97 16 9 O -0.57 -22.37 16.75 -0.59 -0.01 -22.38 16 10 C -0.12 -3.25 7.22 24.04 0.17 -3.07 16 11 C 0.05 1.00 11.37 83.97 0.95 1.96 16 12 N -0.50 -10.74 10.79 -302.89 -3.27 -14.01 16 13 C 0.25 5.34 7.86 88.29 0.69 6.03 16 14 C -0.11 -1.46 6.33 -11.54 -0.07 -1.53 16 15 C -0.13 -1.13 10.13 30.61 0.31 -0.82 16 16 C -0.14 -1.23 10.24 30.61 0.31 -0.91 16 17 O -0.19 -5.18 10.79 -3.38 -0.04 -5.22 16 18 C -0.14 -5.41 6.77 31.98 0.22 -5.20 16 19 C 0.18 8.85 5.41 86.85 0.47 9.32 16 20 N -0.61 -29.52 3.13 -668.27 -2.09 -31.61 16 21 C -0.23 -12.15 9.75 84.03 0.82 -11.33 16 22 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 23 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 24 N -0.95 -56.33 10.57 21.65 0.23 -56.10 16 25 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 29 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.23 7.40 -2.39 -0.02 1.21 16 32 H 0.04 1.41 8.07 -2.39 -0.02 1.39 16 33 H 0.05 2.00 7.90 -2.39 -0.02 1.99 16 34 H 0.42 7.97 7.27 -92.71 -0.67 7.30 16 35 H 0.23 2.66 7.44 -2.91 -0.02 2.63 16 36 H 0.15 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.10 1.15 7.87 -2.39 -0.02 1.14 16 38 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 43 H 0.04 2.36 6.93 -2.38 -0.02 2.35 16 44 H -0.01 -0.29 8.06 -2.38 -0.02 -0.31 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -73.20 373.21 1.12 -72.09 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.33 Total: 15.78 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: 6.10 Total: 14.65 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -7.29 Total: -121.63 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.20 1.12 -72.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087606094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.782 kcal (2) G-P(sol) polarization free energy of solvation -73.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds