Wall clock time and date at job start Tue Mar 31 2020 13:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47098 * 2 1 4 4 H 1.08992 * 110.00342 * 305.20477 * 3 2 1 5 5 C 1.54335 * 109.99074 * 184.16690 * 3 2 1 6 6 H 1.09003 * 110.51541 * 336.98040 * 5 3 2 7 7 N 1.46498 * 110.84943 * 100.19658 * 5 3 2 8 8 C 1.34779 * 120.00318 * 200.14783 * 7 5 3 9 9 O 1.21584 * 119.99559 * 0.02562 * 8 7 5 10 10 C 1.47617 * 120.00039 * 180.02562 * 8 7 5 11 11 C 1.39556 * 120.50011 * 354.13489 * 10 8 7 12 12 N 1.31634 * 120.62874 * 180.02562 * 11 10 8 13 13 C 1.32440 * 121.79742 * 359.97438 * 12 11 10 14 14 O 1.35496 * 119.52601 * 180.02562 * 13 12 11 15 15 C 1.39123 * 120.95028 * 0.02562 * 13 12 11 16 16 C 1.37998 * 119.26427 * 359.71663 * 15 13 12 17 17 C 1.50703 * 120.82423 * 180.27273 * 16 15 13 18 18 C 1.55153 * 103.02214 * 218.66838 * 5 3 2 19 19 C 1.54910 * 101.58216 * 35.30883 * 18 5 3 20 20 N 1.47024 * 109.88253 * 66.30586 * 3 2 1 21 21 C 1.36934 * 125.64520 * 298.39211 * 20 3 2 22 22 H 1.08001 * 120.00377 * 333.49499 * 21 20 3 23 23 C 1.38809 * 120.00236 * 153.49711 * 21 20 3 24 24 N 1.31617 * 120.00015 * 333.83500 * 23 21 20 25 25 Si 1.86807 * 120.00249 * 153.82645 * 23 21 20 26 26 H 1.48504 * 109.46999 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47217 * 240.00493 * 25 23 21 28 28 H 1.48496 * 109.46801 * 120.00310 * 25 23 21 29 29 H 1.09001 * 109.47131 * 49.12141 * 1 2 3 30 30 H 1.08999 * 109.47193 * 169.12677 * 1 2 3 31 31 H 1.09004 * 109.46874 * 289.12885 * 1 2 3 32 32 H 1.08999 * 109.47071 * 239.99933 * 2 1 3 33 33 H 1.09002 * 109.47172 * 120.00402 * 2 1 3 34 34 H 0.97002 * 120.00170 * 20.15426 * 7 5 3 35 35 H 1.08001 * 119.68545 * 359.97438 * 11 10 8 36 36 H 0.96699 * 114.00576 * 90.00278 * 14 13 12 37 37 H 1.07997 * 120.36886 * 180.02562 * 15 13 12 38 38 H 1.08993 * 109.47186 * 264.58729 * 17 16 15 39 39 H 1.09000 * 109.46777 * 24.59221 * 17 16 15 40 40 H 1.08994 * 109.47114 * 144.58408 * 17 16 15 41 41 H 1.09002 * 111.00477 * 277.23176 * 18 5 3 42 42 H 1.09003 * 111.00586 * 153.38003 * 18 5 3 43 43 H 1.09007 * 110.36403 * 204.15345 * 19 18 5 44 44 H 1.08995 * 110.45955 * 81.88051 * 19 18 5 45 45 H 0.96997 * 119.99745 * 353.57850 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6076 1.9908 -0.8368 5 6 3.5797 1.4578 -0.1054 6 1 3.9958 0.5126 0.2433 7 7 4.0055 1.7378 -1.4788 8 6 5.2483 1.4047 -1.8803 9 8 6.0157 0.8713 -1.1027 10 6 5.6775 1.6874 -3.2641 11 6 4.7698 2.1865 -4.1993 12 7 5.1497 2.4390 -5.4341 13 6 6.3944 2.2335 -5.8371 14 8 6.7355 2.5099 -7.1189 15 6 7.3568 1.7378 -4.9632 16 6 7.0050 1.4637 -3.6573 17 6 8.0207 0.9316 -2.6794 18 6 3.9834 2.6182 0.8420 19 6 2.9223 2.4880 1.9631 20 7 1.6828 2.0991 1.2661 21 6 0.4098 2.3093 1.7246 22 1 -0.4090 2.3937 1.0255 23 6 0.1716 2.4139 3.0881 24 7 0.9827 1.8300 3.9446 25 14 -1.3000 3.3835 3.7076 26 1 -2.0497 3.9377 2.5518 27 1 -0.8313 4.4954 4.5733 28 1 -2.1890 2.4878 4.4902 29 1 -0.3633 0.6726 -0.7770 30 1 -0.3633 -1.0092 -0.1939 31 1 -0.3633 0.3368 0.9710 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3932 2.1632 -2.0993 35 1 3.7456 2.3664 -3.9074 36 1 7.0467 3.4151 -7.2568 37 1 8.3692 1.5742 -5.3017 38 1 7.9533 -0.1556 -2.6411 39 1 9.0210 1.2226 -3.0001 40 1 7.8225 1.3430 -1.6897 41 1 3.9025 3.5809 0.3373 42 1 4.9886 2.4689 1.2364 43 1 2.7881 3.4430 2.4712 44 1 3.2142 1.7174 2.6764 45 1 1.6914 1.2506 3.6237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087720373.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:53 Heat of formation + Delta-G solvation = -20.969044 kcal Electronic energy + Delta-G solvation = -27149.321409 eV Core-core repulsion = 23360.640581 eV Total energy + Delta-G solvation = -3788.680828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16063 -39.63712 -38.09239 -37.22382 -34.71959 -33.82677 -32.63277 -32.18485 -30.75491 -28.71175 -28.13206 -26.84937 -24.81485 -24.18457 -22.64734 -21.88116 -21.12872 -20.33784 -19.65475 -18.78224 -17.90435 -17.37813 -17.29219 -16.20003 -15.98535 -15.28956 -15.05573 -14.50823 -14.41599 -14.07223 -13.69535 -13.57854 -13.27178 -13.12421 -13.04195 -12.91768 -12.85784 -12.60691 -12.43563 -12.15153 -11.98189 -11.67071 -11.12693 -10.94224 -10.75944 -10.52104 -10.31062 -10.16442 -10.12294 -10.06131 -9.91743 -9.88274 -9.53959 -9.47236 -9.35790 -8.81517 -8.40513 -6.93441 -6.07969 -3.24580 0.23096 0.80150 2.60611 3.07731 3.17397 3.48901 3.49471 3.51907 3.64800 4.15082 4.33011 4.43671 4.54980 4.69308 4.84745 5.06478 5.11541 5.27783 5.28823 5.32873 5.39686 5.41781 5.51403 5.65161 5.72765 5.89220 5.93824 5.96943 6.02374 6.12020 6.17163 6.26185 6.35450 6.45543 6.54791 6.63262 6.74358 6.91115 7.01074 7.02718 7.07311 7.29037 7.44030 7.50839 7.85974 8.17094 8.47725 8.99295 9.76867 10.35216 11.19742 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023189 B = 0.002912 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.202225 B = 9614.439217 C = 9995.167133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.095 0.905 7 N -0.709 5.709 8 C 0.563 3.437 9 O -0.530 6.530 10 C -0.200 4.200 11 C 0.166 3.834 12 N -0.511 5.511 13 C 0.333 3.667 14 O -0.481 6.481 15 C -0.199 4.199 16 C 0.034 3.966 17 C -0.125 4.125 18 C -0.143 4.143 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.326 4.326 22 H 0.063 0.937 23 C -0.023 4.023 24 N -0.912 5.912 25 Si 1.067 2.933 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.294 1.294 29 H 0.039 0.961 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.397 0.603 35 H 0.165 0.835 36 H 0.404 0.596 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.030 0.970 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.258 1.234 -17.004 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.031 3.969 6 H 0.113 0.887 7 N -0.359 5.359 8 C 0.350 3.650 9 O -0.408 6.408 10 C -0.206 4.206 11 C 0.007 3.993 12 N -0.230 5.230 13 C 0.155 3.845 14 O -0.289 6.289 15 C -0.220 4.220 16 C 0.026 3.974 17 C -0.180 4.180 18 C -0.183 4.183 19 C 0.018 3.982 20 N -0.315 5.315 21 C -0.454 4.454 22 H 0.081 0.919 23 C -0.226 4.226 24 N -0.552 5.552 25 Si 0.897 3.103 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.222 1.222 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.233 0.767 35 H 0.182 0.818 36 H 0.263 0.737 37 H 0.165 0.835 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.216 1.189 -15.784 19.400 hybrid contribution 1.087 -0.267 -1.289 1.708 sum 12.303 0.921 -17.074 21.065 Atomic orbital electron populations 1.21845 0.95588 0.98729 1.04159 1.21890 0.97112 0.97556 0.99709 1.21216 0.89544 0.92409 0.91974 0.94541 1.22144 0.95865 0.99225 0.79637 0.88718 1.45999 1.13900 1.61682 1.14312 1.17839 0.82194 0.78809 0.86200 1.90739 1.52079 1.42936 1.55055 1.20966 0.95641 1.07733 0.96213 1.22760 0.99315 0.90665 0.86561 1.67173 1.18570 1.19437 1.17805 1.19371 0.87876 0.93024 0.84198 1.84714 1.85762 1.35901 1.22553 1.21992 1.01364 1.05798 0.92826 1.20394 0.93435 0.89715 0.93825 1.21141 0.95169 1.02216 0.99525 1.23188 0.99438 0.97715 0.97948 1.21541 0.85271 0.98662 0.92771 1.44524 1.01948 1.65563 1.19464 1.19639 0.83884 1.49359 0.92554 0.91888 1.25819 1.03797 1.00508 0.92469 1.70700 1.19861 1.27904 1.36689 0.83502 0.75151 0.76398 0.75223 1.21769 1.21717 1.22167 0.94178 0.95206 0.89278 0.94264 0.92515 0.76747 0.81784 0.73723 0.83548 0.89677 0.91727 0.87789 0.91590 0.91492 0.93137 0.95236 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.91 37.16 0.33 -2.46 16 2 C -0.12 -2.31 5.46 -26.73 -0.15 -2.45 16 3 C 0.16 2.97 2.99 -66.95 -0.20 2.77 16 4 H 0.04 0.68 7.66 -51.93 -0.40 0.29 16 5 C 0.14 2.29 2.76 -66.09 -0.18 2.10 16 6 H 0.09 1.73 7.40 -51.93 -0.38 1.35 16 7 N -0.71 -9.58 5.16 -53.04 -0.27 -9.86 16 8 C 0.56 7.78 7.71 -12.43 -0.10 7.68 16 9 O -0.53 -8.67 13.21 5.29 0.07 -8.60 16 10 C -0.20 -2.33 5.89 -104.82 -0.62 -2.94 16 11 C 0.17 1.77 10.69 -17.15 -0.18 1.59 16 12 N -0.51 -5.90 10.37 -12.97 -0.13 -6.03 16 13 C 0.33 3.37 7.74 -16.96 -0.13 3.24 16 14 O -0.48 -3.96 13.55 -18.18 -0.25 -4.21 16 15 C -0.20 -1.79 9.70 -39.34 -0.38 -2.18 16 16 C 0.03 0.36 5.95 -103.95 -0.62 -0.25 16 17 C -0.12 -1.22 8.86 36.01 0.32 -0.90 16 18 C -0.14 -2.56 6.77 -24.58 -0.17 -2.72 16 19 C 0.14 3.18 5.60 -2.53 -0.01 3.16 16 20 N -0.59 -13.71 2.91 -162.57 -0.47 -14.18 16 21 C -0.33 -8.46 7.25 -15.06 -0.11 -8.57 16 22 H 0.06 1.65 7.30 -52.49 -0.38 1.26 16 23 C -0.02 -0.62 5.16 -17.43 -0.09 -0.71 16 24 N -0.91 -26.47 13.05 55.49 0.72 -25.75 16 25 Si 1.07 24.59 29.99 -169.99 -5.10 19.49 16 26 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 2.01 5.75 -51.93 -0.30 1.71 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.40 4.45 6.41 -40.82 -0.26 4.19 16 35 H 0.17 1.38 6.45 -52.49 -0.34 1.04 16 36 H 0.40 1.20 9.06 45.56 0.41 1.61 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 40 H 0.10 1.24 5.91 -51.93 -0.31 0.94 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.21 8.14 -51.92 -0.42 0.79 16 44 H 0.03 0.71 6.77 -51.93 -0.35 0.36 16 45 H 0.27 7.91 6.31 -40.82 -0.26 7.65 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -32.16 361.23 -7.86 -40.02 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.58 Total: 6.31 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.64 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.16 Total: -55.82 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.18 Total: -12.81 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.10 Total: 19.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.16 -7.86 -40.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087720373.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.054 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds