Wall clock time and date at job start Tue Mar 31 2020 13:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21513 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.48157 * 119.99904 * 180.02562 * 8 7 5 11 11 C 1.39172 * 119.69145 * 180.02562 * 10 8 7 12 12 C 1.38738 * 119.18444 * 180.02562 * 11 10 8 13 13 C 1.38371 * 118.56226 * 359.97438 * 12 11 10 14 14 C 1.39243 * 119.30606 * 0.02562 * 13 12 11 15 15 O 1.35666 * 119.61678 * 179.97438 * 14 13 12 16 16 C 1.42900 * 117.00099 * 180.02562 * 15 14 13 17 17 N 1.31930 * 120.76593 * 359.72464 * 14 13 12 18 18 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 19 19 C 1.54910 * 101.58094 * 35.30826 * 18 5 3 20 20 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 21 21 C 1.36929 * 125.64715 * 298.39367 * 20 3 2 22 22 H 1.07995 * 120.00262 * 333.70687 * 21 20 3 23 23 C 1.38817 * 119.99616 * 153.71303 * 21 20 3 24 24 N 1.31623 * 119.99847 * 334.82944 * 23 21 20 25 25 Si 1.86801 * 120.00106 * 154.83543 * 23 21 20 26 26 H 1.48500 * 109.46938 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47159 * 239.99924 * 25 23 21 28 28 H 1.48497 * 109.47066 * 119.99285 * 25 23 21 29 29 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 30 30 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 31 31 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 32 32 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 33 33 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 34 34 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 35 35 H 1.07996 * 120.40393 * 0.02668 * 11 10 8 36 36 H 1.08004 * 120.71665 * 180.02562 * 12 11 10 37 37 H 1.08003 * 120.34458 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47127 * 180.02562 * 16 15 14 39 39 H 1.09004 * 109.46712 * 300.00153 * 16 15 14 40 40 H 1.08996 * 109.46971 * 60.00221 * 16 15 14 41 41 H 1.09000 * 111.00497 * 277.23103 * 18 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 18 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 19 18 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 19 18 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0258 0.8680 -1.0631 10 6 5.7102 1.6775 -3.2349 11 6 6.9986 1.3290 -3.6292 12 6 7.4037 1.5957 -4.9291 13 6 6.5062 2.2014 -5.7906 14 6 5.2319 2.5239 -5.3311 15 8 4.3471 3.1184 -6.1703 16 6 3.0560 3.4252 -5.6404 17 7 4.8734 2.2535 -4.0906 18 6 3.9754 2.6210 0.8567 19 6 2.9035 2.4946 1.9679 20 7 1.6707 2.1033 1.2604 21 6 0.3933 2.3150 1.7059 22 1 -0.4192 2.3937 0.9989 23 6 0.1428 2.4287 3.0666 24 7 0.9579 1.8681 3.9349 25 14 -1.3511 3.3769 3.6653 26 1 -2.1014 3.9067 2.4984 27 1 -0.9097 4.5057 4.5233 28 1 -2.2296 2.4726 4.4499 29 1 -0.3633 0.6357 -0.8074 30 1 -0.3634 -1.0171 -0.1468 31 1 -0.3633 0.3815 0.9543 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.4132 2.1561 -2.0887 35 1 7.6747 0.8568 -2.9319 36 1 8.3978 1.3353 -5.2615 37 1 6.7911 2.4218 -6.8088 38 1 2.4484 3.8958 -6.4134 39 1 2.5723 2.5068 -5.3074 40 1 3.1622 4.1065 -4.7963 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087781213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:20 Heat of formation + Delta-G solvation = -14.759655 kcal Electronic energy + Delta-G solvation = -27243.630160 eV Core-core repulsion = 23455.218591 eV Total energy + Delta-G solvation = -3788.411569 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09197 -39.64956 -38.26115 -37.54118 -34.34536 -33.02299 -32.54344 -31.82483 -31.06836 -28.65820 -27.65848 -26.94871 -25.04788 -24.03545 -23.17434 -21.89087 -21.12133 -20.24717 -19.70792 -18.56896 -17.89603 -17.32556 -16.35028 -16.32471 -16.15065 -16.02500 -14.96444 -14.70082 -14.46358 -14.25522 -13.99382 -13.66943 -13.50857 -13.47456 -13.07193 -12.89172 -12.55563 -12.40778 -12.12746 -12.04072 -11.64668 -11.44882 -11.08450 -10.92987 -10.77192 -10.58081 -10.44933 -10.31446 -10.21845 -10.11512 -10.07750 -9.85946 -9.71931 -9.43241 -8.92493 -8.70938 -8.39205 -6.90657 -6.05216 -3.22135 0.39405 0.93968 2.67022 2.74523 3.10103 3.50185 3.53171 3.64144 3.65783 3.83424 4.53207 4.58599 4.68139 4.69564 4.94698 5.04142 5.09387 5.10416 5.18476 5.32637 5.34816 5.42232 5.43808 5.61055 5.69604 5.80048 5.93485 5.97518 5.99091 6.06659 6.16028 6.28512 6.38974 6.49596 6.57954 6.66440 6.76738 6.85850 6.94715 7.04518 7.10471 7.30306 7.33523 7.67186 7.87723 8.23375 8.49715 9.01962 9.79310 10.38006 11.22553 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.003210 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.439348 B = 8719.424436 C = 9352.836819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.037 0.963 5 C 0.132 3.868 6 H 0.094 0.906 7 N -0.692 5.692 8 C 0.567 3.433 9 O -0.531 6.531 10 C 0.125 3.875 11 C -0.149 4.149 12 C -0.048 4.048 13 C -0.170 4.170 14 C 0.320 3.680 15 O -0.307 6.307 16 C 0.037 3.963 17 N -0.517 5.517 18 C -0.144 4.144 19 C 0.144 3.856 20 N -0.590 5.590 21 C -0.325 4.325 22 H 0.064 0.936 23 C -0.024 4.024 24 N -0.914 5.914 25 Si 1.069 2.931 26 H -0.292 1.292 27 H -0.291 1.291 28 H -0.294 1.294 29 H 0.038 0.962 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.407 0.593 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.774 0.782 -19.840 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.055 0.945 5 C 0.028 3.972 6 H 0.112 0.888 7 N -0.342 5.342 8 C 0.351 3.649 9 O -0.408 6.408 10 C -0.012 4.012 11 C -0.171 4.171 12 C -0.073 4.073 13 C -0.191 4.191 14 C 0.139 3.861 15 O -0.214 6.214 16 C -0.058 4.058 17 N -0.244 5.244 18 C -0.183 4.183 19 C 0.018 3.982 20 N -0.316 5.316 21 C -0.453 4.453 22 H 0.081 0.919 23 C -0.227 4.227 24 N -0.554 5.554 25 Si 0.899 3.101 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.222 1.222 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.243 0.757 35 H 0.169 0.831 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.561 1.277 -17.841 19.830 hybrid contribution 1.068 -0.612 -1.867 2.236 sum 9.629 0.665 -19.708 21.945 Atomic orbital electron populations 1.21886 0.95600 0.98848 1.04207 1.21884 0.97131 0.97558 0.99671 1.21185 0.89469 0.92381 0.91959 0.94532 1.22187 0.95827 0.99248 0.79951 0.88769 1.45912 1.13716 1.60444 1.14128 1.17831 0.82548 0.79059 0.85464 1.90792 1.53743 1.43235 1.52981 1.20913 0.91060 0.95889 0.93312 1.22016 0.96488 1.01324 0.97262 1.21453 0.99583 0.94012 0.92251 1.21286 0.91796 1.03651 1.02378 1.19771 0.88762 0.90960 0.86651 1.86240 1.24592 1.73526 1.37061 1.22940 0.80874 1.01556 1.00479 1.67167 1.37256 1.16710 1.03225 1.23196 0.99481 0.97695 0.97952 1.21549 0.85265 0.98653 0.92730 1.44519 1.01928 1.65374 1.19750 1.19648 0.83754 1.49250 0.92669 0.91870 1.25829 1.03959 1.00551 0.92331 1.70697 1.19054 1.29176 1.36431 0.83477 0.75078 0.76393 0.75179 1.21807 1.21727 1.22156 0.94315 0.95219 0.88937 0.94321 0.92512 0.75656 0.83053 0.83286 0.83619 0.88385 0.91948 0.91933 0.91595 0.91446 0.93089 0.95180 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.98 37.16 0.33 -2.58 16 2 C -0.12 -2.40 5.47 -26.73 -0.15 -2.54 16 3 C 0.16 3.16 3.00 -66.94 -0.20 2.96 16 4 H 0.04 0.74 7.69 -51.93 -0.40 0.34 16 5 C 0.13 2.41 2.76 -66.09 -0.18 2.22 16 6 H 0.09 1.83 7.40 -51.92 -0.38 1.44 16 7 N -0.69 -10.84 5.20 -52.87 -0.27 -11.12 16 8 C 0.57 8.92 7.81 -12.19 -0.10 8.83 16 9 O -0.53 -9.70 16.05 5.35 0.09 -9.61 16 10 C 0.13 1.65 6.75 -83.02 -0.56 1.09 16 11 C -0.15 -1.59 9.63 -39.05 -0.38 -1.97 16 12 C -0.05 -0.37 10.16 -39.35 -0.40 -0.77 16 13 C -0.17 -1.46 10.05 -39.16 -0.39 -1.85 16 14 C 0.32 3.53 7.49 -17.14 -0.13 3.40 16 15 O -0.31 -3.18 10.48 -18.70 -0.20 -3.38 16 16 C 0.04 0.31 10.38 101.05 1.05 1.36 16 17 N -0.52 -6.44 8.39 -9.87 -0.08 -6.53 16 18 C -0.14 -2.73 6.77 -24.58 -0.17 -2.89 16 19 C 0.14 3.29 5.56 -2.53 -0.01 3.28 16 20 N -0.59 -14.14 2.92 -162.56 -0.47 -14.61 16 21 C -0.33 -8.58 7.22 -15.06 -0.11 -8.69 16 22 H 0.06 1.68 7.24 -52.49 -0.38 1.30 16 23 C -0.02 -0.65 5.18 -17.43 -0.09 -0.74 16 24 N -0.91 -26.85 13.05 55.49 0.72 -26.12 16 25 Si 1.07 24.86 29.99 -169.99 -5.10 19.77 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.04 0.72 8.13 -51.93 -0.42 0.29 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 2.13 5.52 -51.93 -0.29 1.84 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.41 5.87 7.64 -40.82 -0.31 5.56 16 35 H 0.15 1.54 7.63 -52.49 -0.40 1.13 16 36 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 40 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.03 0.74 6.73 -51.93 -0.35 0.40 16 45 H 0.27 8.02 6.20 -40.82 -0.25 7.76 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -31.20 368.07 -7.88 -39.07 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -6.63 Total: 5.89 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.48 Total: 1.09 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.11 Total: -58.38 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.11 Total: -12.99 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.77 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.20 -7.88 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087781213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.313 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds