Wall clock time and date at job start Tue Mar 31 2020 13:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21513 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.48157 * 119.99904 * 180.02562 * 8 7 5 11 11 C 1.39172 * 119.69145 * 180.02562 * 10 8 7 12 12 C 1.38738 * 119.18444 * 180.02562 * 11 10 8 13 13 C 1.38371 * 118.56226 * 359.97438 * 12 11 10 14 14 C 1.39243 * 119.30606 * 0.02562 * 13 12 11 15 15 O 1.35666 * 119.61678 * 179.97438 * 14 13 12 16 16 C 1.42900 * 117.00099 * 180.02562 * 15 14 13 17 17 N 1.31930 * 120.76593 * 359.72464 * 14 13 12 18 18 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 19 19 C 1.54910 * 101.58094 * 35.30826 * 18 5 3 20 20 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 21 21 C 1.36929 * 125.64715 * 298.39367 * 20 3 2 22 22 H 1.07995 * 120.00262 * 333.70687 * 21 20 3 23 23 C 1.38817 * 119.99616 * 153.71303 * 21 20 3 24 24 N 1.31623 * 119.99847 * 334.82944 * 23 21 20 25 25 Si 1.86801 * 120.00106 * 154.83543 * 23 21 20 26 26 H 1.48500 * 109.46938 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47159 * 239.99924 * 25 23 21 28 28 H 1.48497 * 109.47066 * 119.99285 * 25 23 21 29 29 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 30 30 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 31 31 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 32 32 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 33 33 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 34 34 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 35 35 H 1.07996 * 120.40393 * 0.02668 * 11 10 8 36 36 H 1.08004 * 120.71665 * 180.02562 * 12 11 10 37 37 H 1.08003 * 120.34458 * 180.02562 * 13 12 11 38 38 H 1.08999 * 109.47127 * 180.02562 * 16 15 14 39 39 H 1.09004 * 109.46712 * 300.00153 * 16 15 14 40 40 H 1.08996 * 109.46971 * 60.00221 * 16 15 14 41 41 H 1.09000 * 111.00497 * 277.23103 * 18 5 3 42 42 H 1.08995 * 111.00085 * 153.37724 * 18 5 3 43 43 H 1.08998 * 110.36323 * 204.15638 * 19 18 5 44 44 H 1.08998 * 110.37052 * 81.82802 * 19 18 5 45 45 H 0.96994 * 120.00061 * 353.73735 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0258 0.8680 -1.0631 10 6 5.7102 1.6775 -3.2349 11 6 6.9986 1.3290 -3.6292 12 6 7.4037 1.5957 -4.9291 13 6 6.5062 2.2014 -5.7906 14 6 5.2319 2.5239 -5.3311 15 8 4.3471 3.1184 -6.1703 16 6 3.0560 3.4252 -5.6404 17 7 4.8734 2.2535 -4.0906 18 6 3.9754 2.6210 0.8567 19 6 2.9035 2.4946 1.9679 20 7 1.6707 2.1033 1.2604 21 6 0.3933 2.3150 1.7059 22 1 -0.4192 2.3937 0.9989 23 6 0.1428 2.4287 3.0666 24 7 0.9579 1.8681 3.9349 25 14 -1.3511 3.3769 3.6653 26 1 -2.1014 3.9067 2.4984 27 1 -0.9097 4.5057 4.5233 28 1 -2.2296 2.4726 4.4499 29 1 -0.3633 0.6357 -0.8074 30 1 -0.3634 -1.0171 -0.1468 31 1 -0.3633 0.3815 0.9543 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.4132 2.1561 -2.0887 35 1 7.6747 0.8568 -2.9319 36 1 8.3978 1.3353 -5.2615 37 1 6.7911 2.4218 -6.8088 38 1 2.4484 3.8958 -6.4134 39 1 2.5723 2.5068 -5.3074 40 1 3.1622 4.1065 -4.7963 41 1 3.8993 3.5820 0.3479 42 1 4.9767 2.4730 1.2611 43 1 2.7645 3.4512 2.4714 44 1 3.1896 1.7254 2.6852 45 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087781213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:19 Heat of formation + Delta-G solvation = -36.353778 kcal Electronic energy + Delta-G solvation = -27244.566551 eV Core-core repulsion = 23455.218591 eV Total energy + Delta-G solvation = -3789.347960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97680 -40.89522 -39.59857 -38.58845 -35.88691 -34.39164 -33.97160 -33.31311 -31.92916 -30.45511 -28.71183 -28.23557 -26.56310 -25.39447 -23.94110 -23.55910 -22.47643 -21.73790 -21.33333 -19.61420 -19.29961 -18.80446 -17.59288 -17.12334 -17.02794 -17.00292 -16.31196 -16.12947 -15.93803 -15.57865 -15.25159 -15.16398 -14.96093 -14.66352 -14.34641 -14.24154 -14.06014 -13.73671 -13.38308 -13.23603 -12.85957 -12.70741 -12.69832 -12.57082 -12.23456 -12.17859 -11.91255 -11.86536 -11.77735 -11.64449 -11.56800 -11.40132 -11.03732 -10.75152 -10.44852 -10.20160 -9.63725 -8.93912 -8.18542 -5.33372 -0.45354 0.21207 1.59996 1.61052 1.67477 1.82421 1.87352 2.06559 2.66472 2.74689 2.90421 3.25731 3.43553 3.68775 3.72468 3.79381 3.90857 4.01221 4.05600 4.23771 4.24287 4.34744 4.41468 4.43201 4.44371 4.47340 4.53108 4.63539 4.79239 4.82905 4.89691 4.92865 4.95950 5.03088 5.09105 5.11939 5.19861 5.28242 5.32545 5.48683 5.62537 5.83290 6.08119 6.29848 6.38767 6.61753 6.94560 7.01798 7.73919 8.35193 9.07695 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.003210 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.439348 B = 8719.424436 C = 9352.836819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.157 3.843 4 H 0.047 0.953 5 C 0.148 3.852 6 H 0.082 0.918 7 N -0.687 5.687 8 C 0.569 3.431 9 O -0.562 6.562 10 C 0.097 3.903 11 C -0.149 4.149 12 C -0.034 4.034 13 C -0.156 4.156 14 C 0.301 3.699 15 O -0.312 6.312 16 C 0.034 3.966 17 N -0.531 5.531 18 C -0.128 4.128 19 C 0.149 3.851 20 N -0.606 5.606 21 C -0.314 4.314 22 H 0.064 0.936 23 C -0.079 4.079 24 N -0.948 5.948 25 Si 1.115 2.885 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.415 0.585 35 H 0.153 0.847 36 H 0.193 0.807 37 H 0.177 0.823 38 H 0.123 0.877 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.006 0.994 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.563 1.168 -23.316 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.050 3.950 4 H 0.065 0.935 5 C 0.043 3.957 6 H 0.100 0.900 7 N -0.337 5.337 8 C 0.355 3.645 9 O -0.441 6.441 10 C -0.039 4.039 11 C -0.170 4.170 12 C -0.059 4.059 13 C -0.176 4.176 14 C 0.119 3.881 15 O -0.219 6.219 16 C -0.061 4.061 17 N -0.259 5.259 18 C -0.167 4.167 19 C 0.023 3.977 20 N -0.332 5.332 21 C -0.443 4.443 22 H 0.081 0.919 23 C -0.275 4.275 24 N -0.590 5.590 25 Si 0.941 3.059 26 H -0.195 1.195 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.252 0.748 35 H 0.171 0.829 36 H 0.210 0.790 37 H 0.195 0.805 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.045 0.955 44 H 0.024 0.976 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.345 1.667 -21.371 23.384 hybrid contribution 0.884 -0.754 -0.958 1.506 sum 10.229 0.913 -22.329 24.577 Atomic orbital electron populations 1.21759 0.95438 1.00255 1.02395 1.21820 0.97189 0.96999 0.99815 1.21276 0.90845 0.92561 0.90276 0.93502 1.21795 0.94352 0.98256 0.81344 0.89978 1.45732 1.14233 1.60767 1.12959 1.18255 0.81817 0.77932 0.86542 1.90768 1.54430 1.44599 1.54279 1.20545 0.92415 0.98818 0.92129 1.22205 0.95415 1.00712 0.98712 1.21907 1.01116 0.92301 0.90539 1.21745 0.90514 1.01607 1.03775 1.20182 0.89962 0.91586 0.86383 1.86244 1.25066 1.73535 1.37052 1.23060 0.80575 1.01227 1.01211 1.67001 1.37686 1.17172 1.04001 1.23041 0.98380 0.98592 0.96715 1.21385 0.86341 0.96491 0.93479 1.44726 1.01608 1.66181 1.20691 1.19830 0.84711 1.47146 0.92579 0.91878 1.27065 1.05949 1.01426 0.93083 1.70817 1.20142 1.31198 1.36863 0.82852 0.72574 0.75113 0.75408 1.19466 1.21969 1.22144 0.93162 0.93034 0.92690 0.91565 0.94826 0.74760 0.82916 0.79034 0.80531 0.85864 0.92593 0.92741 0.90630 0.90645 0.95517 0.97597 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.98 71.98 0.65 -4.79 16 2 C -0.12 -4.59 5.47 30.59 0.17 -4.42 16 3 C 0.16 6.28 3.00 45.34 0.14 6.41 16 4 H 0.05 1.82 7.69 -2.39 -0.02 1.80 16 5 C 0.15 5.39 2.76 46.18 0.13 5.52 16 6 H 0.08 3.23 7.40 -2.38 -0.02 3.22 16 7 N -0.69 -21.08 5.20 -439.47 -2.28 -23.36 16 8 C 0.57 17.61 7.81 86.88 0.68 18.29 16 9 O -0.56 -20.51 16.05 -3.75 -0.06 -20.57 16 10 C 0.10 2.42 6.75 41.85 0.28 2.70 16 11 C -0.15 -2.84 9.63 22.61 0.22 -2.62 16 12 C -0.03 -0.40 10.16 22.42 0.23 -0.17 16 13 C -0.16 -2.06 10.05 22.54 0.23 -1.84 16 14 C 0.30 5.92 7.49 84.92 0.64 6.56 16 15 O -0.31 -5.77 10.48 -89.83 -0.94 -6.71 16 16 C 0.03 0.53 10.38 113.37 1.18 1.70 16 17 N -0.53 -12.49 8.39 -298.18 -2.50 -14.99 16 18 C -0.13 -4.90 6.77 31.99 0.22 -4.68 16 19 C 0.15 7.11 5.56 86.85 0.48 7.59 16 20 N -0.61 -29.70 2.92 -668.22 -1.95 -31.65 16 21 C -0.31 -16.84 7.22 84.04 0.61 -16.23 16 22 H 0.06 3.35 7.24 -2.91 -0.02 3.33 16 23 C -0.08 -4.43 5.18 84.86 0.44 -3.99 16 24 N -0.95 -57.92 13.05 21.65 0.28 -57.64 16 25 Si 1.11 50.90 29.99 68.60 2.06 52.96 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 2.55 5.52 -2.39 -0.01 2.53 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 11.57 7.64 -92.71 -0.71 10.86 16 35 H 0.15 2.83 7.63 -2.91 -0.02 2.81 16 36 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 40 H 0.05 0.92 8.11 -2.39 -0.02 0.90 16 41 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.01 0.33 6.73 -2.39 -0.02 0.31 16 45 H 0.25 15.94 6.20 -92.71 -0.57 15.37 16 Total: -1.00 -70.17 368.07 1.36 -68.81 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.49 Total: 23.12 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.27 Total: 10.03 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -6.45 Total: -127.64 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.00 Total: -27.28 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.96 kcal Total: -70.17 1.36 -68.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087781213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.458 kcal (2) G-P(sol) polarization free energy of solvation -70.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds