Wall clock time and date at job start Tue Mar 31 2020 13:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47278 * 2 1 4 4 H 1.08994 * 109.99948 * 304.62343 * 3 2 1 5 5 C 1.54332 * 109.99005 * 183.58421 * 3 2 1 6 6 H 1.08992 * 110.52009 * 336.97697 * 5 3 2 7 7 N 1.46498 * 110.85011 * 100.20314 * 5 3 2 8 8 C 1.34771 * 120.00055 * 200.14685 * 7 5 3 9 9 O 1.21554 * 120.00246 * 359.97438 * 8 7 5 10 10 C 1.47833 * 120.00143 * 179.97438 * 8 7 5 11 11 N 1.32857 * 119.78398 * 0.02562 * 10 8 7 12 12 C 1.31378 * 121.69791 * 180.02562 * 11 10 8 13 13 C 1.38761 * 121.06790 * 359.97438 * 12 11 10 14 14 C 1.38309 * 119.44515 * 0.02562 * 13 12 11 15 15 C 1.39341 * 118.43543 * 359.72423 * 14 13 12 16 16 O 1.35654 * 120.54034 * 180.26131 * 15 14 13 17 17 C 1.42902 * 116.99523 * 0.27661 * 16 15 14 18 18 C 1.55157 * 103.01870 * 218.66740 * 5 3 2 19 19 C 1.54903 * 101.58240 * 35.30681 * 18 5 3 20 20 N 1.47024 * 109.87775 * 65.71943 * 3 2 1 21 21 C 1.36931 * 125.64748 * 298.39313 * 20 3 2 22 22 H 1.08000 * 120.00156 * 333.71028 * 21 20 3 23 23 C 1.38810 * 120.00109 * 153.71456 * 21 20 3 24 24 N 1.31625 * 119.99544 * 334.83488 * 23 21 20 25 25 Si 1.86797 * 120.00288 * 154.83946 * 23 21 20 26 26 H 1.48501 * 109.47160 * 59.99892 * 25 23 21 27 27 H 1.48495 * 109.47190 * 299.99575 * 25 23 21 28 28 H 1.48506 * 109.47246 * 179.97438 * 25 23 21 29 29 H 1.08994 * 109.46986 * 291.79469 * 1 2 3 30 30 H 1.09004 * 109.47097 * 51.78906 * 1 2 3 31 31 H 1.08996 * 109.47405 * 171.79113 * 1 2 3 32 32 H 1.09008 * 109.46944 * 240.00143 * 2 1 3 33 33 H 1.08995 * 109.47385 * 120.00222 * 2 1 3 34 34 H 0.96996 * 120.00093 * 20.13881 * 7 5 3 35 35 H 1.07999 * 119.46630 * 179.97438 * 12 11 10 36 36 H 1.07998 * 120.28315 * 179.97438 * 13 12 11 37 37 H 1.07999 * 120.78056 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.47558 * 59.99869 * 17 16 15 39 39 H 1.09007 * 109.46790 * 180.02562 * 17 16 15 40 40 H 1.09006 * 109.47218 * 299.98966 * 17 16 15 41 41 H 1.09007 * 111.00612 * 277.23401 * 18 5 3 42 42 H 1.09004 * 111.00567 * 153.38295 * 18 5 3 43 43 H 1.09002 * 110.37204 * 204.15080 * 19 18 5 44 44 H 1.09011 * 110.36743 * 81.83069 * 19 18 5 45 45 H 0.96996 * 120.00054 * 353.73502 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5806 1.4574 -0.0907 6 1 3.9934 0.5136 0.2652 7 7 4.0196 1.7330 -1.4609 8 6 5.2661 1.3985 -1.8492 9 8 6.0262 0.8686 -1.0625 10 6 5.7090 1.6760 -3.2321 11 7 4.8749 2.2558 -4.0884 12 6 5.2288 2.5192 -5.3258 13 6 6.4967 2.2008 -5.7912 14 6 7.4019 1.5958 -4.9383 15 6 7.0053 1.3313 -3.6290 16 8 7.8605 0.7441 -2.7549 17 6 9.1660 0.4245 -3.2404 18 6 3.9753 2.6211 0.8567 19 6 2.9034 2.4947 1.9678 20 7 1.6706 2.1034 1.2603 21 6 0.3933 2.3150 1.7059 22 1 -0.4193 2.3936 0.9988 23 6 0.1427 2.4287 3.0665 24 7 0.9578 1.8683 3.9348 25 14 -1.3514 3.3768 3.6650 26 1 -2.5844 2.7504 3.1243 27 1 -1.2648 4.7836 3.1976 28 1 -1.3929 3.3496 5.1493 29 1 -0.3633 0.3815 0.9542 30 1 -0.3633 0.6357 -0.8075 31 1 -0.3634 -1.0171 -0.1467 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 3.4132 2.1560 -2.0886 35 1 4.5215 2.9912 -5.9917 36 1 6.7741 2.4227 -6.8111 37 1 8.3945 1.3390 -5.2777 38 1 9.6643 1.3360 -3.5702 39 1 9.7467 -0.0393 -2.4428 40 1 9.0827 -0.2678 -4.0782 41 1 3.8991 3.5821 0.3479 42 1 4.9766 2.4732 1.2611 43 1 2.7643 3.4514 2.4714 44 1 3.1895 1.7255 2.6853 45 1 1.6808 1.3007 3.6249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087807867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:23 Heat of formation + Delta-G solvation = -33.976514 kcal Electronic energy + Delta-G solvation = -27289.701999 eV Core-core repulsion = 23500.457125 eV Total energy + Delta-G solvation = -3789.244874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.98969 -40.70584 -39.31203 -39.12985 -35.75621 -34.32127 -33.84613 -33.13290 -31.86835 -30.41861 -28.66028 -28.26312 -26.55212 -25.42082 -23.86126 -23.53660 -22.42521 -21.66169 -21.27651 -19.46015 -19.25166 -18.70511 -18.16302 -17.38896 -17.01398 -16.47852 -16.06348 -16.03457 -15.75227 -15.50310 -15.29721 -15.12098 -14.89077 -14.66606 -14.52165 -14.33387 -14.04455 -13.69571 -13.44951 -13.36273 -12.84680 -12.65812 -12.51576 -12.46173 -12.41845 -12.19255 -11.90763 -11.85739 -11.74153 -11.57668 -11.38004 -11.29727 -10.84107 -10.65446 -10.42561 -10.10950 -9.51123 -8.92645 -8.17569 -5.32141 -0.37787 0.22005 1.60507 1.68362 1.73127 1.86204 1.99194 2.19689 2.68724 2.81407 3.16106 3.27035 3.46592 3.58966 3.72479 3.75234 3.76523 4.00150 4.07378 4.19095 4.25560 4.28027 4.34502 4.36647 4.41807 4.50248 4.55147 4.65773 4.69526 4.84436 4.90250 4.92389 4.98521 5.00717 5.03882 5.13872 5.21597 5.32080 5.42144 5.54649 5.63810 5.84099 6.20522 6.39326 6.43245 6.80707 6.95891 7.18194 7.75368 8.37055 9.08615 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023286 B = 0.003025 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.148686 B = 9253.816577 C = 9649.602488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.157 3.843 4 H 0.049 0.951 5 C 0.151 3.849 6 H 0.076 0.924 7 N -0.691 5.691 8 C 0.566 3.434 9 O -0.558 6.558 10 C 0.004 3.996 11 N -0.442 5.442 12 C 0.053 3.947 13 C -0.085 4.085 14 C -0.171 4.171 15 C 0.123 3.877 16 O -0.310 6.310 17 C 0.009 3.991 18 C -0.128 4.128 19 C 0.150 3.850 20 N -0.606 5.606 21 C -0.315 4.315 22 H 0.064 0.936 23 C -0.080 4.080 24 N -0.947 5.947 25 Si 1.113 2.887 26 H -0.273 1.273 27 H -0.281 1.281 28 H -0.297 1.297 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.415 0.585 35 H 0.197 0.803 36 H 0.191 0.809 37 H 0.180 0.820 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.027 0.973 44 H 0.005 0.995 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.647 0.174 -25.095 29.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.051 3.949 4 H 0.066 0.934 5 C 0.045 3.955 6 H 0.094 0.906 7 N -0.343 5.343 8 C 0.353 3.647 9 O -0.435 6.435 10 C -0.132 4.132 11 N -0.154 5.154 12 C -0.109 4.109 13 C -0.105 4.105 14 C -0.197 4.197 15 C 0.072 3.928 16 O -0.221 6.221 17 C -0.085 4.085 18 C -0.167 4.167 19 C 0.024 3.976 20 N -0.332 5.332 21 C -0.444 4.444 22 H 0.082 0.918 23 C -0.276 4.276 24 N -0.590 5.590 25 Si 0.938 3.062 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.223 1.223 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.252 0.748 35 H 0.214 0.786 36 H 0.208 0.792 37 H 0.198 0.802 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.023 0.977 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.452 0.491 -22.596 26.301 hybrid contribution 1.500 -0.856 -1.331 2.180 sum 14.952 -0.365 -23.926 28.216 Atomic orbital electron populations 1.21755 0.95317 1.00283 1.02424 1.21812 0.97258 0.96999 0.99701 1.21275 0.90822 0.92567 0.90269 0.93373 1.21711 0.94282 0.97903 0.81599 0.90561 1.45677 1.14250 1.61550 1.12789 1.18138 0.81793 0.78104 0.86691 1.90789 1.54271 1.44194 1.54288 1.20337 0.91022 1.07224 0.94660 1.67550 1.34166 1.08695 1.04962 1.23429 0.97153 0.99202 0.91125 1.22755 0.92509 0.92852 1.02358 1.22187 1.03742 1.02862 0.90894 1.20296 0.89958 0.91811 0.90738 1.86394 1.24988 1.72856 1.37867 1.23521 0.80353 1.01931 1.02683 1.23034 0.98189 0.98704 0.96818 1.21369 0.86373 0.96427 0.93406 1.44716 1.01601 1.66177 1.20691 1.19810 0.84701 1.47240 0.92656 0.91800 1.27119 1.06050 1.01379 0.93038 1.70873 1.20133 1.31179 1.36812 0.82882 0.72754 0.75640 0.74955 1.19874 1.20764 1.22328 0.92682 0.93074 0.92998 0.91657 0.94970 0.74783 0.78597 0.79228 0.80243 0.90486 0.87285 0.90445 0.90658 0.91062 0.95482 0.97718 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 8.98 71.98 0.65 -4.98 16 2 C -0.12 -4.81 5.47 30.59 0.17 -4.65 16 3 C 0.16 6.65 3.00 45.35 0.14 6.79 16 4 H 0.05 1.98 7.69 -2.39 -0.02 1.96 16 5 C 0.15 5.95 2.76 46.18 0.13 6.08 16 6 H 0.08 3.28 7.40 -2.39 -0.02 3.26 16 7 N -0.69 -23.60 5.19 -439.80 -2.28 -25.88 16 8 C 0.57 20.09 7.80 86.78 0.68 20.77 16 9 O -0.56 -23.41 14.87 17.10 0.25 -23.15 16 10 C 0.00 0.11 6.76 41.93 0.28 0.39 16 11 N -0.44 -10.37 9.54 -184.63 -1.76 -12.13 16 12 C 0.05 0.75 11.17 84.89 0.95 1.70 16 13 C -0.09 -0.77 10.10 22.41 0.23 -0.54 16 14 C -0.17 -2.18 9.13 22.55 0.21 -1.98 16 15 C 0.12 2.89 6.71 22.93 0.15 3.04 16 16 O -0.31 -8.00 8.56 -68.70 -0.59 -8.58 16 17 C 0.01 0.12 9.83 113.37 1.11 1.23 16 18 C -0.13 -5.27 6.77 31.98 0.22 -5.06 16 19 C 0.15 7.50 5.56 86.85 0.48 7.98 16 20 N -0.61 -30.87 2.92 -668.25 -1.95 -32.82 16 21 C -0.32 -17.38 7.22 84.03 0.61 -16.77 16 22 H 0.06 3.47 7.24 -2.91 -0.02 3.45 16 23 C -0.08 -4.57 5.17 84.86 0.44 -4.13 16 24 N -0.95 -59.16 13.05 21.65 0.28 -58.88 16 25 Si 1.11 51.65 29.99 68.60 2.06 53.71 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 29 H 0.05 2.63 5.52 -2.39 -0.01 2.61 16 30 H 0.05 1.89 8.13 -2.39 -0.02 1.87 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.41 12.77 7.64 -92.71 -0.71 12.06 16 35 H 0.20 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.19 -0.06 8.06 -2.91 -0.02 -0.09 16 37 H 0.18 0.95 6.46 -2.91 -0.02 0.93 16 38 H 0.08 0.64 7.71 -2.39 -0.02 0.62 16 39 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.08 0.64 7.69 -2.38 -0.02 0.62 16 41 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 42 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 43 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.01 0.27 6.73 -2.38 -0.02 0.26 16 45 H 0.25 16.25 6.20 -92.71 -0.57 15.68 16 Total: -1.00 -78.43 363.39 2.93 -75.50 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.49 Total: 22.38 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.43 Total: 9.87 kcal Atomic # 7 Polarization: -124.01 SS G_CDS: -5.71 Total: -129.72 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.33 Total: -31.74 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.06 Total: 53.71 kcal Total: -78.43 2.93 -75.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087807867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.522 kcal (2) G-P(sol) polarization free energy of solvation -78.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds