Wall clock time and date at job start Tue Mar 31 2020 13:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 H 1.09005 * 109.47360 * 304.99924 * 3 2 1 5 5 C 1.50703 * 109.47354 * 185.00058 * 3 2 1 6 6 H 1.08000 * 119.99880 * 240.00202 * 5 3 2 7 7 C 1.37878 * 120.00187 * 59.99481 * 5 3 2 8 8 N 1.31519 * 119.99884 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00305 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47183 * 60.00453 * 9 7 5 11 11 H 1.48505 * 109.47132 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47213 * 300.00484 * 9 7 5 13 13 N 1.46500 * 109.47453 * 65.00086 * 3 2 1 14 14 C 1.34782 * 119.99968 * 275.00361 * 13 3 2 15 15 O 1.21280 * 119.99834 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00088 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46972 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46972 * 180.02562 * 17 16 14 19 19 O 1.21285 * 119.99771 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.46503 * 120.00355 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.47313 * 180.02562 * 21 20 18 23 23 C 1.38678 * 120.41675 * 270.25293 * 22 21 20 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47009 * 299.99905 * 1 2 3 29 29 H 1.08997 * 109.47224 * 59.99961 * 1 2 3 30 30 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47495 * 240.00184 * 2 1 3 32 32 H 1.09003 * 109.47133 * 119.99613 * 2 1 3 33 33 H 0.96991 * 120.00453 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00028 * 94.99628 * 13 3 2 35 35 H 1.09001 * 109.46626 * 59.99898 * 16 14 13 36 36 H 1.08996 * 109.46931 * 299.99770 * 16 14 13 37 37 H 1.08999 * 109.46996 * 59.99885 * 17 16 14 38 38 H 1.09000 * 109.47113 * 300.00204 * 17 16 14 39 39 H 0.97000 * 119.99935 * 359.97438 * 20 18 17 40 40 H 1.09001 * 109.46632 * 59.99997 * 21 20 18 41 41 H 1.08996 * 109.46728 * 299.99991 * 21 20 18 42 42 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 43 43 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 44 44 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3811 10 1 6.5967 0.1453 -0.2343 11 1 6.3978 0.2168 -2.6504 12 1 6.5004 2.2800 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3394 2.6326 0.4341 16 6 0.0362 3.3377 2.6548 17 6 -1.3826 3.8946 2.5210 18 6 -1.7812 4.5684 3.8086 19 8 -1.0066 4.6006 4.7413 20 7 -2.9981 5.1363 3.9234 21 6 -3.3855 5.7919 5.1750 22 6 -4.7829 6.3403 5.0433 23 6 -4.9903 7.6281 4.5726 24 6 -6.2927 8.0924 4.4729 25 6 -7.3342 7.2602 4.8383 26 7 -7.0998 6.0390 5.2767 27 6 -5.8741 5.5642 5.3845 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9978 35 1 0.7276 4.1530 2.8678 36 1 0.0672 2.6131 3.4684 37 1 -2.0742 3.0795 2.3077 38 1 -1.4132 4.6193 1.7074 39 1 -3.6172 5.1116 3.1771 40 1 -2.6935 6.6068 5.3875 41 1 -3.3550 5.0677 5.9890 42 1 -4.1568 8.2560 4.2947 43 1 -6.4911 9.0917 4.1146 44 1 -8.3518 7.6142 4.7632 45 1 -5.7213 4.5588 5.7481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142330761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:37 Heat of formation + Delta-G solvation = -56.023368 kcal Electronic energy + Delta-G solvation = -25444.363140 eV Core-core repulsion = 21654.162242 eV Total energy + Delta-G solvation = -3790.200898 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78815 -39.82856 -38.83982 -35.60708 -35.10950 -32.98332 -32.65150 -32.30544 -31.80949 -30.76531 -27.60758 -26.82378 -24.76082 -24.07315 -22.91229 -22.34466 -20.73900 -19.94941 -19.25923 -17.81526 -17.50532 -16.94827 -16.71078 -16.29931 -15.93949 -15.60730 -15.22182 -15.04328 -14.72815 -14.28103 -14.19682 -13.77471 -13.63380 -13.56244 -13.41586 -12.90536 -12.71993 -12.58742 -12.07593 -11.87858 -11.80010 -11.48590 -11.23241 -10.98608 -10.95680 -10.79618 -10.45669 -10.31648 -10.17183 -10.06473 -9.93793 -9.61722 -9.50892 -9.37573 -9.04941 -8.94344 -8.48097 -7.79038 -6.11066 -4.20318 0.49967 0.75578 2.52090 2.91108 3.26461 3.31666 3.32974 3.41029 3.45103 3.90779 4.15356 4.19552 4.31533 4.40185 4.45280 4.49984 4.71986 4.90341 5.04215 5.15595 5.19642 5.22154 5.28325 5.35332 5.57978 5.59290 5.73631 5.85126 5.99099 6.02211 6.14404 6.17466 6.40145 6.46750 6.67105 7.05447 7.20198 7.22389 7.38469 7.46353 7.48712 7.63661 7.75388 7.92087 8.03594 8.19982 8.70644 8.79387 9.17124 9.47186 10.94183 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.001914 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.696251 B =14629.356857 C =14949.524558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.708 5.708 14 C 0.500 3.500 15 O -0.555 6.555 16 C -0.127 4.127 17 C -0.121 4.121 18 C 0.516 3.484 19 O -0.540 6.540 20 N -0.733 5.733 21 C 0.165 3.835 22 C -0.160 4.160 23 C -0.056 4.056 24 C -0.174 4.174 25 C 0.104 3.896 26 N -0.486 5.486 27 C 0.118 3.882 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.098 0.902 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.389 0.611 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.403 0.597 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.157 0.843 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.573 13.241 13.829 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.356 5.356 14 C 0.285 3.715 15 O -0.435 6.435 16 C -0.168 4.168 17 C -0.161 4.161 18 C 0.304 3.696 19 O -0.416 6.416 20 N -0.386 5.386 21 C 0.041 3.959 22 C -0.162 4.162 23 C -0.083 4.083 24 C -0.194 4.194 25 C -0.053 4.053 26 N -0.194 5.194 27 C -0.039 4.039 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.237 0.763 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.174 0.826 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.220 12.589 13.872 26.132 hybrid contribution 1.667 0.588 -0.339 1.800 sum -16.552 13.177 13.534 25.115 Atomic orbital electron populations 1.21829 0.98383 0.97962 1.01178 1.21933 0.92609 0.99885 1.02251 1.18769 0.94127 0.89167 0.81131 0.93358 1.21217 0.90811 1.38986 1.06252 0.92142 1.24889 0.98581 0.94835 0.95413 1.69883 1.35189 1.37628 1.09324 0.86517 0.84914 0.78293 0.77417 1.20175 1.21165 1.20215 1.46498 1.14732 1.55817 1.18518 1.20345 0.82809 0.79329 0.89001 1.90656 1.51523 1.60448 1.40885 1.21398 0.96220 1.01800 0.97369 1.21353 0.98329 1.01857 0.94595 1.20969 0.80748 0.77715 0.90199 1.90710 1.51059 1.58813 1.41046 1.46102 1.17341 1.58777 1.16387 1.20067 0.90578 0.97602 0.87613 1.20939 0.96626 0.95780 1.02900 1.21611 0.97666 0.94812 0.94180 1.22209 0.93452 1.01775 1.01954 1.22893 0.99853 0.89323 0.93256 1.67775 1.23741 1.14724 1.13158 1.22806 0.87055 0.99593 0.94458 0.94276 0.93190 0.95937 0.88340 0.95066 0.92543 0.77858 0.88855 0.88901 0.88031 0.88041 0.76267 0.90356 0.90187 0.84480 0.84449 0.82555 0.82494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.52 37.16 0.32 -2.68 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.71 -14.44 5.02 -54.93 -0.28 -14.72 16 14 C 0.50 9.40 6.40 -10.98 -0.07 9.33 16 15 O -0.56 -12.07 13.12 5.56 0.07 -12.00 16 16 C -0.13 -1.80 4.99 -27.88 -0.14 -1.94 16 17 C -0.12 -1.45 4.99 -27.88 -0.14 -1.59 16 18 C 0.52 5.94 7.83 -10.99 -0.09 5.86 16 19 O -0.54 -8.02 15.98 5.55 0.09 -7.93 16 20 N -0.73 -6.12 5.55 -61.47 -0.34 -6.46 16 21 C 0.17 1.23 5.82 -5.19 -0.03 1.20 16 22 C -0.16 -1.06 5.27 -104.48 -0.55 -1.61 16 23 C -0.06 -0.33 9.86 -39.28 -0.39 -0.71 16 24 C -0.17 -0.92 10.11 -39.44 -0.40 -1.32 16 25 C 0.10 0.67 11.18 -17.54 -0.20 0.47 16 26 N -0.49 -4.17 10.36 -13.25 -0.14 -4.31 16 27 C 0.12 0.88 10.86 -17.55 -0.19 0.69 16 28 H 0.04 0.82 5.65 -51.93 -0.29 0.53 16 29 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.39 7.01 8.54 -40.82 -0.35 6.66 16 35 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.09 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 38 H 0.10 1.18 8.10 -51.93 -0.42 0.76 16 39 H 0.40 2.69 8.46 -40.82 -0.35 2.34 16 40 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 44 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -32.84 376.90 -8.57 -41.41 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.70 Total: 8.41 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -2.57 Total: -1.67 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -0.13 Total: -49.50 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.16 Total: -19.92 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.84 -8.57 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142330761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.612 kcal (2) G-P(sol) polarization free energy of solvation -32.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds