Wall clock time and date at job start Tue Mar 31 2020 13:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47015 * 2 1 4 4 H 1.09005 * 109.47360 * 304.99924 * 3 2 1 5 5 C 1.50703 * 109.47354 * 185.00058 * 3 2 1 6 6 H 1.08000 * 119.99880 * 240.00202 * 5 3 2 7 7 C 1.37878 * 120.00187 * 59.99481 * 5 3 2 8 8 N 1.31519 * 119.99884 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00305 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47183 * 60.00453 * 9 7 5 11 11 H 1.48505 * 109.47132 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47213 * 300.00484 * 9 7 5 13 13 N 1.46500 * 109.47453 * 65.00086 * 3 2 1 14 14 C 1.34782 * 119.99968 * 275.00361 * 13 3 2 15 15 O 1.21280 * 119.99834 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00088 * 179.97438 * 14 13 3 17 17 C 1.53000 * 109.46972 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.46972 * 180.02562 * 17 16 14 19 19 O 1.21285 * 119.99771 * 0.02562 * 18 17 16 20 20 N 1.34773 * 120.00157 * 179.97438 * 18 17 16 21 21 C 1.46503 * 120.00355 * 180.02562 * 20 18 17 22 22 C 1.50695 * 109.47313 * 180.02562 * 21 20 18 23 23 C 1.38678 * 120.41675 * 270.25293 * 22 21 20 24 24 C 1.38627 * 118.41930 * 180.24221 * 23 22 21 25 25 C 1.38232 * 119.16085 * 359.75178 * 24 23 22 26 26 N 1.31857 * 120.76541 * 359.97438 * 25 24 23 27 27 C 1.31889 * 121.72235 * 0.02562 * 26 25 24 28 28 H 1.08995 * 109.47009 * 299.99905 * 1 2 3 29 29 H 1.08997 * 109.47224 * 59.99961 * 1 2 3 30 30 H 1.08998 * 109.46846 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47495 * 240.00184 * 2 1 3 32 32 H 1.09003 * 109.47133 * 119.99613 * 2 1 3 33 33 H 0.96991 * 120.00453 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00028 * 94.99628 * 13 3 2 35 35 H 1.09001 * 109.46626 * 59.99898 * 16 14 13 36 36 H 1.08996 * 109.46931 * 299.99770 * 16 14 13 37 37 H 1.08999 * 109.46996 * 59.99885 * 17 16 14 38 38 H 1.09000 * 109.47113 * 300.00204 * 17 16 14 39 39 H 0.97000 * 119.99935 * 359.97438 * 20 18 17 40 40 H 1.09001 * 109.46632 * 59.99997 * 21 20 18 41 41 H 1.08996 * 109.46728 * 299.99991 * 21 20 18 42 42 H 1.07994 * 120.78944 * 359.96926 * 23 22 21 43 43 H 1.07997 * 120.42083 * 179.72800 * 24 23 22 44 44 H 1.07999 * 119.61954 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.61237 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8801 -1.3811 10 1 6.5967 0.1453 -0.2343 11 1 6.3978 0.2168 -2.6504 12 1 6.5004 2.2800 -1.3808 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3670 15 8 -0.3394 2.6326 0.4341 16 6 0.0362 3.3377 2.6548 17 6 -1.3826 3.8946 2.5210 18 6 -1.7812 4.5684 3.8086 19 8 -1.0066 4.6006 4.7413 20 7 -2.9981 5.1363 3.9234 21 6 -3.3855 5.7919 5.1750 22 6 -4.7829 6.3403 5.0433 23 6 -4.9903 7.6281 4.5726 24 6 -6.2927 8.0924 4.4729 25 6 -7.3342 7.2602 4.8383 26 7 -7.0998 6.0390 5.2767 27 6 -5.8741 5.5642 5.3845 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8292 -0.0604 -2.9502 34 1 2.2719 2.1232 1.9978 35 1 0.7276 4.1530 2.8678 36 1 0.0672 2.6131 3.4684 37 1 -2.0742 3.0795 2.3077 38 1 -1.4132 4.6193 1.7074 39 1 -3.6172 5.1116 3.1771 40 1 -2.6935 6.6068 5.3875 41 1 -3.3550 5.0677 5.9890 42 1 -4.1568 8.2560 4.2947 43 1 -6.4911 9.0917 4.1146 44 1 -8.3518 7.6142 4.7632 45 1 -5.7213 4.5588 5.7481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142330761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:36 Heat of formation + Delta-G solvation = -78.891284 kcal Electronic energy + Delta-G solvation = -25445.354767 eV Core-core repulsion = 21654.162242 eV Total energy + Delta-G solvation = -3791.192525 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37057 -40.87686 -40.22001 -36.97396 -36.30665 -34.26880 -33.93821 -33.36904 -32.67177 -32.26316 -29.14050 -27.94867 -25.93625 -24.69902 -24.54289 -22.95036 -22.03364 -21.32290 -20.92706 -19.00618 -18.33263 -17.94320 -17.49398 -17.28393 -17.04567 -16.92873 -16.89330 -16.07186 -15.92581 -15.66302 -14.91860 -14.83482 -14.63624 -14.58421 -14.20532 -14.11938 -13.95579 -13.77964 -13.49806 -13.22478 -13.13503 -13.00706 -12.81404 -12.64223 -12.52155 -12.17485 -12.11730 -11.98529 -11.55136 -11.15862 -11.03408 -10.75960 -10.61755 -10.46985 -10.45561 -10.13272 -10.03839 -9.56612 -8.14478 -6.31364 0.01989 0.29821 1.45441 1.46832 1.54562 1.61259 1.92577 2.12519 2.40014 2.76596 2.93756 3.14678 3.43671 3.67657 3.72719 3.87617 4.00735 4.07024 4.08351 4.18732 4.26981 4.48817 4.52842 4.61145 4.62225 4.70972 4.74852 4.81169 4.84917 4.92480 5.02305 5.10520 5.15673 5.26630 5.29858 5.36579 5.47361 5.59168 5.67163 5.72550 5.83318 5.96382 6.20401 6.46646 6.77113 6.98422 7.05071 7.19032 7.35881 7.64263 8.90397 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.030471 B = 0.001914 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.696251 B =14629.356857 C =14949.524558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.000 1.000 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.015 3.985 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.709 5.709 14 C 0.499 3.501 15 O -0.585 6.585 16 C -0.114 4.114 17 C -0.117 4.117 18 C 0.523 3.477 19 O -0.575 6.575 20 N -0.718 5.718 21 C 0.169 3.831 22 C -0.160 4.160 23 C -0.060 4.060 24 C -0.170 4.170 25 C 0.093 3.907 26 N -0.517 5.517 27 C 0.106 3.894 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.413 0.587 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.164 0.836 44 H 0.177 0.823 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.713 14.391 15.033 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.018 0.982 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.185 4.185 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.467 6.467 16 C -0.154 4.154 17 C -0.157 4.157 18 C 0.311 3.689 19 O -0.454 6.454 20 N -0.370 5.370 21 C 0.045 3.955 22 C -0.162 4.162 23 C -0.086 4.086 24 C -0.189 4.189 25 C -0.064 4.064 26 N -0.226 5.226 27 C -0.052 4.052 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.249 0.751 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.182 0.818 44 H 0.194 0.806 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -18.395 13.761 15.103 27.493 hybrid contribution 1.609 0.297 -0.726 1.790 sum -16.786 14.058 14.377 26.193 Atomic orbital electron populations 1.21668 0.96727 0.99115 1.00448 1.21789 0.94020 0.99210 1.01118 1.18346 0.93440 0.89204 0.81597 0.98188 1.21578 0.91706 1.38867 1.06606 0.91265 1.25752 1.03175 0.94462 0.95104 1.70034 1.37020 1.38356 1.09804 0.85456 0.79334 0.78399 0.77481 1.19121 1.21177 1.19719 1.46312 1.15881 1.56109 1.17493 1.21106 0.81670 0.78420 0.90167 1.90645 1.52223 1.61341 1.42488 1.21306 0.97707 1.01896 0.94499 1.21290 0.97069 1.02170 0.95155 1.20747 0.81240 0.77609 0.89349 1.90702 1.52282 1.60443 1.41990 1.45982 1.16413 1.57486 1.17114 1.20064 0.91093 0.97431 0.86867 1.20806 0.95720 0.96223 1.03499 1.21883 0.98585 0.94576 0.93593 1.22500 0.92819 1.02691 1.00901 1.23332 1.01341 0.88906 0.92802 1.67768 1.24329 1.16061 1.14402 1.22937 0.87175 1.00112 0.94930 0.93432 0.95371 0.93768 0.91146 0.94327 0.92636 0.76326 0.87874 0.87681 0.87564 0.87655 0.75103 0.90306 0.90468 0.82912 0.81822 0.80594 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.52 71.98 0.61 -4.77 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.83 16 3 C 0.28 14.10 2.24 44.25 0.10 14.20 16 4 H 0.00 0.01 7.58 -2.38 -0.02 0.00 16 5 C -0.55 -29.05 8.73 25.60 0.22 -28.83 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.91 -52.12 11.29 21.45 0.24 -51.87 16 9 Si 0.97 42.17 29.54 68.60 2.03 44.19 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 13 N -0.71 -28.73 5.02 -446.08 -2.24 -30.97 16 14 C 0.50 18.48 6.40 87.66 0.56 19.05 16 15 O -0.59 -25.55 13.12 -3.03 -0.04 -25.59 16 16 C -0.11 -3.05 4.99 29.85 0.15 -2.90 16 17 C -0.12 -2.61 4.99 29.85 0.15 -2.47 16 18 C 0.52 11.20 7.83 87.66 0.69 11.89 16 19 O -0.57 -16.25 15.98 -3.05 -0.05 -16.30 16 20 N -0.72 -10.80 5.55 -466.79 -2.59 -13.39 16 21 C 0.17 2.29 5.82 85.63 0.50 2.79 16 22 C -0.16 -1.90 5.27 -19.77 -0.10 -2.01 16 23 C -0.06 -0.57 9.86 22.47 0.22 -0.35 16 24 C -0.17 -1.40 10.11 22.36 0.23 -1.17 16 25 C 0.09 1.05 11.18 84.69 0.95 1.99 16 26 N -0.52 -8.47 10.36 -195.83 -2.03 -10.50 16 27 C 0.11 1.50 10.86 84.67 0.92 2.42 16 28 H 0.05 1.98 5.65 -2.39 -0.01 1.97 16 29 H 0.03 1.32 7.85 -2.39 -0.02 1.31 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.26 14.35 8.31 -92.72 -0.77 13.58 16 34 H 0.40 14.11 8.54 -92.71 -0.79 13.31 16 35 H 0.10 2.62 8.10 -2.39 -0.02 2.61 16 36 H 0.10 2.62 8.10 -2.39 -0.02 2.61 16 37 H 0.11 2.31 8.10 -2.39 -0.02 2.29 16 38 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 39 H 0.41 4.75 8.46 -92.71 -0.78 3.97 16 40 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 41 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 42 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 43 H 0.16 0.43 8.06 -2.91 -0.02 0.40 16 44 H 0.18 1.07 8.06 -2.91 -0.02 1.05 16 45 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -71.55 376.90 0.56 -70.98 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.56 Total: 28.17 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.80 Total: 5.27 kcal Atomic # 7 Polarization: -100.12 SS G_CDS: -6.62 Total: -106.73 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.09 Total: -41.89 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -71.55 0.56 -70.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142330761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.908 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds