Wall clock time and date at job start Tue Mar 31 2020 13:36:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45199 * 109.46784 * 2 1
4 4 C 1.34766 * 116.99549 * 180.02562 * 3 2 1
5 5 O 1.21519 * 120.00490 * 359.97438 * 4 3 2
6 6 C 1.47308 * 119.99869 * 179.97438 * 4 3 2
7 7 C 1.39824 * 120.99647 * 5.19838 * 6 4 3
8 8 N 1.32187 * 118.98772 * 180.25732 * 7 6 4
9 9 C 1.31984 * 121.20186 * 359.73528 * 8 7 6
10 10 C 1.50700 * 118.87448 * 180.02562 * 9 8 7
11 11 C 1.52999 * 117.50281 * 8.72604 * 10 9 8
12 12 C 1.52995 * 117.50003 * 300.06543 * 10 9 8
13 13 N 1.31663 * 122.24299 * 0.02562 * 9 8 7
14 14 C 1.32981 * 120.84988 * 359.97438 * 13 9 8
15 15 N 1.37844 * 120.64485 * 179.97438 * 14 13 9
16 16 C 1.46502 * 119.99884 * 354.57141 * 15 14 13
17 17 H 1.09001 * 109.46737 * 35.00130 * 16 15 14
18 18 C 1.50695 * 109.47212 * 154.99825 * 16 15 14
19 19 H 1.08009 * 119.99730 * 0.02562 * 18 16 15
20 20 C 1.37876 * 120.00326 * 180.02562 * 18 16 15
21 21 N 1.31513 * 119.99530 * 359.97438 * 20 18 16
22 22 Si 1.86803 * 120.00001 * 180.02562 * 20 18 16
23 23 H 1.48493 * 109.47176 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.46930 * 119.99775 * 22 20 18
25 25 H 1.48495 * 109.46775 * 239.99777 * 22 20 18
26 26 C 1.52995 * 109.47178 * 275.00025 * 16 15 14
27 27 C 1.53007 * 109.47251 * 64.99930 * 26 16 15
28 28 H 1.09006 * 109.47296 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47153 * 300.00245 * 1 2 3
30 30 H 1.08994 * 109.47250 * 60.00028 * 1 2 3
31 31 H 1.08990 * 109.47229 * 239.99876 * 2 1 3
32 32 H 1.09002 * 109.47000 * 119.99756 * 2 1 3
33 33 H 1.07996 * 120.50804 * 359.97438 * 7 6 4
34 34 H 1.09006 * 115.54550 * 154.40130 * 10 9 8
35 35 H 1.09001 * 117.49850 * 0.02562 * 11 10 9
36 36 H 1.08999 * 117.49620 * 145.01552 * 11 10 9
37 37 H 1.09009 * 117.50271 * 214.98191 * 12 10 9
38 38 H 1.09000 * 117.49915 * 359.97438 * 12 10 9
39 39 H 0.96995 * 119.99754 * 174.56850 * 15 14 13
40 40 H 0.97000 * 119.99658 * 180.02562 * 21 20 18
41 41 H 1.09002 * 109.46927 * 184.99826 * 26 16 15
42 42 H 1.08998 * 109.47349 * 305.00097 * 26 16 15
43 43 H 1.09003 * 109.46476 * 60.00146 * 27 26 16
44 44 H 1.09002 * 109.46839 * 179.97438 * 27 26 16
45 45 H 1.08992 * 109.47013 * 300.00001 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3500 1.5455 -0.0005
5 8 4.0903 0.5819 -0.0005
6 6 3.9130 2.9068 -0.0011
7 6 3.0852 4.0284 0.1074
8 7 3.6324 5.2317 0.0975
9 6 4.9387 5.3880 -0.0073
10 6 5.5065 6.7839 -0.0126
11 6 4.5525 7.9360 0.3090
12 6 5.0474 7.7291 -1.1246
13 7 5.7626 4.3659 -0.1074
14 6 5.3041 3.1177 -0.1063
15 7 6.1704 2.0508 -0.2119
16 6 7.5973 2.2862 -0.4461
17 1 7.9061 3.1928 0.0745
18 6 8.3914 1.1146 0.0714
19 1 7.8838 0.2780 0.5286
20 6 9.7657 1.1107 -0.0388
21 7 10.3836 2.1292 -0.5960
22 14 10.7499 -0.3420 0.6020
23 1 9.8251 -1.3511 1.1777
24 1 11.5150 -0.9527 -0.5147
25 1 11.6919 0.1228 1.6516
26 6 7.8478 2.4493 -1.9465
27 6 7.1417 3.7110 -2.4473
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 2.0148 3.9136 0.1934
34 1 6.5374 6.8734 0.3302
35 1 3.5141 7.6842 0.5249
36 1 4.9557 8.7835 0.8633
37 1 5.7760 8.4408 -1.5131
38 1 4.3349 7.3412 -1.8526
39 1 5.8353 1.1441 -0.1310
40 1 11.3505 2.1262 -0.6739
41 1 8.9189 2.5358 -2.1288
42 1 7.4580 1.5802 -2.4765
43 1 7.5316 4.5800 -1.9173
44 1 7.3206 3.8273 -3.5163
45 1 6.0706 3.6245 -2.2651
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001161049100.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:51
Heat of formation + Delta-G solvation = -12.463488 kcal
Electronic energy + Delta-G solvation = -27487.215670 eV
Core-core repulsion = 23698.903671 eV
Total energy + Delta-G solvation = -3788.311999 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.00234 -39.81549 -37.44802 -36.45245 -36.09698 -33.41388 -32.57794 -31.79107
-31.36842 -29.98009 -26.92470 -25.77153 -23.73626 -23.33730 -22.72318 -22.22952
-21.62744 -20.67775 -19.82886 -18.05370 -17.56788 -16.75011 -16.51593 -16.40000
-16.32311 -15.33336 -14.94635 -14.74845 -14.24580 -13.99008 -13.87693 -13.80623
-13.41468 -12.97729 -12.87288 -12.62604 -12.05872 -12.00336 -11.83866 -11.72220
-11.45242 -11.32724 -11.23878 -11.08882 -10.94304 -10.75626 -10.59632 -10.55257
-10.39928 -10.26558 -10.20537 -9.95472 -9.66671 -9.23886 -9.03061 -8.72074
-8.47969 -7.41690 -6.16557 -4.25014 0.82822 1.87137 2.69395 2.74468
3.22582 3.30508 3.34976 3.75124 3.84635 4.17561 4.32152 4.41163
4.59195 4.81227 4.82110 4.94778 5.00922 5.09972 5.15309 5.15831
5.17639 5.28053 5.51000 5.63181 5.67324 5.73202 5.75050 5.83094
5.92543 6.21097 6.27912 6.31214 6.32896 6.42356 6.51528 6.66354
6.93592 7.05283 7.25190 7.29455 7.41901 7.63712 7.78246 7.86107
8.05488 8.14426 8.43457 8.70592 8.91858 9.41097 10.88927
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.008497 B = 0.005293 C = 0.003490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3294.638620 B = 5289.030765 C = 8021.699715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.063 3.937
3 O -0.357 6.357
4 C 0.532 3.468
5 O -0.518 6.518
6 C -0.345 4.345
7 C 0.246 3.754
8 N -0.587 5.587
9 C 0.414 3.586
10 C -0.101 4.101
11 C -0.153 4.153
12 C -0.154 4.154
13 N -0.555 5.555
14 C 0.492 3.508
15 N -0.645 5.645
16 C 0.262 3.738
17 H 0.061 0.939
18 C -0.535 4.535
19 H 0.062 0.938
20 C 0.069 3.931
21 N -0.882 5.882
22 Si 0.902 3.098
23 H -0.272 1.272
24 H -0.282 1.282
25 H -0.282 1.282
26 C -0.127 4.127
27 C -0.134 4.134
28 H 0.078 0.922
29 H 0.066 0.934
30 H 0.066 0.934
31 H 0.070 0.930
32 H 0.070 0.930
33 H 0.170 0.830
34 H 0.129 0.871
35 H 0.110 0.890
36 H 0.096 0.904
37 H 0.100 0.900
38 H 0.095 0.905
39 H 0.419 0.581
40 H 0.264 0.736
41 H 0.104 0.896
42 H 0.031 0.969
43 H 0.057 0.943
44 H 0.026 0.974
45 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.183 5.046 -0.073 16.951
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.011 4.011
3 O -0.274 6.274
4 C 0.379 3.621
5 O -0.408 6.408
6 C -0.360 4.360
7 C 0.079 3.921
8 N -0.308 5.308
9 C 0.145 3.855
10 C -0.121 4.121
11 C -0.191 4.191
12 C -0.192 4.192
13 N -0.279 5.279
14 C 0.240 3.760
15 N -0.273 5.273
16 C 0.160 3.840
17 H 0.079 0.921
18 C -0.573 4.573
19 H 0.080 0.920
20 C -0.134 4.134
21 N -0.519 5.519
22 Si 0.729 3.271
23 H -0.197 1.197
24 H -0.208 1.208
25 H -0.208 1.208
26 C -0.166 4.166
27 C -0.192 4.192
28 H 0.096 0.904
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.088 0.912
32 H 0.088 0.912
33 H 0.187 0.813
34 H 0.147 0.853
35 H 0.128 0.872
36 H 0.115 0.885
37 H 0.119 0.881
38 H 0.114 0.886
39 H 0.266 0.734
40 H 0.074 0.926
41 H 0.123 0.877
42 H 0.050 0.950
43 H 0.076 0.924
44 H 0.045 0.955
45 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges -15.095 5.508 -0.165 16.069
hybrid contribution 0.196 -2.316 0.294 2.343
sum -14.898 3.192 0.129 15.237
Atomic orbital electron populations
1.21799 0.92736 1.02836 1.03453 1.22996 0.95093 0.80276 1.02776
1.86512 1.23829 1.32153 1.84865 1.20599 0.80273 0.89058 0.72218
1.90612 1.59395 1.42553 1.48230 1.19906 0.94309 0.92515 1.29226
1.23118 0.99760 0.85969 0.83284 1.68112 1.13390 1.25127 1.24214
1.21971 0.85104 0.93442 0.84934 1.20665 0.99931 0.84763 1.06719
1.23002 1.00387 0.97772 0.97943 1.22936 1.03261 1.00913 0.92095
1.68088 1.38817 0.97211 1.23811 1.18521 0.85796 0.88212 0.83426
1.46487 1.09790 1.06647 1.64392 1.19102 0.73183 0.98609 0.93066
0.92099 1.21251 0.91717 1.04212 1.40143 0.91971 1.24840 0.97401
0.96371 0.94805 1.69888 1.09250 1.29811 1.42961 0.86382 0.79895
0.82194 0.78636 1.19699 1.20790 1.20786 1.21940 1.03406 0.94236
0.96993 1.21807 0.98901 1.00257 0.98223 0.90359 0.91497 0.91499
0.91192 0.91186 0.81338 0.85268 0.87152 0.88523 0.88146 0.88611
0.73428 0.92573 0.87748 0.95040 0.92434 0.95492 0.95456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16
2 C 0.06 0.69 6.20 37.16 0.23 0.92 16
3 O -0.36 -4.92 9.58 -40.67 -0.39 -5.31 16
4 C 0.53 9.10 7.89 34.42 0.27 9.37 16
5 O -0.52 -10.14 13.61 -19.28 -0.26 -10.40 16
6 C -0.34 -6.12 5.92 -104.54 -0.62 -6.74 16
7 C 0.25 3.72 10.89 -16.81 -0.18 3.54 16
8 N -0.59 -9.32 9.30 -10.44 -0.10 -9.42 16
9 C 0.41 7.14 7.31 -157.14 -1.15 5.99 16
10 C -0.10 -1.42 6.23 -91.77 -0.57 -1.99 16
11 C -0.15 -1.69 10.01 -26.70 -0.27 -1.96 16
12 C -0.15 -1.77 10.24 -26.70 -0.27 -2.04 16
13 N -0.56 -11.17 6.94 -9.74 -0.07 -11.24 16
14 C 0.49 10.16 5.86 -154.89 -0.91 9.25 16
15 N -0.64 -14.71 5.02 -54.69 -0.27 -14.98 16
16 C 0.26 6.64 2.25 -69.09 -0.16 6.48 16
17 H 0.06 1.70 7.48 -51.93 -0.39 1.31 16
18 C -0.53 -14.56 8.73 -34.44 -0.30 -14.86 16
19 H 0.06 1.70 7.74 -52.48 -0.41 1.29 16
20 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16
21 N -0.88 -24.33 11.29 55.43 0.63 -23.70 16
22 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16
23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
26 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16
27 C -0.13 -2.88 8.53 37.16 0.32 -2.57 16
28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16
29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16
30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.17 1.96 7.71 -52.49 -0.40 1.56 16
34 H 0.13 1.82 8.14 -51.93 -0.42 1.40 16
35 H 0.11 1.27 7.53 -51.93 -0.39 0.88 16
36 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16
37 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16
38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
39 H 0.42 9.65 5.23 -40.82 -0.21 9.44 16
40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16
41 H 0.10 2.76 5.95 -51.93 -0.31 2.46 16
42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
43 H 0.06 1.25 7.78 -51.93 -0.40 0.85 16
44 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
45 H 0.03 0.58 5.72 -51.93 -0.30 0.28 16
LS Contribution 370.69 15.07 5.59 5.59
Total: -1.00 -29.42 370.69 -9.96 -39.39
By element:
Atomic # 1 Polarization: 17.55 SS G_CDS: -6.60 Total: 10.95 kcal
Atomic # 6 Polarization: 6.64 SS G_CDS: -3.46 Total: 3.18 kcal
Atomic # 7 Polarization: -59.54 SS G_CDS: 0.19 Total: -59.35 kcal
Atomic # 8 Polarization: -15.06 SS G_CDS: -0.65 Total: -15.71 kcal
Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal
Total LS contribution 5.59 Total: 5.59 kcal
Total: -29.42 -9.96 -39.39 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161049100.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.922 kcal
(2) G-P(sol) polarization free energy of solvation -29.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.463 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds