Wall clock time and date at job start Tue Mar 31 2020 13:36:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45199 * 109.46784 * 2 1
4 4 C 1.34766 * 116.99549 * 180.02562 * 3 2 1
5 5 O 1.21519 * 120.00490 * 359.97438 * 4 3 2
6 6 C 1.47308 * 119.99869 * 179.97438 * 4 3 2
7 7 C 1.39824 * 120.99647 * 5.19838 * 6 4 3
8 8 N 1.32187 * 118.98772 * 180.25732 * 7 6 4
9 9 C 1.31984 * 121.20186 * 359.73528 * 8 7 6
10 10 C 1.50700 * 118.87448 * 180.02562 * 9 8 7
11 11 C 1.52999 * 117.50281 * 8.72604 * 10 9 8
12 12 C 1.52995 * 117.50003 * 300.06543 * 10 9 8
13 13 N 1.31663 * 122.24299 * 0.02562 * 9 8 7
14 14 C 1.32981 * 120.84988 * 359.97438 * 13 9 8
15 15 N 1.37844 * 120.64485 * 179.97438 * 14 13 9
16 16 C 1.46502 * 119.99884 * 354.57141 * 15 14 13
17 17 H 1.09001 * 109.46737 * 35.00130 * 16 15 14
18 18 C 1.50695 * 109.47212 * 154.99825 * 16 15 14
19 19 H 1.08009 * 119.99730 * 0.02562 * 18 16 15
20 20 C 1.37876 * 120.00326 * 180.02562 * 18 16 15
21 21 N 1.31513 * 119.99530 * 359.97438 * 20 18 16
22 22 Si 1.86803 * 120.00001 * 180.02562 * 20 18 16
23 23 H 1.48493 * 109.47176 * 0.02562 * 22 20 18
24 24 H 1.48505 * 109.46930 * 119.99775 * 22 20 18
25 25 H 1.48495 * 109.46775 * 239.99777 * 22 20 18
26 26 C 1.52995 * 109.47178 * 275.00025 * 16 15 14
27 27 C 1.53007 * 109.47251 * 64.99930 * 26 16 15
28 28 H 1.09006 * 109.47296 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47153 * 300.00245 * 1 2 3
30 30 H 1.08994 * 109.47250 * 60.00028 * 1 2 3
31 31 H 1.08990 * 109.47229 * 239.99876 * 2 1 3
32 32 H 1.09002 * 109.47000 * 119.99756 * 2 1 3
33 33 H 1.07996 * 120.50804 * 359.97438 * 7 6 4
34 34 H 1.09006 * 115.54550 * 154.40130 * 10 9 8
35 35 H 1.09001 * 117.49850 * 0.02562 * 11 10 9
36 36 H 1.08999 * 117.49620 * 145.01552 * 11 10 9
37 37 H 1.09009 * 117.50271 * 214.98191 * 12 10 9
38 38 H 1.09000 * 117.49915 * 359.97438 * 12 10 9
39 39 H 0.96995 * 119.99754 * 174.56850 * 15 14 13
40 40 H 0.97000 * 119.99658 * 180.02562 * 21 20 18
41 41 H 1.09002 * 109.46927 * 184.99826 * 26 16 15
42 42 H 1.08998 * 109.47349 * 305.00097 * 26 16 15
43 43 H 1.09003 * 109.46476 * 60.00146 * 27 26 16
44 44 H 1.09002 * 109.46839 * 179.97438 * 27 26 16
45 45 H 1.08992 * 109.47013 * 300.00001 * 27 26 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3500 1.5455 -0.0005
5 8 4.0903 0.5819 -0.0005
6 6 3.9130 2.9068 -0.0011
7 6 3.0852 4.0284 0.1074
8 7 3.6324 5.2317 0.0975
9 6 4.9387 5.3880 -0.0073
10 6 5.5065 6.7839 -0.0126
11 6 4.5525 7.9360 0.3090
12 6 5.0474 7.7291 -1.1246
13 7 5.7626 4.3659 -0.1074
14 6 5.3041 3.1177 -0.1063
15 7 6.1704 2.0508 -0.2119
16 6 7.5973 2.2862 -0.4461
17 1 7.9061 3.1928 0.0745
18 6 8.3914 1.1146 0.0714
19 1 7.8838 0.2780 0.5286
20 6 9.7657 1.1107 -0.0388
21 7 10.3836 2.1292 -0.5960
22 14 10.7499 -0.3420 0.6020
23 1 9.8251 -1.3511 1.1777
24 1 11.5150 -0.9527 -0.5147
25 1 11.6919 0.1228 1.6516
26 6 7.8478 2.4493 -1.9465
27 6 7.1417 3.7110 -2.4473
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 1.8933 -0.5138 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 2.0148 3.9136 0.1934
34 1 6.5374 6.8734 0.3302
35 1 3.5141 7.6842 0.5249
36 1 4.9557 8.7835 0.8633
37 1 5.7760 8.4408 -1.5131
38 1 4.3349 7.3412 -1.8526
39 1 5.8353 1.1441 -0.1310
40 1 11.3505 2.1262 -0.6739
41 1 8.9189 2.5358 -2.1288
42 1 7.4580 1.5802 -2.4765
43 1 7.5316 4.5800 -1.9173
44 1 7.3206 3.8273 -3.5163
45 1 6.0706 3.6245 -2.2651
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001161049100.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:50
Heat of formation + Delta-G solvation = -27.339201 kcal
Electronic energy + Delta-G solvation = -27487.860729 eV
Core-core repulsion = 23698.903671 eV
Total energy + Delta-G solvation = -3788.957059 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.168 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-42.38390 -41.09151 -38.85281 -37.62578 -37.55051 -35.16142 -33.98550 -33.34102
-32.62414 -31.47857 -28.82106 -27.03877 -25.43360 -24.33132 -24.31240 -23.13611
-22.83914 -21.98635 -21.65661 -19.43297 -19.06520 -18.22620 -17.99436 -17.71206
-17.65956 -16.79494 -16.63302 -16.23159 -15.62002 -15.36217 -15.06545 -15.01110
-14.68989 -14.66324 -14.34992 -13.72671 -13.56176 -13.25311 -13.16581 -12.97500
-12.90114 -12.81507 -12.67765 -12.48316 -12.44348 -12.22375 -12.16846 -12.03576
-11.79414 -11.65973 -11.54553 -11.42218 -11.25615 -11.02814 -10.60091 -10.48295
-10.10199 -9.06214 -8.22785 -6.39050 -0.51377 0.44332 1.37413 1.38764
1.39295 1.50707 1.53765 2.22421 2.42399 2.66257 2.92287 3.06060
3.15081 3.35915 3.69396 3.71069 3.98274 4.02490 4.07472 4.11169
4.21951 4.35175 4.38458 4.45338 4.48070 4.53015 4.67896 4.84720
4.87046 4.95812 4.97432 5.02810 5.10638 5.16219 5.19977 5.32657
5.36321 5.37916 5.43435 5.50709 5.62834 5.74208 5.85058 6.07432
6.32470 6.53691 6.68011 6.87651 7.28131 7.36869 8.82362
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.008497 B = 0.005293 C = 0.003490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3294.638620 B = 5289.030765 C = 8021.699715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.052 3.948
3 O -0.345 6.345
4 C 0.536 3.464
5 O -0.548 6.548
6 C -0.354 4.354
7 C 0.260 3.740
8 N -0.576 5.576
9 C 0.409 3.591
10 C -0.135 4.135
11 C -0.128 4.128
12 C -0.140 4.140
13 N -0.586 5.586
14 C 0.475 3.525
15 N -0.664 5.664
16 C 0.276 3.724
17 H 0.027 0.973
18 C -0.558 4.558
19 H 0.052 0.948
20 C 0.026 3.974
21 N -0.904 5.904
22 Si 0.965 3.035
23 H -0.273 1.273
24 H -0.274 1.274
25 H -0.276 1.276
26 C -0.119 4.119
27 C -0.115 4.115
28 H 0.100 0.900
29 H 0.073 0.927
30 H 0.072 0.928
31 H 0.065 0.935
32 H 0.067 0.933
33 H 0.211 0.789
34 H 0.121 0.879
35 H 0.109 0.891
36 H 0.122 0.878
37 H 0.121 0.879
38 H 0.091 0.909
39 H 0.415 0.585
40 H 0.268 0.732
41 H 0.081 0.919
42 H 0.023 0.977
43 H 0.049 0.951
44 H 0.045 0.955
45 H 0.026 0.974
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.338 5.937 -0.034 19.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.021 4.021
3 O -0.261 6.261
4 C 0.383 3.617
5 O -0.440 6.440
6 C -0.367 4.367
7 C 0.092 3.908
8 N -0.296 5.296
9 C 0.142 3.858
10 C -0.155 4.155
11 C -0.166 4.166
12 C -0.179 4.179
13 N -0.311 5.311
14 C 0.227 3.773
15 N -0.295 5.295
16 C 0.173 3.827
17 H 0.045 0.955
18 C -0.596 4.596
19 H 0.070 0.930
20 C -0.175 4.175
21 N -0.542 5.542
22 Si 0.790 3.210
23 H -0.198 1.198
24 H -0.199 1.199
25 H -0.201 1.201
26 C -0.158 4.158
27 C -0.173 4.173
28 H 0.118 0.882
29 H 0.092 0.908
30 H 0.091 0.909
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.228 0.772
34 H 0.139 0.861
35 H 0.127 0.873
36 H 0.140 0.860
37 H 0.139 0.861
38 H 0.109 0.891
39 H 0.261 0.739
40 H 0.077 0.923
41 H 0.099 0.901
42 H 0.042 0.958
43 H 0.068 0.932
44 H 0.064 0.936
45 H 0.045 0.955
Dipole moment (debyes) X Y Z Total
from point charges -17.316 6.454 -0.123 18.480
hybrid contribution 0.716 -2.512 0.307 2.630
sum -16.599 3.942 0.183 17.062
Atomic orbital electron populations
1.21818 0.89562 1.04489 1.04051 1.23365 0.97453 0.78762 1.02525
1.86505 1.21588 1.33979 1.84048 1.20536 0.81205 0.88401 0.71527
1.90596 1.60359 1.43390 1.49654 1.20057 0.93364 0.93957 1.29369
1.23757 1.01184 0.84721 0.81141 1.68258 1.12599 1.25244 1.23515
1.22625 0.85504 0.94061 0.83641 1.20800 1.00435 0.84139 1.10125
1.23106 0.99465 0.96394 0.97612 1.23044 1.03147 0.99622 0.92043
1.68106 1.40261 0.97631 1.25099 1.18811 0.86780 0.88085 0.83666
1.46182 1.08897 1.07138 1.67266 1.18642 0.74797 0.96314 0.92903
0.95514 1.21506 0.92612 1.04675 1.40820 0.92976 1.25604 0.98174
0.98862 0.94831 1.69995 1.09612 1.31220 1.43339 0.85404 0.78319
0.79011 0.78265 1.19751 1.19904 1.20114 1.21773 1.02057 0.95264
0.96723 1.21594 0.98281 0.98352 0.99057 0.88172 0.90804 0.90937
0.91617 0.91469 0.77235 0.86056 0.87288 0.85998 0.86110 0.89079
0.73867 0.92266 0.90088 0.95802 0.93179 0.93573 0.95530
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.79 10.29 71.98 0.74 -1.05 16
2 C 0.05 1.09 6.20 71.98 0.45 1.54 16
3 O -0.35 -9.00 9.58 -56.77 -0.54 -9.54 16
4 C 0.54 18.25 7.89 70.21 0.55 18.80 16
5 O -0.55 -22.01 13.61 19.77 0.27 -21.74 16
6 C -0.35 -12.48 5.92 -19.81 -0.12 -12.59 16
7 C 0.26 7.34 10.89 85.02 0.93 8.27 16
8 N -0.58 -17.31 9.30 -186.94 -1.74 -19.05 16
9 C 0.41 13.94 7.31 138.73 1.01 14.96 16
10 C -0.13 -3.67 6.23 -11.54 -0.07 -3.75 16
11 C -0.13 -2.48 10.01 30.62 0.31 -2.18 16
12 C -0.14 -2.91 10.24 30.62 0.31 -2.60 16
13 N -0.59 -24.22 6.94 -184.73 -1.28 -25.50 16
14 C 0.48 20.23 5.86 133.76 0.78 21.01 16
15 N -0.66 -31.81 5.02 -326.94 -1.64 -33.45 16
16 C 0.28 14.74 2.25 44.24 0.10 14.84 16
17 H 0.03 1.59 7.48 -2.39 -0.02 1.58 16
18 C -0.56 -31.71 8.73 25.60 0.22 -31.48 16
19 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16
20 C 0.03 1.46 5.29 84.65 0.45 1.91 16
21 N -0.90 -51.30 11.29 21.45 0.24 -51.06 16
22 Si 0.97 43.84 29.54 68.60 2.03 45.86 16
23 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16
24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16
26 C -0.12 -6.03 5.45 30.59 0.17 -5.87 16
27 C -0.12 -5.06 8.53 71.98 0.61 -4.45 16
28 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16
29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
32 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16
33 H 0.21 4.10 7.71 -2.91 -0.02 4.08 16
34 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16
35 H 0.11 2.18 7.53 -2.39 -0.02 2.16 16
36 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16
37 H 0.12 2.02 8.14 -2.38 -0.02 2.00 16
38 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16
39 H 0.42 20.17 5.23 -92.71 -0.48 19.69 16
40 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16
41 H 0.08 4.47 5.95 -2.39 -0.01 4.46 16
42 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16
43 H 0.05 2.24 7.78 -2.39 -0.02 2.22 16
44 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
45 H 0.03 1.14 5.72 -2.39 -0.01 1.13 16
Total: -1.00 -66.53 370.69 4.30 -62.23
By element:
Atomic # 1 Polarization: 34.35 SS G_CDS: 0.52 Total: 34.88 kcal
Atomic # 6 Polarization: 10.92 SS G_CDS: 6.45 Total: 17.37 kcal
Atomic # 7 Polarization: -124.63 SS G_CDS: -4.42 Total: -129.05 kcal
Atomic # 8 Polarization: -31.01 SS G_CDS: -0.27 Total: -31.28 kcal
Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal
Total: -66.53 4.30 -62.23 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001161049100.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.893 kcal
(2) G-P(sol) polarization free energy of solvation -66.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.641 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.339 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds