Wall clock time and date at job start Tue Mar 31 2020 13:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.08997 * 109.47387 * 305.40902 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.07998 * 120.00299 * 244.73777 * 5 3 2 7 7 C 1.37881 * 119.99818 * 64.73751 * 5 3 2 8 8 N 1.31514 * 119.99831 * 187.25878 * 7 5 3 9 9 Si 1.86797 * 120.00131 * 7.25952 * 7 5 3 10 10 H 1.48501 * 109.47458 * 270.00055 * 9 7 5 11 11 H 1.48501 * 109.47104 * 29.99939 * 9 7 5 12 12 H 1.48500 * 109.47435 * 149.99952 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34771 * 120.00288 * 275.00402 * 13 3 2 15 15 O 1.21283 * 120.00161 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00232 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.47564 * 179.97438 * 16 14 13 18 18 H 1.09009 * 109.67205 * 304.48643 * 17 16 14 19 19 C 1.53318 * 109.68195 * 183.94311 * 17 16 14 20 20 C 1.52732 * 108.38196 * 170.40553 * 19 17 16 21 21 C 1.50636 * 110.57882 * 51.14918 * 20 19 17 22 22 C 1.38876 * 117.72482 * 162.48946 * 21 20 19 23 23 C 1.38153 * 120.52825 * 179.43492 * 22 21 20 24 24 F 1.35102 * 120.14585 * 179.97438 * 23 22 21 25 25 C 1.38487 * 119.71009 * 0.02562 * 23 22 21 26 26 C 1.37888 * 119.75253 * 0.13128 * 25 23 22 27 27 C 1.37684 * 122.56154 * 342.15607 * 21 20 19 28 28 C 1.50638 * 122.55552 * 0.74770 * 27 21 20 29 29 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 30 30 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 32 32 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 33 33 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 34 34 H 0.96994 * 120.00258 * 354.95060 * 8 7 5 35 35 H 0.97005 * 119.99794 * 94.99777 * 13 3 2 36 36 H 1.09004 * 109.47397 * 299.99247 * 16 14 13 37 37 H 1.09000 * 109.47775 * 59.99403 * 16 14 13 38 38 H 1.08996 * 109.68140 * 290.12533 * 19 17 16 39 39 H 1.08999 * 109.68470 * 50.67827 * 19 17 16 40 40 H 1.08998 * 109.25115 * 290.86882 * 20 19 17 41 41 H 1.08995 * 109.25501 * 171.43416 * 20 19 17 42 42 H 1.08004 * 119.73297 * 359.45481 * 22 21 20 43 43 H 1.08012 * 120.12396 * 180.11323 * 25 23 22 44 44 H 1.08004 * 119.71359 * 179.97438 * 26 25 23 45 45 H 1.09002 * 109.24782 * 221.97374 * 28 27 21 46 46 H 1.09001 * 109.24942 * 102.55652 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8375 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6727 7 6 4.1310 0.9701 -1.2862 8 7 5.4380 0.8381 -1.3495 9 14 3.0740 0.5148 -2.7575 10 1 2.6849 -0.9153 -2.6641 11 1 1.8531 1.3601 -2.7704 12 1 3.8435 0.7377 -4.0079 13 7 1.6609 2.0945 1.2559 14 6 0.4444 2.6611 1.3806 15 8 -0.3363 2.6316 0.4530 16 6 0.0546 3.3323 2.6723 17 6 -1.3651 3.8894 2.5495 18 1 -1.4248 4.5556 1.6888 19 6 -1.7302 4.6583 3.8247 20 6 -3.0435 5.3990 3.5812 21 6 -4.0889 4.4591 3.0401 22 6 -5.4168 4.8596 3.1114 23 6 -6.4218 4.0479 2.6218 24 9 -7.7111 4.4450 2.6956 25 6 -6.1021 2.8250 2.0560 26 6 -4.7839 2.4262 1.9882 27 6 -3.7725 3.2412 2.4814 28 6 -2.3558 2.7396 2.3795 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.9924 1.1425 -0.6141 35 1 2.2854 2.1184 1.9978 36 1 0.0914 2.6064 3.4846 37 1 0.7474 4.1473 2.8819 38 1 -1.8507 3.9598 4.6527 39 1 -0.9428 5.3745 4.0597 40 1 -2.8756 6.2017 2.8633 41 1 -3.3952 5.8254 4.5206 42 1 -5.6657 5.8134 3.5528 43 1 -6.8824 2.1859 1.6695 44 1 -4.5353 1.4721 1.5472 45 1 -2.2071 2.2786 1.4030 46 1 -2.1809 1.9964 3.1575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186166548.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:43 Heat of formation + Delta-G solvation = -108.026092 kcal Electronic energy + Delta-G solvation = -26867.713919 eV Core-core repulsion = 23055.338052 eV Total energy + Delta-G solvation = -3812.375867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.89515 -41.31429 -40.41141 -37.59274 -36.63434 -34.42640 -33.76601 -33.24579 -31.90969 -30.30677 -29.23708 -27.59970 -24.72167 -24.21569 -23.37776 -23.18159 -21.91424 -21.08251 -20.35313 -19.71755 -18.21108 -17.58283 -17.44648 -17.29565 -16.78613 -16.61971 -16.21834 -15.68307 -15.46721 -15.20970 -14.93054 -14.72755 -14.54788 -14.40427 -14.30541 -14.16065 -13.99607 -13.75886 -13.52943 -13.29522 -13.00484 -12.71851 -12.59053 -12.44109 -12.27135 -12.19306 -12.05786 -11.70717 -11.64815 -11.54952 -11.45952 -11.23082 -10.94571 -10.65134 -10.42935 -9.84000 -9.69662 -9.37147 -8.76900 -6.45772 0.18130 0.25176 1.40380 1.49957 1.67182 1.93815 2.39368 2.57907 2.62419 3.03550 3.25646 3.63679 3.66550 3.91470 3.94408 4.04739 4.15074 4.18951 4.29116 4.32784 4.39596 4.41148 4.56145 4.57614 4.64315 4.75712 4.80562 4.84774 4.90988 4.94326 5.01764 5.08601 5.10063 5.12416 5.18695 5.20593 5.23421 5.31577 5.36692 5.47200 5.55234 5.57340 5.68519 5.70758 5.76563 5.97892 6.02117 6.54229 6.98638 7.30138 7.60558 8.61874 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.023442 B = 0.002849 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.129077 B = 9825.559907 C =10584.179076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.134 4.134 3 C 0.247 3.753 4 H 0.022 0.978 5 C -0.603 4.603 6 H 0.040 0.960 7 C -0.012 4.012 8 N -0.938 5.938 9 Si 1.080 2.920 10 H -0.259 1.259 11 H -0.266 1.266 12 H -0.289 1.289 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.577 6.577 16 C -0.128 4.128 17 C -0.066 4.066 18 H 0.060 0.940 19 C -0.109 4.109 20 C -0.080 4.080 21 C -0.056 4.056 22 C -0.158 4.158 23 C 0.071 3.929 24 F -0.150 7.150 25 C -0.161 4.161 26 C -0.100 4.100 27 C -0.086 4.086 28 C -0.079 4.079 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.257 0.743 35 H 0.401 0.599 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.138 0.862 45 H 0.074 0.926 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.168 6.717 13.885 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.173 4.173 3 C 0.142 3.858 4 H 0.040 0.960 5 C -0.641 4.641 6 H 0.058 0.942 7 C -0.211 4.211 8 N -0.574 5.574 9 Si 0.904 3.096 10 H -0.184 1.184 11 H -0.191 1.191 12 H -0.215 1.215 13 N -0.358 5.358 14 C 0.284 3.716 15 O -0.458 6.458 16 C -0.167 4.167 17 C -0.085 4.085 18 H 0.078 0.922 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.056 4.056 22 C -0.177 4.177 23 C 0.052 3.948 24 F -0.129 7.129 25 C -0.180 4.180 26 C -0.118 4.118 27 C -0.086 4.086 28 C -0.116 4.116 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.236 0.764 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.116 0.884 42 H 0.167 0.833 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.092 0.908 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.693 6.072 11.718 24.543 hybrid contribution 0.513 0.567 1.497 1.681 sum -20.180 6.639 13.215 25.019 Atomic orbital electron populations 1.21773 0.95107 1.00383 1.01768 1.22143 0.95790 0.98443 1.00938 1.18820 0.93115 0.89709 0.84173 0.95994 1.22409 0.91905 1.46190 1.03605 0.94153 1.26811 0.97682 0.93779 1.02831 1.70930 1.05426 1.44979 1.36058 0.83533 0.74362 0.78402 0.73325 1.18425 1.19097 1.21528 1.46158 1.16142 1.56638 1.16816 1.21377 0.81121 0.78163 0.90901 1.90625 1.51439 1.60825 1.42906 1.21793 0.98416 1.02115 0.94412 1.20825 0.92022 0.96675 0.98937 0.92182 1.21614 0.96969 0.99606 0.96403 1.20559 0.92742 0.96399 1.01957 1.19750 0.93954 0.94673 0.97218 1.21332 0.91854 1.01217 1.03268 1.17806 0.78381 0.95605 1.02981 1.91464 1.35667 1.91038 1.94704 1.21242 0.98200 0.96044 1.02476 1.21259 0.91540 1.00419 0.98626 1.19955 0.96163 0.94429 0.98068 1.20622 0.89604 0.98217 1.03124 0.94360 0.92604 0.92382 0.93545 0.92287 0.93340 0.76427 0.86768 0.87056 0.90446 0.89207 0.89912 0.88370 0.83274 0.83596 0.84387 0.90803 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 8.52 71.98 0.61 -4.22 16 2 C -0.13 -5.62 5.20 30.59 0.16 -5.46 16 3 C 0.25 11.29 1.81 44.24 0.08 11.37 16 4 H 0.02 1.14 6.07 -2.39 -0.01 1.12 16 5 C -0.60 -32.32 9.09 25.60 0.23 -32.09 16 6 H 0.04 2.28 7.95 -2.91 -0.02 2.26 16 7 C -0.01 -0.65 5.42 84.66 0.46 -0.19 16 8 N -0.94 -56.87 13.70 21.45 0.29 -56.58 16 9 Si 1.08 50.98 25.39 68.60 1.74 52.72 16 10 H -0.26 -11.25 6.73 99.48 0.67 -10.58 16 11 H -0.27 -12.13 6.38 99.48 0.63 -11.49 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 N -0.71 -25.86 5.03 -446.12 -2.24 -28.10 16 14 C 0.50 16.01 6.17 87.66 0.54 16.55 16 15 O -0.58 -22.39 11.15 -3.04 -0.03 -22.42 16 16 C -0.13 -2.62 5.18 29.85 0.15 -2.46 16 17 C -0.07 -1.32 1.85 -10.78 -0.02 -1.34 16 18 H 0.06 1.50 7.94 -2.38 -0.02 1.48 16 19 C -0.11 -1.46 5.28 30.61 0.16 -1.29 16 20 C -0.08 -1.10 5.67 29.74 0.17 -0.93 16 21 C -0.06 -1.05 5.74 -19.86 -0.11 -1.17 16 22 C -0.16 -2.97 9.59 22.40 0.21 -2.75 16 23 C 0.07 1.51 7.30 22.31 0.16 1.67 16 24 F -0.15 -3.34 17.27 44.97 0.78 -2.56 16 25 C -0.16 -3.25 10.03 22.25 0.22 -3.03 16 26 C -0.10 -2.11 9.60 22.35 0.21 -1.89 16 27 C -0.09 -1.85 5.74 -19.85 -0.11 -1.96 16 28 C -0.08 -1.74 4.62 29.74 0.14 -1.61 16 29 H 0.04 1.49 7.87 -2.38 -0.02 1.47 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.02 5.64 -2.39 -0.01 2.00 16 32 H 0.05 2.04 4.43 -2.39 -0.01 2.03 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.26 15.60 8.72 -92.71 -0.81 14.79 16 35 H 0.40 12.94 8.53 -92.70 -0.79 12.15 16 36 H 0.11 1.80 8.12 -2.38 -0.02 1.78 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.09 0.92 8.13 -2.39 -0.02 0.90 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.10 0.95 8.12 -2.39 -0.02 0.93 16 42 H 0.15 2.14 8.05 -2.91 -0.02 2.12 16 43 H 0.15 2.40 8.06 -2.90 -0.02 2.38 16 44 H 0.14 2.60 8.05 -2.91 -0.02 2.58 16 45 H 0.07 2.09 6.14 -2.39 -0.01 2.08 16 46 H 0.08 1.59 8.10 -2.39 -0.02 1.58 16 Total: -1.00 -66.97 360.15 3.87 -63.11 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.05 Total: 24.62 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 3.28 Total: -30.79 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -1.95 Total: -84.68 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.03 Total: -22.42 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.78 Total: -2.56 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 1.74 Total: 52.72 kcal Total: -66.97 3.87 -63.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186166548.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.919 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds