Wall clock time and date at job start Tue Mar 31 2020 12:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.52999 * 109.46810 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.36824 * 119.99989 * 274.38739 * 5 4 3 7 7 H 1.08004 * 120.00060 * 130.92881 * 6 5 4 8 8 C 1.39073 * 120.00138 * 310.93413 * 6 5 4 9 9 N 1.31349 * 119.99752 * 3.51885 * 8 6 5 10 10 Si 1.86793 * 120.00314 * 183.52331 * 8 6 5 11 11 H 1.48492 * 109.47353 * 89.99411 * 10 8 6 12 12 H 1.48501 * 109.47062 * 209.99949 * 10 8 6 13 13 H 1.48503 * 109.47022 * 329.99646 * 10 8 6 14 14 C 1.34784 * 120.00148 * 94.38248 * 5 4 3 15 15 O 1.21595 * 119.99570 * 4.09335 * 14 5 4 16 16 C 1.47760 * 119.99976 * 184.08869 * 14 5 4 17 17 C 1.39526 * 120.03356 * 174.09548 * 16 14 5 18 18 N 1.32024 * 119.94530 * 179.70820 * 17 16 14 19 19 C 1.32629 * 120.02111 * 0.54219 * 18 17 16 20 20 O 1.35492 * 119.96479 * 179.72793 * 19 18 17 21 21 C 1.42905 * 117.00107 * 359.72747 * 20 19 18 22 22 C 1.52996 * 109.47256 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.51815 * 116.28653 * 22 21 20 24 24 C 1.53000 * 60.00034 * 107.48455 * 23 22 21 25 25 C 1.39566 * 120.06674 * 359.45846 * 19 18 17 26 26 N 1.31572 * 120.05648 * 0.26511 * 25 19 18 27 27 H 1.08995 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46438 * 299.99549 * 1 2 3 29 29 H 1.08994 * 109.47338 * 59.99721 * 1 2 3 30 30 H 1.09002 * 109.46920 * 240.00606 * 2 1 3 31 31 H 1.08994 * 109.47338 * 120.00279 * 2 1 3 32 32 H 1.08993 * 109.47069 * 60.00433 * 3 2 1 33 33 H 1.08994 * 109.47314 * 300.00293 * 3 2 1 34 34 H 1.08993 * 109.47367 * 60.00106 * 4 3 2 35 35 H 1.09004 * 109.47046 * 299.99400 * 4 3 2 36 36 H 0.97001 * 119.99875 * 180.02562 * 9 8 6 37 37 H 1.08000 * 120.02551 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.46719 * 60.00247 * 21 20 19 39 39 H 1.09000 * 109.47124 * 300.00140 * 21 20 19 40 40 H 1.09009 * 115.55317 * 330.58668 * 22 21 20 41 41 H 1.09005 * 117.49851 * 214.97661 * 23 22 21 42 42 H 1.09005 * 117.49788 * 359.97438 * 23 22 21 43 43 H 1.08995 * 117.49600 * 252.51380 * 24 23 22 44 44 H 1.08998 * 117.49909 * 107.49280 * 24 23 22 45 45 H 1.08003 * 119.97023 * 180.25273 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2005 3.4996 -1.1811 7 1 3.7914 4.4936 -1.2872 8 6 4.8715 2.9068 -2.2453 9 7 5.3084 1.6725 -2.1403 10 14 5.1517 3.8657 -3.8236 11 1 6.4432 4.5935 -3.7380 12 1 5.1878 2.9267 -4.9735 13 1 4.0466 4.8392 -4.0141 14 6 4.3676 3.4287 1.1640 15 8 4.3126 2.8052 2.2065 16 6 4.7736 4.8494 1.1733 17 6 4.9745 5.5104 2.3855 18 7 5.3428 6.7782 2.3916 19 6 5.5113 7.4259 1.2465 20 8 5.8839 8.7285 1.2543 21 6 6.0718 9.3420 2.5312 22 6 6.4881 10.8017 2.3394 23 6 5.5369 11.8821 2.8580 24 6 6.8506 11.6033 3.5912 25 6 5.3105 6.7654 0.0336 26 7 4.9487 5.5004 0.0240 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 5.7768 1.2591 -2.8824 37 1 4.8329 4.9842 3.3179 38 1 6.8510 8.8112 3.0781 39 1 5.1397 9.3007 3.0948 40 1 7.0433 11.0162 1.4262 41 1 5.4663 12.8073 2.2860 42 1 4.6140 11.5530 3.3357 43 1 6.7920 11.0908 4.5514 44 1 7.6442 12.3451 3.5016 45 1 5.4521 7.2931 -0.8980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199139605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:34 Heat of formation + Delta-G solvation = 6.060094 kcal Electronic energy + Delta-G solvation = -26530.423908 eV Core-core repulsion = 22742.915151 eV Total energy + Delta-G solvation = -3787.508757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88433 -38.99362 -38.09050 -36.88457 -35.38223 -34.11907 -33.45862 -31.46015 -30.68210 -28.44420 -27.65778 -24.99833 -24.30336 -24.08544 -22.68952 -22.40930 -20.90112 -20.47181 -19.54051 -18.40239 -17.92886 -17.35061 -16.29213 -15.84802 -15.51832 -14.90643 -14.74388 -14.59148 -14.47395 -14.21158 -14.14449 -13.87620 -13.51774 -13.20628 -12.84988 -12.50577 -12.16818 -12.03056 -11.87757 -11.67574 -11.59095 -11.37494 -11.24547 -11.14056 -10.80574 -10.79078 -10.68636 -10.53927 -10.46753 -10.24528 -10.19239 -10.13700 -9.66487 -9.09629 -9.06922 -8.34387 -8.29202 -7.36431 -6.26667 -4.06732 1.05611 1.54476 2.87253 3.18198 3.25400 3.28116 3.52208 3.64126 4.11493 4.31196 4.44939 4.49583 4.53631 4.60070 4.69968 4.83043 5.02289 5.06764 5.12134 5.31949 5.36529 5.44969 5.51000 5.53997 5.57770 5.64546 5.68568 5.80173 5.87018 5.94268 6.02049 6.11884 6.26785 6.38513 6.42254 6.48617 6.63377 6.75131 6.85557 7.14836 7.26650 7.42829 7.58521 7.70845 8.01219 8.21050 8.51160 9.09748 9.39870 9.85574 10.69802 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003270 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.033487 B = 8559.484620 C = 9810.452021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.124 4.124 4 C 0.098 3.902 5 N -0.407 5.407 6 C -0.300 4.300 7 H 0.109 0.891 8 C 0.044 3.956 9 N -0.872 5.872 10 Si 0.923 3.077 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.514 3.486 15 O -0.602 6.602 16 C 0.026 3.974 17 C 0.130 3.870 18 N -0.508 5.508 19 C 0.263 3.737 20 O -0.299 6.299 21 C 0.100 3.900 22 C -0.158 4.158 23 C -0.177 4.177 24 C -0.170 4.170 25 C 0.029 3.971 26 N -0.331 5.331 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.269 0.731 37 H 0.178 0.822 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.017 11.733 4.762 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.163 4.163 4 C -0.024 4.024 5 N -0.122 5.122 6 C -0.429 4.429 7 H 0.126 0.874 8 C -0.161 4.161 9 N -0.510 5.510 10 Si 0.749 3.251 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.302 3.698 15 O -0.489 6.489 16 C -0.113 4.113 17 C -0.031 4.031 18 N -0.237 5.237 19 C 0.080 3.920 20 O -0.205 6.205 21 C 0.025 3.975 22 C -0.176 4.176 23 C -0.214 4.214 24 C -0.207 4.207 25 C -0.136 4.136 26 N -0.048 5.048 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.195 0.805 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.903 11.423 4.915 12.469 hybrid contribution 0.319 0.547 -0.646 0.905 sum -0.584 11.970 4.269 12.722 Atomic orbital electron populations 1.21759 0.96706 1.00655 1.01442 1.21423 0.94881 0.97695 1.01698 1.21862 0.97668 0.95521 1.01206 1.21818 0.91333 0.84742 1.04538 1.43403 1.51959 1.11901 1.04925 1.19868 1.33594 1.00834 0.88622 0.87409 1.25568 0.94923 0.95579 0.99994 1.69620 1.36408 1.12186 1.32749 0.85993 0.79242 0.79367 0.80452 1.20174 1.21224 1.19230 1.17797 0.82068 0.84772 0.85144 1.90637 1.60410 1.65216 1.32656 1.22289 1.02229 0.97353 0.89439 1.23429 0.91699 0.88195 0.99730 1.68077 1.16936 1.10510 1.28220 1.21265 0.93464 0.85182 0.92085 1.86182 1.82076 1.19998 1.32194 1.22123 1.01409 0.90442 0.83564 1.22166 1.04629 0.91117 0.99684 1.23103 0.94375 1.00143 1.03754 1.22980 0.99218 1.02623 0.95877 1.23390 1.01816 0.92057 0.96361 1.69743 1.03516 1.04152 1.27347 0.93438 0.93175 0.93013 0.92040 0.92454 0.93450 0.92042 0.86096 0.92581 0.92016 0.80544 0.91148 0.91452 0.86612 0.88483 0.88512 0.88433 0.88254 0.81249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.12 -2.49 5.52 -26.73 -0.15 -2.63 16 4 C 0.10 2.32 5.13 -4.04 -0.02 2.30 16 5 N -0.41 -10.25 2.49 -115.92 -0.29 -10.54 16 6 C -0.30 -7.53 7.36 -15.01 -0.11 -7.64 16 7 H 0.11 2.68 6.10 -52.48 -0.32 2.36 16 8 C 0.04 1.11 5.40 -17.45 -0.09 1.01 16 9 N -0.87 -22.74 10.95 55.50 0.61 -22.13 16 10 Si 0.92 19.79 29.55 -169.99 -5.02 14.77 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 C 0.51 12.76 7.61 -12.36 -0.09 12.67 16 15 O -0.60 -15.65 15.84 5.28 0.08 -15.57 16 16 C 0.03 0.57 6.65 -82.88 -0.55 0.02 16 17 C 0.13 2.46 10.77 -16.99 -0.18 2.28 16 18 N -0.51 -8.91 9.37 -12.74 -0.12 -9.03 16 19 C 0.26 4.44 7.50 -16.71 -0.13 4.31 16 20 O -0.30 -4.40 10.12 -18.17 -0.18 -4.58 16 21 C 0.10 1.21 5.60 37.16 0.21 1.42 16 22 C -0.16 -1.52 6.06 -90.62 -0.55 -2.07 16 23 C -0.18 -1.44 10.18 -26.73 -0.27 -1.71 16 24 C -0.17 -1.30 10.25 -26.73 -0.27 -1.58 16 25 C 0.03 0.51 11.18 -17.17 -0.19 0.32 16 26 N -0.33 -7.01 6.57 -9.50 -0.06 -7.07 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.12 3.03 5.41 -51.93 -0.28 2.75 16 35 H 0.06 1.36 7.24 -51.93 -0.38 0.99 16 36 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.18 3.11 7.65 -52.49 -0.40 2.71 16 38 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 39 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 40 H 0.12 1.11 8.14 -51.92 -0.42 0.68 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.10 0.78 8.03 -51.93 -0.42 0.36 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.17 2.52 8.06 -52.48 -0.42 2.10 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -28.65 377.57 -8.32 -36.98 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.83 Total: 6.64 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -2.20 Total: 4.85 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.14 Total: -48.77 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.10 Total: -20.15 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.65 -8.32 -36.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199139605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.036 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds