Wall clock time and date at job start Tue Mar 31 2020 12:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46977 * 2 1 4 4 C 1.52999 * 109.46810 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47116 * 180.02562 * 4 3 2 6 6 C 1.36824 * 119.99989 * 274.38739 * 5 4 3 7 7 H 1.08004 * 120.00060 * 130.92881 * 6 5 4 8 8 C 1.39073 * 120.00138 * 310.93413 * 6 5 4 9 9 N 1.31349 * 119.99752 * 3.51885 * 8 6 5 10 10 Si 1.86793 * 120.00314 * 183.52331 * 8 6 5 11 11 H 1.48492 * 109.47353 * 89.99411 * 10 8 6 12 12 H 1.48501 * 109.47062 * 209.99949 * 10 8 6 13 13 H 1.48503 * 109.47022 * 329.99646 * 10 8 6 14 14 C 1.34784 * 120.00148 * 94.38248 * 5 4 3 15 15 O 1.21595 * 119.99570 * 4.09335 * 14 5 4 16 16 C 1.47760 * 119.99976 * 184.08869 * 14 5 4 17 17 C 1.39526 * 120.03356 * 174.09548 * 16 14 5 18 18 N 1.32024 * 119.94530 * 179.70820 * 17 16 14 19 19 C 1.32629 * 120.02111 * 0.54219 * 18 17 16 20 20 O 1.35492 * 119.96479 * 179.72793 * 19 18 17 21 21 C 1.42905 * 117.00107 * 359.72747 * 20 19 18 22 22 C 1.52996 * 109.47256 * 179.97438 * 21 20 19 23 23 C 1.53001 * 117.51815 * 116.28653 * 22 21 20 24 24 C 1.53000 * 60.00034 * 107.48455 * 23 22 21 25 25 C 1.39566 * 120.06674 * 359.45846 * 19 18 17 26 26 N 1.31572 * 120.05648 * 0.26511 * 25 19 18 27 27 H 1.08995 * 109.47121 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46438 * 299.99549 * 1 2 3 29 29 H 1.08994 * 109.47338 * 59.99721 * 1 2 3 30 30 H 1.09002 * 109.46920 * 240.00606 * 2 1 3 31 31 H 1.08994 * 109.47338 * 120.00279 * 2 1 3 32 32 H 1.08993 * 109.47069 * 60.00433 * 3 2 1 33 33 H 1.08994 * 109.47314 * 300.00293 * 3 2 1 34 34 H 1.08993 * 109.47367 * 60.00106 * 4 3 2 35 35 H 1.09004 * 109.47046 * 299.99400 * 4 3 2 36 36 H 0.97001 * 119.99875 * 180.02562 * 9 8 6 37 37 H 1.08000 * 120.02551 * 359.97438 * 17 16 14 38 38 H 1.09001 * 109.46719 * 60.00247 * 21 20 19 39 39 H 1.09000 * 109.47124 * 300.00140 * 21 20 19 40 40 H 1.09009 * 115.55317 * 330.58668 * 22 21 20 41 41 H 1.09005 * 117.49851 * 214.97661 * 23 22 21 42 42 H 1.09005 * 117.49788 * 359.97438 * 23 22 21 43 43 H 1.08995 * 117.49600 * 252.51380 * 24 23 22 44 44 H 1.08998 * 117.49909 * 107.49280 * 24 23 22 45 45 H 1.08003 * 119.97023 * 180.25273 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2005 3.4996 -1.1811 7 1 3.7914 4.4936 -1.2872 8 6 4.8715 2.9068 -2.2453 9 7 5.3084 1.6725 -2.1403 10 14 5.1517 3.8657 -3.8236 11 1 6.4432 4.5935 -3.7380 12 1 5.1878 2.9267 -4.9735 13 1 4.0466 4.8392 -4.0141 14 6 4.3676 3.4287 1.1640 15 8 4.3126 2.8052 2.2065 16 6 4.7736 4.8494 1.1733 17 6 4.9745 5.5104 2.3855 18 7 5.3428 6.7782 2.3916 19 6 5.5113 7.4259 1.2465 20 8 5.8839 8.7285 1.2543 21 6 6.0718 9.3420 2.5312 22 6 6.4881 10.8017 2.3394 23 6 5.5369 11.8821 2.8580 24 6 6.8506 11.6033 3.5912 25 6 5.3105 6.7654 0.0336 26 7 4.9487 5.5004 0.0240 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 5.7768 1.2591 -2.8824 37 1 4.8329 4.9842 3.3179 38 1 6.8510 8.8112 3.0781 39 1 5.1397 9.3007 3.0948 40 1 7.0433 11.0162 1.4262 41 1 5.4663 12.8073 2.2860 42 1 4.6140 11.5530 3.3357 43 1 6.7920 11.0908 4.5514 44 1 7.6442 12.3451 3.5016 45 1 5.4521 7.2931 -0.8980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199139605.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:33 Heat of formation + Delta-G solvation = -10.025010 kcal Electronic energy + Delta-G solvation = -26531.121410 eV Core-core repulsion = 22742.915151 eV Total energy + Delta-G solvation = -3788.206259 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.36919 -40.53103 -39.51445 -37.78576 -37.19596 -35.66407 -35.00309 -33.33623 -32.15502 -29.95233 -28.79919 -26.86138 -25.81744 -25.51620 -23.96829 -23.27860 -21.97453 -21.73186 -21.36307 -19.73258 -19.65532 -18.82210 -17.51352 -17.42839 -16.83769 -16.49804 -16.40779 -16.08606 -15.85887 -15.76342 -15.37465 -15.24137 -14.88363 -14.53963 -14.28301 -14.00214 -13.70241 -13.60102 -13.28502 -12.92035 -12.88676 -12.83114 -12.51459 -12.38653 -12.23240 -12.10494 -12.07884 -11.97012 -11.85988 -11.72386 -11.44469 -11.36166 -10.98474 -10.97190 -10.83644 -10.00946 -9.78985 -9.25243 -8.14853 -6.02028 -0.47057 0.05786 1.48532 1.50386 1.61485 1.67489 1.94085 2.35449 2.73415 2.81039 2.85954 2.98062 3.13169 3.40721 3.47450 3.76356 3.90040 4.02448 4.05642 4.13801 4.19374 4.21507 4.33187 4.41395 4.45666 4.54308 4.54977 4.61037 4.76838 4.86982 4.91630 4.96448 4.99501 5.03536 5.12079 5.21609 5.22763 5.23425 5.40950 5.48318 5.56295 5.77924 5.95505 6.07730 6.15799 6.55212 6.72781 7.18911 7.50219 7.95466 8.82186 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003270 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.033487 B = 8559.484620 C = 9810.452021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.111 4.111 4 C 0.100 3.900 5 N -0.423 5.423 6 C -0.307 4.307 7 H 0.110 0.890 8 C 0.002 3.998 9 N -0.905 5.905 10 Si 0.982 3.018 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.256 1.256 14 C 0.505 3.495 15 O -0.626 6.626 16 C -0.005 4.005 17 C 0.141 3.859 18 N -0.505 5.505 19 C 0.282 3.718 20 O -0.293 6.293 21 C 0.096 3.904 22 C -0.174 4.174 23 C -0.174 4.174 24 C -0.157 4.157 25 C 0.031 3.969 26 N -0.354 5.354 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.037 0.963 36 H 0.269 0.731 37 H 0.186 0.814 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.115 0.885 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.169 14.247 4.572 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.149 4.149 4 C -0.023 4.023 5 N -0.137 5.137 6 C -0.436 4.436 7 H 0.127 0.873 8 C -0.199 4.199 9 N -0.544 5.544 10 Si 0.806 3.194 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.179 1.179 14 C 0.293 3.707 15 O -0.515 6.515 16 C -0.143 4.143 17 C -0.018 4.018 18 N -0.235 5.235 19 C 0.098 3.902 20 O -0.198 6.198 21 C 0.021 3.979 22 C -0.192 4.192 23 C -0.211 4.211 24 C -0.194 4.194 25 C -0.136 4.136 26 N -0.070 5.070 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.203 0.797 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.120 0.880 44 H 0.133 0.867 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.070 13.942 4.740 14.765 hybrid contribution 0.443 -0.023 -0.467 0.643 sum -0.628 13.919 4.273 14.574 Atomic orbital electron populations 1.21711 0.94203 1.02325 1.01738 1.21401 0.97021 0.95070 1.01809 1.21727 0.95131 0.97836 1.00231 1.21775 0.93535 0.84320 1.02686 1.43630 1.52503 1.12306 1.05297 1.20000 1.33994 1.00912 0.88704 0.87311 1.26310 0.94581 0.96234 1.02741 1.69748 1.37511 1.13494 1.33625 0.85090 0.79231 0.78248 0.76837 1.20151 1.21138 1.17945 1.18276 0.81487 0.86193 0.84707 1.90588 1.61344 1.66317 1.33238 1.21917 1.05188 0.96320 0.90833 1.23445 0.90741 0.88542 0.99076 1.68180 1.17123 1.09687 1.28460 1.21386 0.91230 0.85917 0.91681 1.86215 1.81063 1.18521 1.33971 1.22372 1.01461 0.91824 0.82265 1.22133 1.06305 0.89757 1.01018 1.23201 0.94487 0.99860 1.03555 1.23101 0.99376 1.01915 0.95034 1.23798 1.00872 0.90995 0.97942 1.69531 1.04144 1.05786 1.27575 0.91085 0.92895 0.92724 0.92047 0.92263 0.94351 0.92807 0.87639 0.94422 0.92102 0.79678 0.91321 0.91416 0.86472 0.87240 0.88576 0.88048 0.86657 0.78243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.07 16 2 C -0.11 -3.82 5.93 30.60 0.18 -3.64 16 3 C -0.11 -4.57 5.52 30.60 0.17 -4.41 16 4 C 0.10 4.91 5.13 86.38 0.44 5.35 16 5 N -0.42 -22.06 2.49 -638.90 -1.59 -23.65 16 6 C -0.31 -15.74 7.36 84.11 0.62 -15.12 16 7 H 0.11 5.46 6.10 -2.91 -0.02 5.44 16 8 C 0.00 0.13 5.40 84.97 0.46 0.58 16 9 N -0.90 -48.50 10.95 21.68 0.24 -48.26 16 10 Si 0.98 40.45 29.55 68.60 2.03 42.48 16 11 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 12 H -0.29 -11.62 7.11 99.48 0.71 -10.92 16 13 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 14 C 0.50 25.91 7.61 86.76 0.66 26.57 16 15 O -0.63 -33.81 15.84 -4.02 -0.06 -33.87 16 16 C 0.00 -0.22 6.65 41.76 0.28 0.06 16 17 C 0.14 5.32 10.77 84.97 0.91 6.24 16 18 N -0.50 -17.01 9.37 -307.00 -2.88 -19.89 16 19 C 0.28 8.98 7.50 84.89 0.64 9.61 16 20 O -0.29 -7.90 10.12 -87.93 -0.89 -8.79 16 21 C 0.10 2.11 5.60 71.98 0.40 2.51 16 22 C -0.17 -2.91 6.06 -10.79 -0.07 -2.97 16 23 C -0.17 -2.35 10.18 30.59 0.31 -2.04 16 24 C -0.16 -1.95 10.25 30.59 0.31 -1.63 16 25 C 0.03 1.03 11.18 85.05 0.95 1.99 16 26 N -0.35 -14.88 6.57 -183.96 -1.21 -16.09 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.11 5.55 5.41 -2.39 -0.01 5.54 16 35 H 0.04 1.93 7.24 -2.38 -0.02 1.92 16 36 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 37 H 0.19 6.55 7.65 -2.91 -0.02 6.53 16 38 H 0.07 1.55 8.11 -2.39 -0.02 1.53 16 39 H 0.07 1.50 7.85 -2.39 -0.02 1.48 16 40 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.10 1.32 8.03 -2.38 -0.02 1.30 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.20 5.37 8.06 -2.91 -0.02 5.35 16 Total: -1.00 -62.93 377.57 3.61 -59.32 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.99 Total: 28.71 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.99 Total: 20.04 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -5.44 Total: -107.89 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -0.95 Total: -42.67 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -62.93 3.61 -59.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199139605.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.299 kcal (2) G-P(sol) polarization free energy of solvation -62.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds