Wall clock time and date at job start Tue Mar 31 2020 13:36:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52993 * 109.47252 * 2 1
4 4 H 1.08998 * 109.47523 * 303.17813 * 3 2 1
5 5 C 1.50703 * 109.47295 * 183.17516 * 3 2 1
6 6 H 1.07998 * 120.00100 * 240.00723 * 5 3 2
7 7 C 1.37874 * 119.99813 * 59.99819 * 5 3 2
8 8 N 1.31517 * 120.00129 * 0.02562 * 7 5 3
9 9 Si 1.86804 * 120.00202 * 180.02562 * 7 5 3
10 10 H 1.48497 * 109.47002 * 89.99884 * 9 7 5
11 11 H 1.48498 * 109.47166 * 210.00316 * 9 7 5
12 12 H 1.48506 * 109.46741 * 330.00280 * 9 7 5
13 13 N 1.46907 * 109.47069 * 63.17770 * 3 2 1
14 14 C 1.46847 * 110.99863 * 65.45257 * 13 3 2
15 15 C 1.53043 * 109.52114 * 185.83964 * 14 13 3
16 16 C 1.53117 * 109.27693 * 300.81942 * 15 14 13
17 17 C 1.50698 * 109.51971 * 177.56088 * 16 15 14
18 18 O 1.21273 * 119.99889 * 270.31206 * 17 16 15
19 19 C 1.47017 * 120.00412 * 90.31994 * 17 16 15
20 20 C 1.39940 * 120.13862 * 359.71975 * 19 17 16
21 21 C 1.37749 * 119.84961 * 179.74487 * 20 19 17
22 22 C 1.38722 * 120.14555 * 0.53479 * 21 20 19
23 23 F 1.35104 * 119.85680 * 179.69844 * 22 21 20
24 24 C 1.38719 * 120.29130 * 359.71984 * 22 21 20
25 25 C 1.37746 * 120.14834 * 0.02562 * 24 22 21
26 26 C 1.53116 * 109.16213 * 57.65313 * 16 15 14
27 27 C 1.46847 * 111.00090 * 189.66047 * 13 3 2
28 28 H 1.08998 * 109.47422 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.46828 * 300.00321 * 1 2 3
30 30 H 1.09004 * 109.46857 * 59.99763 * 1 2 3
31 31 H 1.09000 * 109.46828 * 239.99679 * 2 1 3
32 32 H 1.09005 * 109.46418 * 119.99933 * 2 1 3
33 33 H 0.97003 * 120.00465 * 180.02562 * 8 7 5
34 34 H 1.08998 * 109.46017 * 305.85332 * 14 13 3
35 35 H 1.08994 * 109.46466 * 65.82034 * 14 13 3
36 36 H 1.08997 * 109.50294 * 180.87541 * 15 14 13
37 37 H 1.09001 * 109.50193 * 60.75894 * 15 14 13
38 38 H 1.09001 * 109.57251 * 297.71627 * 16 15 14
39 39 H 1.07996 * 120.08130 * 0.02562 * 20 19 17
40 40 H 1.07995 * 119.92918 * 180.25215 * 21 20 19
41 41 H 1.08001 * 119.92707 * 179.97438 * 24 22 21
42 42 H 1.08003 * 120.07879 * 179.97438 * 25 24 22
43 43 H 1.09000 * 109.50575 * 182.40017 * 26 16 15
44 44 H 1.09005 * 109.49973 * 62.28821 * 26 16 15
45 45 H 1.09008 * 109.46328 * 294.17995 * 27 13 3
46 46 H 1.09000 * 109.46460 * 54.14257 * 27 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6310 1.9725 -0.8601
5 6 3.5450 1.4432 -0.0787
6 1 4.1268 1.8959 0.7105
7 6 4.1791 0.8656 -1.1582
8 7 3.4706 0.3146 -2.1195
9 14 6.0446 0.8659 -1.2555
10 1 6.5744 -0.3594 -0.6049
11 1 6.4661 0.8921 -2.6792
12 1 6.5764 2.0652 -0.5596
13 7 1.6141 2.1124 1.2360
14 6 2.2509 1.5037 2.4109
15 6 1.6760 2.1272 3.6848
16 6 1.9303 3.6370 3.6679
17 6 1.3139 4.2652 4.8912
18 8 0.1670 4.6581 4.8585
19 6 2.1028 4.4020 6.1242
20 6 3.4246 3.9445 6.1670
21 6 4.1600 4.0805 7.3238
22 6 3.5896 4.6592 8.4481
23 9 4.3143 4.7841 9.5814
24 6 2.2781 5.1100 8.4139
25 6 1.5333 4.9848 7.2619
26 6 1.2985 4.2391 2.4099
27 6 1.8843 3.5544 1.1730
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8901
33 1 3.9167 -0.0921 -2.8788
34 1 2.0588 0.4308 2.4130
35 1 3.3259 1.6800 2.3735
36 1 2.1600 1.6863 4.5562
37 1 0.6032 1.9394 3.7297
38 1 3.0037 3.8265 3.6629
39 1 3.8687 3.4900 5.2938
40 1 5.1815 3.7316 7.3570
41 1 1.8397 5.5593 9.2927
42 1 0.5122 5.3357 7.2367
43 1 1.5128 5.3071 2.3704
44 1 0.2198 4.0845 2.4348
45 1 2.9611 3.7211 1.1413
46 1 1.4261 3.9710 0.2760
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255165387.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:34
Heat of formation + Delta-G solvation = -64.746383 kcal
Electronic energy + Delta-G solvation = -26987.295121 eV
Core-core repulsion = 23176.796003 eV
Total energy + Delta-G solvation = -3810.499118 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.169 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-49.31095 -40.44520 -38.62648 -37.77206 -34.71443 -32.23973 -31.58645 -31.29803
-30.50600 -30.15507 -26.86789 -25.14785 -23.62775 -23.22456 -22.63465 -22.30354
-20.33729 -19.30100 -18.94287 -18.13487 -16.83170 -16.72713 -16.29837 -15.98688
-15.50137 -15.07052 -14.72207 -14.61660 -14.30116 -14.08873 -13.88247 -13.52325
-13.35975 -13.17023 -13.04544 -12.81811 -12.66159 -12.39881 -12.13378 -11.75431
-11.48703 -11.41725 -11.15707 -10.96750 -10.78585 -10.72842 -10.57123 -10.45585
-10.15404 -9.91047 -9.66686 -9.54984 -9.53823 -9.22020 -9.09376 -9.06261
-8.38605 -7.12266 -6.00986 -4.14789 0.25168 0.86213 2.16798 3.23434
3.31531 3.32716 3.35113 3.78368 3.87516 4.31461 4.36394 4.47609
4.82976 4.83555 4.92445 4.98412 5.13097 5.20160 5.24344 5.48804
5.54385 5.58271 5.69423 5.75924 5.82258 5.95945 5.99746 6.06078
6.07566 6.21157 6.29846 6.34850 6.42376 6.47866 6.54487 6.62479
6.71072 6.73658 6.84675 7.12117 7.19504 7.35777 7.47546 7.59772
7.75143 7.97234 8.14301 8.31430 8.46425 8.95561 9.52925 10.98044
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.015815 B = 0.003222 C = 0.002855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1770.007122 B = 8688.947652 C = 9805.301219
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.110 4.110
3 C 0.214 3.786
4 H 0.038 0.962
5 C -0.543 4.543
6 H 0.056 0.944
7 C 0.069 3.931
8 N -0.885 5.885
9 Si 0.886 3.114
10 H -0.281 1.281
11 H -0.286 1.286
12 H -0.276 1.276
13 N -0.534 5.534
14 C 0.064 3.936
15 C -0.103 4.103
16 C -0.129 4.129
17 C 0.404 3.596
18 O -0.449 6.449
19 C -0.175 4.175
20 C -0.041 4.041
21 C -0.166 4.166
22 C 0.125 3.875
23 F -0.136 7.136
24 C -0.168 4.168
25 C -0.036 4.036
26 C -0.102 4.102
27 C 0.065 3.935
28 H 0.024 0.976
29 H 0.048 0.952
30 H 0.038 0.962
31 H 0.091 0.909
32 H 0.032 0.968
33 H 0.261 0.739
34 H 0.074 0.926
35 H 0.040 0.960
36 H 0.060 0.940
37 H 0.070 0.930
38 H 0.090 0.910
39 H 0.147 0.853
40 H 0.143 0.857
41 H 0.140 0.860
42 H 0.143 0.857
43 H 0.057 0.943
44 H 0.076 0.924
45 H 0.035 0.965
46 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.076 7.139 17.352 18.794
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.148 4.148
3 C 0.108 3.892
4 H 0.056 0.944
5 C -0.583 4.583
6 H 0.074 0.926
7 C -0.134 4.134
8 N -0.523 5.523
9 Si 0.714 3.286
10 H -0.207 1.207
11 H -0.212 1.212
12 H -0.201 1.201
13 N -0.258 5.258
14 C -0.064 4.064
15 C -0.141 4.141
16 C -0.148 4.148
17 C 0.281 3.719
18 O -0.323 6.323
19 C -0.177 4.177
20 C -0.059 4.059
21 C -0.185 4.185
22 C 0.105 3.895
23 F -0.115 7.115
24 C -0.187 4.187
25 C -0.054 4.054
26 C -0.140 4.140
27 C -0.064 4.064
28 H 0.043 0.957
29 H 0.068 0.932
30 H 0.057 0.943
31 H 0.109 0.891
32 H 0.051 0.949
33 H 0.071 0.929
34 H 0.093 0.907
35 H 0.058 0.942
36 H 0.079 0.921
37 H 0.089 0.911
38 H 0.109 0.891
39 H 0.165 0.835
40 H 0.160 0.840
41 H 0.158 0.842
42 H 0.161 0.839
43 H 0.076 0.924
44 H 0.094 0.906
45 H 0.054 0.946
46 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -2.153 7.196 17.226 18.792
hybrid contribution 2.337 0.074 0.096 2.340
sum 0.183 7.270 17.322 18.786
Atomic orbital electron populations
1.21713 0.98847 0.98359 1.00675 1.21595 0.92221 0.99158 1.01876
1.19265 0.92718 0.91076 0.86125 0.94418 1.21732 0.92752 1.37653
1.06117 0.92560 1.24908 0.97812 0.95086 0.95579 1.69874 1.34919
1.37752 1.09741 0.86704 0.86340 0.78318 0.77264 1.20716 1.21222
1.20108 1.62387 1.57620 1.01563 1.04218 1.21876 0.96730 0.98902
0.88929 1.21601 1.02345 0.91244 0.98878 1.21720 1.01382 0.97915
0.93757 1.22588 0.86802 0.74500 0.88022 1.90500 1.18440 1.38433
1.84932 1.20764 0.95940 1.04399 0.96561 1.21491 0.92444 0.94218
0.97744 1.21174 1.01899 1.03024 0.92366 1.18063 0.90086 0.98706
0.82630 1.91524 1.77375 1.93622 1.48944 1.21124 0.93069 1.04264
1.00258 1.21311 1.00073 0.93439 0.90552 1.21543 1.01473 0.98100
0.92876 1.21825 0.98485 0.89975 0.96086 0.95690 0.93243 0.94290
0.89087 0.94910 0.92887 0.90730 0.94221 0.92119 0.91111 0.89140
0.83499 0.83965 0.84179 0.83885 0.92444 0.90553 0.94638 0.91495
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.76 9.79 37.16 0.36 -2.40 16
2 C -0.11 -2.52 5.11 -26.73 -0.14 -2.65 16
3 C 0.21 5.03 1.73 -68.86 -0.12 4.91 16
4 H 0.04 1.00 7.99 -51.93 -0.42 0.58 16
5 C -0.54 -13.79 7.23 -34.44 -0.25 -14.04 16
6 H 0.06 1.42 5.84 -52.49 -0.31 1.11 16
7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16
8 N -0.88 -24.20 11.30 55.43 0.63 -23.57 16
9 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16
10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
12 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16
13 N -0.53 -10.54 3.98 -228.08 -0.91 -11.45 16
14 C 0.06 1.14 4.78 -3.83 -0.02 1.12 16
15 C -0.10 -1.46 5.36 -26.65 -0.14 -1.60 16
16 C -0.13 -1.72 2.03 -91.65 -0.19 -1.91 16
17 C 0.40 5.24 6.17 -30.75 -0.19 5.05 16
18 O -0.45 -6.95 16.12 5.56 0.09 -6.86 16
19 C -0.18 -1.91 5.87 -105.07 -0.62 -2.52 16
20 C -0.04 -0.38 9.36 -39.12 -0.37 -0.75 16
21 C -0.17 -1.45 10.01 -39.58 -0.40 -1.85 16
22 C 0.12 1.16 7.31 -39.22 -0.29 0.87 16
23 F -0.14 -1.34 17.26 2.25 0.04 -1.30 16
24 C -0.17 -1.46 10.01 -39.58 -0.40 -1.86 16
25 C -0.04 -0.35 9.59 -39.12 -0.38 -0.72 16
26 C -0.10 -1.55 5.02 -26.66 -0.13 -1.68 16
27 C 0.07 1.18 5.18 -3.84 -0.02 1.16 16
28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16
29 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16
30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.09 2.35 5.99 -51.93 -0.31 2.03 16
32 H 0.03 0.73 6.28 -51.93 -0.33 0.40 16
33 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
34 H 0.07 1.39 6.14 -51.93 -0.32 1.07 16
35 H 0.04 0.75 6.39 -51.93 -0.33 0.42 16
36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
38 H 0.09 1.09 6.47 -51.93 -0.34 0.76 16
39 H 0.15 1.22 6.36 -52.49 -0.33 0.88 16
40 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16
41 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16
42 H 0.14 1.32 7.65 -52.48 -0.40 0.92 16
43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
44 H 0.08 1.25 7.78 -51.93 -0.40 0.85 16
45 H 0.04 0.68 7.27 -51.92 -0.38 0.31 16
46 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16
LS Contribution 364.36 15.07 5.49 5.49
Total: -1.00 -27.82 364.36 -9.82 -37.64
By element:
Atomic # 1 Polarization: 8.61 SS G_CDS: -6.77 Total: 1.84 kcal
Atomic # 6 Polarization: -13.80 SS G_CDS: -3.36 Total: -17.17 kcal
Atomic # 7 Polarization: -34.74 SS G_CDS: -0.28 Total: -35.02 kcal
Atomic # 8 Polarization: -6.95 SS G_CDS: 0.09 Total: -6.86 kcal
Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal
Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -27.82 -9.82 -37.64 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255165387.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.111 kcal
(2) G-P(sol) polarization free energy of solvation -27.818 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.929 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal
(6) G-S(sol) free energy of system = (1) + (5) -64.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds