Wall clock time and date at job start Tue Mar 31 2020 13:36:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52993 * 109.47252 * 2 1
4 4 H 1.08998 * 109.47523 * 303.17813 * 3 2 1
5 5 C 1.50703 * 109.47295 * 183.17516 * 3 2 1
6 6 H 1.07998 * 120.00100 * 240.00723 * 5 3 2
7 7 C 1.37874 * 119.99813 * 59.99819 * 5 3 2
8 8 N 1.31517 * 120.00129 * 0.02562 * 7 5 3
9 9 Si 1.86804 * 120.00202 * 180.02562 * 7 5 3
10 10 H 1.48497 * 109.47002 * 89.99884 * 9 7 5
11 11 H 1.48498 * 109.47166 * 210.00316 * 9 7 5
12 12 H 1.48506 * 109.46741 * 330.00280 * 9 7 5
13 13 N 1.46907 * 109.47069 * 63.17770 * 3 2 1
14 14 C 1.46847 * 110.99863 * 65.45257 * 13 3 2
15 15 C 1.53043 * 109.52114 * 185.83964 * 14 13 3
16 16 C 1.53117 * 109.27693 * 300.81942 * 15 14 13
17 17 C 1.50698 * 109.51971 * 177.56088 * 16 15 14
18 18 O 1.21273 * 119.99889 * 270.31206 * 17 16 15
19 19 C 1.47017 * 120.00412 * 90.31994 * 17 16 15
20 20 C 1.39940 * 120.13862 * 359.71975 * 19 17 16
21 21 C 1.37749 * 119.84961 * 179.74487 * 20 19 17
22 22 C 1.38722 * 120.14555 * 0.53479 * 21 20 19
23 23 F 1.35104 * 119.85680 * 179.69844 * 22 21 20
24 24 C 1.38719 * 120.29130 * 359.71984 * 22 21 20
25 25 C 1.37746 * 120.14834 * 0.02562 * 24 22 21
26 26 C 1.53116 * 109.16213 * 57.65313 * 16 15 14
27 27 C 1.46847 * 111.00090 * 189.66047 * 13 3 2
28 28 H 1.08998 * 109.47422 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.46828 * 300.00321 * 1 2 3
30 30 H 1.09004 * 109.46857 * 59.99763 * 1 2 3
31 31 H 1.09000 * 109.46828 * 239.99679 * 2 1 3
32 32 H 1.09005 * 109.46418 * 119.99933 * 2 1 3
33 33 H 0.97003 * 120.00465 * 180.02562 * 8 7 5
34 34 H 1.08998 * 109.46017 * 305.85332 * 14 13 3
35 35 H 1.08994 * 109.46466 * 65.82034 * 14 13 3
36 36 H 1.08997 * 109.50294 * 180.87541 * 15 14 13
37 37 H 1.09001 * 109.50193 * 60.75894 * 15 14 13
38 38 H 1.09001 * 109.57251 * 297.71627 * 16 15 14
39 39 H 1.07996 * 120.08130 * 0.02562 * 20 19 17
40 40 H 1.07995 * 119.92918 * 180.25215 * 21 20 19
41 41 H 1.08001 * 119.92707 * 179.97438 * 24 22 21
42 42 H 1.08003 * 120.07879 * 179.97438 * 25 24 22
43 43 H 1.09000 * 109.50575 * 182.40017 * 26 16 15
44 44 H 1.09005 * 109.49973 * 62.28821 * 26 16 15
45 45 H 1.09008 * 109.46328 * 294.17995 * 27 13 3
46 46 H 1.09000 * 109.46460 * 54.14257 * 27 13 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.6310 1.9725 -0.8601
5 6 3.5450 1.4432 -0.0787
6 1 4.1268 1.8959 0.7105
7 6 4.1791 0.8656 -1.1582
8 7 3.4706 0.3146 -2.1195
9 14 6.0446 0.8659 -1.2555
10 1 6.5744 -0.3594 -0.6049
11 1 6.4661 0.8921 -2.6792
12 1 6.5764 2.0652 -0.5596
13 7 1.6141 2.1124 1.2360
14 6 2.2509 1.5037 2.4109
15 6 1.6760 2.1272 3.6848
16 6 1.9303 3.6370 3.6679
17 6 1.3139 4.2652 4.8912
18 8 0.1670 4.6581 4.8585
19 6 2.1028 4.4020 6.1242
20 6 3.4246 3.9445 6.1670
21 6 4.1600 4.0805 7.3238
22 6 3.5896 4.6592 8.4481
23 9 4.3143 4.7841 9.5814
24 6 2.2781 5.1100 8.4139
25 6 1.5333 4.9848 7.2619
26 6 1.2985 4.2391 2.4099
27 6 1.8843 3.5544 1.1730
28 1 -0.3634 -1.0276 -0.0005
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 1.8933 -0.5139 -0.8900
32 1 1.8933 -0.5139 0.8901
33 1 3.9167 -0.0921 -2.8788
34 1 2.0588 0.4308 2.4130
35 1 3.3259 1.6800 2.3735
36 1 2.1600 1.6863 4.5562
37 1 0.6032 1.9394 3.7297
38 1 3.0037 3.8265 3.6629
39 1 3.8687 3.4900 5.2938
40 1 5.1815 3.7316 7.3570
41 1 1.8397 5.5593 9.2927
42 1 0.5122 5.3357 7.2367
43 1 1.5128 5.3071 2.3704
44 1 0.2198 4.0845 2.4348
45 1 2.9611 3.7211 1.1413
46 1 1.4261 3.9710 0.2760
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255165387.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:36:33
Heat of formation + Delta-G solvation = -77.718674 kcal
Electronic energy + Delta-G solvation = -26987.857641 eV
Core-core repulsion = 23176.796003 eV
Total energy + Delta-G solvation = -3811.061638 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.169 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.03299 -41.45526 -39.77999 -38.92647 -36.29063 -33.92471 -32.86227 -32.13512
-31.64202 -31.54720 -28.58749 -26.51903 -24.88183 -24.22414 -23.91364 -23.61759
-21.57006 -20.82049 -20.30283 -18.88447 -18.24491 -17.77305 -17.46350 -17.06002
-16.70738 -16.27327 -15.94560 -15.84355 -15.55384 -15.32364 -15.02526 -14.76186
-14.61943 -14.24994 -14.21738 -14.13316 -13.84013 -13.65058 -13.32188 -13.19623
-13.15911 -12.88131 -12.69505 -12.49565 -12.23887 -12.14164 -12.05445 -11.89952
-11.66993 -11.52537 -11.38287 -11.07786 -10.93852 -10.46358 -10.38189 -10.21910
-9.84406 -8.83313 -7.97847 -6.21143 -0.54676 0.18974 1.26448 1.40353
1.42749 1.50348 2.43437 2.59284 2.87818 3.12021 3.20150 3.46308
3.63736 3.77212 3.84528 3.92970 4.09230 4.16454 4.25590 4.41308
4.45533 4.57938 4.64553 4.72802 4.77484 4.81095 4.83736 4.89108
4.94341 4.95339 4.98114 5.02851 5.08691 5.10008 5.17521 5.28180
5.31425 5.36167 5.44448 5.47663 5.56105 5.68849 5.73544 5.84197
6.12248 6.25144 6.44330 6.49781 6.76651 7.01281 7.50199 8.96518
Molecular weight = 319.17amu
Principal moments of inertia in cm(-1)
A = 0.015815 B = 0.003222 C = 0.002855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1770.007122 B = 8688.947652 C = 9805.301219
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.105 4.105
3 C 0.221 3.779
4 H -0.001 1.001
5 C -0.547 4.547
6 H 0.057 0.943
7 C 0.020 3.980
8 N -0.914 5.914
9 Si 0.945 3.055
10 H -0.276 1.276
11 H -0.289 1.289
12 H -0.269 1.269
13 N -0.535 5.535
14 C 0.066 3.934
15 C -0.092 4.092
16 C -0.127 4.127
17 C 0.414 3.586
18 O -0.479 6.479
19 C -0.190 4.190
20 C -0.038 4.038
21 C -0.164 4.164
22 C 0.119 3.881
23 F -0.139 7.139
24 C -0.165 4.165
25 C -0.039 4.039
26 C -0.093 4.093
27 C 0.068 3.932
28 H 0.044 0.956
29 H 0.056 0.944
30 H 0.029 0.971
31 H 0.060 0.940
32 H 0.035 0.965
33 H 0.260 0.740
34 H 0.065 0.935
35 H 0.030 0.970
36 H 0.090 0.910
37 H 0.062 0.938
38 H 0.110 0.890
39 H 0.160 0.840
40 H 0.162 0.838
41 H 0.161 0.839
42 H 0.145 0.855
43 H 0.072 0.928
44 H 0.063 0.937
45 H 0.024 0.976
46 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.034 7.528 19.748 21.134
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.143 4.143
3 C 0.113 3.887
4 H 0.017 0.983
5 C -0.586 4.586
6 H 0.075 0.925
7 C -0.180 4.180
8 N -0.553 5.553
9 Si 0.772 3.228
10 H -0.202 1.202
11 H -0.215 1.215
12 H -0.194 1.194
13 N -0.259 5.259
14 C -0.062 4.062
15 C -0.130 4.130
16 C -0.146 4.146
17 C 0.293 3.707
18 O -0.356 6.356
19 C -0.191 4.191
20 C -0.056 4.056
21 C -0.183 4.183
22 C 0.100 3.900
23 F -0.118 7.118
24 C -0.183 4.183
25 C -0.058 4.058
26 C -0.131 4.131
27 C -0.061 4.061
28 H 0.063 0.937
29 H 0.075 0.925
30 H 0.049 0.951
31 H 0.078 0.922
32 H 0.053 0.947
33 H 0.069 0.931
34 H 0.083 0.917
35 H 0.048 0.952
36 H 0.109 0.891
37 H 0.080 0.920
38 H 0.128 0.872
39 H 0.177 0.823
40 H 0.179 0.821
41 H 0.178 0.822
42 H 0.163 0.837
43 H 0.091 0.909
44 H 0.082 0.918
45 H 0.043 0.957
46 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -1.105 7.591 19.644 21.089
hybrid contribution 2.017 -0.021 -0.615 2.109
sum 0.912 7.570 19.030 20.500
Atomic orbital electron populations
1.21574 0.96615 0.99623 1.00571 1.21436 0.94179 0.98322 1.00374
1.19016 0.91723 0.91314 0.86602 0.98311 1.22002 0.93847 1.36899
1.05885 0.92500 1.25623 1.01772 0.95080 0.95478 1.70016 1.36374
1.38681 1.10233 0.85758 0.81613 0.78494 0.76967 1.20229 1.21494
1.19406 1.62330 1.57757 1.02313 1.03525 1.21882 0.96189 0.98583
0.89517 1.21485 1.01823 0.91761 0.97888 1.21703 1.02412 0.97219
0.93252 1.22564 0.86307 0.73444 0.88356 1.90500 1.19707 1.40011
1.85371 1.20615 0.96497 1.06093 0.95887 1.21603 0.91770 0.93820
0.98409 1.21389 1.02728 1.02365 0.91798 1.18257 0.90341 0.98714
0.82712 1.91521 1.77461 1.93637 1.49162 1.21305 0.92801 1.03662
1.00548 1.21389 1.00362 0.93369 0.90637 1.21412 1.00544 0.98765
0.92335 1.21812 0.97824 0.89197 0.97272 0.93721 0.92489 0.95134
0.92156 0.94670 0.93109 0.91678 0.95182 0.89105 0.91959 0.87247
0.82295 0.82061 0.82179 0.83705 0.90939 0.91789 0.95724 0.92929
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.04 9.79 71.98 0.70 -4.33 16
2 C -0.10 -4.87 5.11 30.59 0.16 -4.71 16
3 C 0.22 10.63 1.73 44.17 0.08 10.71 16
4 H 0.00 -0.06 7.99 -2.39 -0.02 -0.08 16
5 C -0.55 -28.12 7.23 25.60 0.18 -27.93 16
6 H 0.06 2.86 5.84 -2.91 -0.02 2.85 16
7 C 0.02 1.06 5.30 84.65 0.45 1.51 16
8 N -0.91 -51.23 11.30 21.45 0.24 -50.99 16
9 Si 0.95 41.95 29.54 68.60 2.03 43.98 16
10 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16
11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16
12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16
13 N -0.54 -21.29 3.98 -875.51 -3.48 -24.78 16
14 C 0.07 2.30 4.78 86.33 0.41 2.71 16
15 C -0.09 -2.42 5.36 30.65 0.16 -2.26 16
16 C -0.13 -3.15 2.03 -11.46 -0.02 -3.17 16
17 C 0.41 9.96 6.17 27.99 0.17 10.13 16
18 O -0.48 -14.30 16.12 -3.01 -0.05 -14.35 16
19 C -0.19 -3.67 5.87 -20.15 -0.12 -3.79 16
20 C -0.04 -0.60 9.36 22.57 0.21 -0.38 16
21 C -0.16 -2.36 10.01 22.27 0.22 -2.13 16
22 C 0.12 1.89 7.31 22.50 0.16 2.05 16
23 F -0.14 -2.38 17.26 44.97 0.78 -1.60 16
24 C -0.16 -2.43 10.01 22.27 0.22 -2.21 16
25 C -0.04 -0.69 9.59 22.57 0.22 -0.47 16
26 C -0.09 -2.73 5.02 30.64 0.15 -2.58 16
27 C 0.07 2.47 5.18 86.32 0.45 2.91 16
28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
29 H 0.06 2.16 7.70 -2.39 -0.02 2.14 16
30 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16
31 H 0.06 3.20 5.99 -2.39 -0.01 3.18 16
32 H 0.03 1.58 6.28 -2.38 -0.01 1.57 16
33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16
34 H 0.06 2.37 6.14 -2.39 -0.01 2.35 16
35 H 0.03 1.10 6.39 -2.39 -0.02 1.09 16
36 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
37 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16
38 H 0.11 2.34 6.47 -2.39 -0.02 2.32 16
39 H 0.16 2.06 6.36 -2.91 -0.02 2.04 16
40 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16
41 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16
42 H 0.15 2.44 7.65 -2.91 -0.02 2.42 16
43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
44 H 0.06 2.07 7.78 -2.38 -0.02 2.05 16
45 H 0.02 0.95 7.27 -2.38 -0.02 0.93 16
46 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16
Total: -1.00 -60.66 364.36 4.31 -56.35
By element:
Atomic # 1 Polarization: 14.34 SS G_CDS: 0.98 Total: 15.32 kcal
Atomic # 6 Polarization: -27.75 SS G_CDS: 3.82 Total: -23.94 kcal
Atomic # 7 Polarization: -72.52 SS G_CDS: -3.24 Total: -75.77 kcal
Atomic # 8 Polarization: -14.30 SS G_CDS: -0.05 Total: -14.35 kcal
Atomic # 9 Polarization: -2.38 SS G_CDS: 0.78 Total: -1.60 kcal
Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal
Total: -60.66 4.31 -56.35 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255165387.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.366 kcal
(2) G-P(sol) polarization free energy of solvation -60.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.030 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds