Wall clock time and date at job start Tue Mar 31 2020 12:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47068 * 2 1 4 4 C 1.50694 * 109.47444 * 239.99661 * 2 1 3 5 5 H 1.07996 * 120.00344 * 237.00778 * 4 2 1 6 6 C 1.37880 * 120.00003 * 57.00653 * 4 2 1 7 7 N 1.31518 * 119.99922 * 5.54720 * 6 4 2 8 8 Si 1.86800 * 120.00357 * 185.54034 * 6 4 2 9 9 H 1.48499 * 109.46983 * 85.00271 * 8 6 4 10 10 H 1.48489 * 109.47499 * 205.00546 * 8 6 4 11 11 H 1.48504 * 109.46833 * 325.00675 * 8 6 4 12 12 C 1.53002 * 109.46809 * 119.99892 * 2 1 3 13 13 N 1.46502 * 109.47098 * 299.99915 * 12 2 1 14 14 C 1.34775 * 119.99903 * 180.02562 * 13 12 2 15 15 O 1.21554 * 120.00303 * 359.97438 * 14 13 12 16 16 C 1.47854 * 119.99702 * 180.02562 * 14 13 12 17 17 C 1.39572 * 120.14196 * 180.02562 * 16 14 13 18 18 C 1.37958 * 119.85736 * 180.02562 * 17 16 14 19 19 C 1.38364 * 120.13821 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.85363 * 179.97438 * 19 18 17 21 21 N 1.46502 * 109.47454 * 89.99731 * 20 19 18 22 22 C 1.34772 * 120.00374 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00007 * 180.02562 * 22 21 20 24 24 O 1.21592 * 119.99980 * 359.97438 * 22 21 20 25 25 C 1.38362 * 120.29484 * 0.23008 * 19 18 17 26 26 C 1.37958 * 120.14342 * 359.49231 * 25 19 18 27 27 H 1.08996 * 109.47476 * 293.93458 * 1 2 3 28 28 H 1.09004 * 109.46604 * 53.93786 * 1 2 3 29 29 H 1.09003 * 109.47115 * 173.93282 * 1 2 3 30 30 H 1.09008 * 109.47143 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47187 * 299.99377 * 3 2 1 32 32 H 1.09005 * 109.47276 * 59.99984 * 3 2 1 33 33 H 0.96998 * 119.99691 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46964 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.47264 * 59.99843 * 12 2 1 36 36 H 0.97000 * 120.00083 * 0.02562 * 13 12 2 37 37 H 1.08006 * 120.07369 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.93327 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.47859 * 210.00032 * 20 19 18 40 40 H 1.09003 * 109.47288 * 330.00266 * 20 19 18 41 41 H 0.97005 * 119.99395 * 0.02562 * 21 20 19 42 42 H 0.97003 * 120.00587 * 0.02562 * 23 22 21 43 43 H 0.97004 * 119.99833 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.92789 * 179.74343 * 25 19 18 45 45 H 1.07997 * 120.07563 * 180.25437 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6926 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4817 7 7 0.9352 0.8208 -2.6072 8 14 2.1443 -1.2471 -3.9991 9 1 1.1621 -2.3362 -4.2323 10 1 2.1711 -0.3441 -5.1775 11 1 3.4933 -1.8329 -3.7935 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6695 15 8 2.5763 -1.4791 3.7812 16 6 1.3842 0.2060 4.8767 17 6 1.7203 -0.2676 6.1458 18 6 1.2563 0.3868 7.2682 19 6 0.4589 1.5100 7.1376 20 6 -0.0449 2.2194 8.3680 21 7 0.9181 3.2489 8.7669 22 6 0.6761 4.0149 9.8490 23 7 1.5618 4.9623 10.2156 24 8 -0.3416 3.8519 10.4941 25 6 0.1176 1.9816 5.8824 26 6 0.5797 1.3398 4.7520 27 1 -0.3634 0.4169 0.9392 28 1 -0.3633 0.6050 -0.8308 29 1 -0.3633 -1.0219 -0.1086 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.6660 1.1262 -3.4876 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 2.3417 -1.1450 6.2491 38 1 1.5153 0.0211 8.2508 39 1 -1.0060 2.6856 8.1508 40 1 -0.1647 1.5005 9.1785 41 1 1.7298 3.3792 8.2520 42 1 2.3733 5.0932 9.7004 43 1 1.3875 5.5139 10.9943 44 1 -0.5085 2.8563 5.7874 45 1 0.3160 1.7113 3.7728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412214845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:27 Heat of formation + Delta-G solvation = -53.554850 kcal Electronic energy + Delta-G solvation = -25808.024066 eV Core-core repulsion = 22017.930211 eV Total energy + Delta-G solvation = -3790.093855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43527 -39.89586 -38.51323 -36.41351 -35.15341 -34.00426 -33.44759 -31.66118 -31.21809 -30.61537 -27.05480 -25.78636 -25.57130 -24.82550 -22.88029 -22.43147 -21.48314 -20.20975 -18.94475 -18.72937 -17.98651 -17.64137 -16.19238 -15.90746 -15.49761 -15.40008 -15.21728 -14.96278 -14.83271 -14.61549 -14.52569 -14.11506 -13.75767 -13.19330 -13.07901 -12.98314 -12.89522 -12.45134 -12.23126 -11.78486 -11.46926 -11.30104 -11.20945 -10.90045 -10.73173 -10.72216 -10.43631 -10.25400 -10.09214 -9.73118 -9.68240 -9.41794 -9.33350 -9.21237 -9.11863 -8.84536 -8.50384 -8.35771 -6.06480 -4.15273 0.59282 1.15317 2.51880 2.86079 3.04523 3.26650 3.33280 3.36217 3.60036 3.82522 4.16276 4.27466 4.37400 4.52865 4.71579 4.90847 5.06267 5.13592 5.20855 5.30253 5.42209 5.59400 5.77005 6.01099 6.05350 6.12196 6.23072 6.25713 6.26743 6.31633 6.45202 6.52734 6.63092 6.71225 6.75210 6.87352 6.93756 6.96136 7.29599 7.50391 7.56312 7.65962 7.94221 7.95128 8.09061 8.24978 8.33237 8.57364 8.84911 9.50304 10.95633 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027963 B = 0.002152 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.073429 B =13007.618272 C =13522.967599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.543 3.457 15 O -0.547 6.547 16 C -0.114 4.114 17 C -0.066 4.066 18 C -0.108 4.108 19 C -0.097 4.097 20 C 0.179 3.821 21 N -0.741 5.741 22 C 0.705 3.295 23 N -0.868 5.868 24 O -0.596 6.596 25 C -0.105 4.105 26 C -0.089 4.089 27 H 0.005 0.995 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.086 0.914 32 H 0.004 0.996 33 H 0.260 0.740 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.398 0.602 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.399 0.601 42 H 0.397 0.603 43 H 0.415 0.585 44 H 0.130 0.870 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 7.829 20.504 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.008 3.992 13 N -0.359 5.359 14 C 0.329 3.671 15 O -0.427 6.427 16 C -0.117 4.117 17 C -0.084 4.084 18 C -0.127 4.127 19 C -0.098 4.098 20 C 0.056 3.944 21 N -0.397 5.397 22 C 0.403 3.597 23 N -0.436 5.436 24 O -0.474 6.474 25 C -0.124 4.124 26 C -0.107 4.107 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.105 0.895 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.233 0.767 42 H 0.225 0.775 43 H 0.247 0.753 44 H 0.148 0.852 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.313 6.958 20.824 21.958 hybrid contribution 0.699 0.245 -1.187 1.399 sum 0.385 7.203 19.637 20.920 Atomic orbital electron populations 1.21817 0.97689 1.00282 0.98943 1.18368 0.92805 0.92774 0.90588 1.21860 0.98673 0.98306 0.99996 1.20947 1.29414 1.14373 0.89862 0.92388 1.24882 0.94968 0.94781 0.98838 1.69820 1.37806 1.21371 1.23337 0.86585 0.79048 0.79909 0.82320 1.20610 1.21332 1.19965 1.21774 0.98293 0.95928 0.83181 1.46284 1.52065 1.31621 1.05930 1.18288 0.80928 0.84336 0.83525 1.90745 1.38628 1.26381 1.86927 1.20265 1.00113 0.96897 0.94414 1.21304 0.97347 0.99103 0.90690 1.21053 0.97478 0.95274 0.98848 1.19991 0.98928 0.96516 0.94321 1.20068 0.91601 0.89125 0.93655 1.45160 1.25898 1.38425 1.30242 1.15967 0.83345 0.79451 0.80923 1.42993 1.25064 1.40099 1.35459 1.90986 1.27723 1.72648 1.56077 1.21023 0.99948 1.00005 0.91408 1.21418 0.95771 0.94258 0.99300 0.97557 0.89919 0.95075 0.95373 0.89491 0.97694 0.92973 0.92467 0.92426 0.76591 0.84420 0.85280 0.90401 0.90452 0.76665 0.77476 0.75341 0.85202 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.03 37.16 0.30 -2.54 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.85 8.11 37.16 0.30 -2.55 16 4 C -0.51 -13.03 8.01 -34.44 -0.28 -13.30 16 5 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 6 C 0.07 1.73 5.13 -17.82 -0.09 1.64 16 7 N -0.89 -23.16 9.45 55.43 0.52 -22.63 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 C 0.13 2.70 4.50 -4.04 -0.02 2.69 16 13 N -0.71 -12.27 4.85 -61.25 -0.30 -12.57 16 14 C 0.54 9.31 7.77 -12.33 -0.10 9.21 16 15 O -0.55 -11.23 16.35 5.32 0.09 -11.14 16 16 C -0.11 -1.50 5.87 -104.97 -0.62 -2.11 16 17 C -0.07 -0.76 9.60 -39.19 -0.38 -1.13 16 18 C -0.11 -0.96 9.68 -39.64 -0.38 -1.34 16 19 C -0.10 -0.80 5.25 -104.53 -0.55 -1.35 16 20 C 0.18 1.39 5.79 -5.20 -0.03 1.36 16 21 N -0.74 -5.14 5.55 -66.42 -0.37 -5.51 16 22 C 0.71 6.27 8.84 -86.93 -0.77 5.51 16 23 N -0.87 -4.12 8.88 27.63 0.25 -3.87 16 24 O -0.60 -8.11 17.18 5.28 0.09 -8.02 16 25 C -0.11 -0.92 9.68 -39.64 -0.38 -1.31 16 26 C -0.09 -0.96 9.54 -39.19 -0.37 -1.33 16 27 H 0.01 0.10 6.71 -51.93 -0.35 -0.24 16 28 H 0.08 1.99 6.25 -51.93 -0.32 1.67 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.09 2.11 6.10 -51.93 -0.32 1.79 16 32 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 33 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.40 6.13 4.19 -40.82 -0.17 5.96 16 37 H 0.14 1.63 7.65 -52.48 -0.40 1.23 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 40 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 41 H 0.40 1.97 8.48 -40.82 -0.35 1.62 16 42 H 0.40 0.75 8.84 -40.82 -0.36 0.39 16 43 H 0.41 1.63 8.93 -40.82 -0.36 1.26 16 44 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 45 H 0.13 1.30 6.41 -52.49 -0.34 0.97 16 LS Contribution 370.77 15.07 5.59 5.59 Total: -1.00 -32.15 370.77 -8.84 -40.99 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -6.24 Total: 7.13 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -3.44 Total: -5.38 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: 0.10 Total: -44.58 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.15 -8.84 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412214845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.568 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds