Wall clock time and date at job start Tue Mar 31 2020 12:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47068 * 2 1 4 4 C 1.50694 * 109.47444 * 239.99661 * 2 1 3 5 5 H 1.07996 * 120.00344 * 237.00778 * 4 2 1 6 6 C 1.37880 * 120.00003 * 57.00653 * 4 2 1 7 7 N 1.31518 * 119.99922 * 5.54720 * 6 4 2 8 8 Si 1.86800 * 120.00357 * 185.54034 * 6 4 2 9 9 H 1.48499 * 109.46983 * 85.00271 * 8 6 4 10 10 H 1.48489 * 109.47499 * 205.00546 * 8 6 4 11 11 H 1.48504 * 109.46833 * 325.00675 * 8 6 4 12 12 C 1.53002 * 109.46809 * 119.99892 * 2 1 3 13 13 N 1.46502 * 109.47098 * 299.99915 * 12 2 1 14 14 C 1.34775 * 119.99903 * 180.02562 * 13 12 2 15 15 O 1.21554 * 120.00303 * 359.97438 * 14 13 12 16 16 C 1.47854 * 119.99702 * 180.02562 * 14 13 12 17 17 C 1.39572 * 120.14196 * 180.02562 * 16 14 13 18 18 C 1.37958 * 119.85736 * 180.02562 * 17 16 14 19 19 C 1.38364 * 120.13821 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.85363 * 179.97438 * 19 18 17 21 21 N 1.46502 * 109.47454 * 89.99731 * 20 19 18 22 22 C 1.34772 * 120.00374 * 180.02562 * 21 20 19 23 23 N 1.34774 * 120.00007 * 180.02562 * 22 21 20 24 24 O 1.21592 * 119.99980 * 359.97438 * 22 21 20 25 25 C 1.38362 * 120.29484 * 0.23008 * 19 18 17 26 26 C 1.37958 * 120.14342 * 359.49231 * 25 19 18 27 27 H 1.08996 * 109.47476 * 293.93458 * 1 2 3 28 28 H 1.09004 * 109.46604 * 53.93786 * 1 2 3 29 29 H 1.09003 * 109.47115 * 173.93282 * 1 2 3 30 30 H 1.09008 * 109.47143 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47187 * 299.99377 * 3 2 1 32 32 H 1.09005 * 109.47276 * 59.99984 * 3 2 1 33 33 H 0.96998 * 119.99691 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46964 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.47264 * 59.99843 * 12 2 1 36 36 H 0.97000 * 120.00083 * 0.02562 * 13 12 2 37 37 H 1.08006 * 120.07369 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.93327 * 179.97438 * 18 17 16 39 39 H 1.09001 * 109.47859 * 210.00032 * 20 19 18 40 40 H 1.09003 * 109.47288 * 330.00266 * 20 19 18 41 41 H 0.97005 * 119.99395 * 0.02562 * 21 20 19 42 42 H 0.97003 * 120.00587 * 0.02562 * 23 22 21 43 43 H 0.97004 * 119.99833 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.92789 * 179.74343 * 25 19 18 45 45 H 1.07997 * 120.07563 * 180.25437 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6926 -1.5595 -1.1320 6 6 1.6492 -0.2765 -2.4817 7 7 0.9352 0.8208 -2.6072 8 14 2.1443 -1.2471 -3.9991 9 1 1.1621 -2.3362 -4.2323 10 1 2.1711 -0.3441 -5.1775 11 1 3.4933 -1.8329 -3.7935 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8775 -0.4907 3.6695 15 8 2.5763 -1.4791 3.7812 16 6 1.3842 0.2060 4.8767 17 6 1.7203 -0.2676 6.1458 18 6 1.2563 0.3868 7.2682 19 6 0.4589 1.5100 7.1376 20 6 -0.0449 2.2194 8.3680 21 7 0.9181 3.2489 8.7669 22 6 0.6761 4.0149 9.8490 23 7 1.5618 4.9623 10.2156 24 8 -0.3416 3.8519 10.4941 25 6 0.1176 1.9816 5.8824 26 6 0.5797 1.3398 4.7520 27 1 -0.3634 0.4169 0.9392 28 1 -0.3633 0.6050 -0.8308 29 1 -0.3633 -1.0219 -0.1086 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.6660 1.1262 -3.4876 34 1 3.1299 -0.7217 1.2491 35 1 1.6766 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 2.3417 -1.1450 6.2491 38 1 1.5153 0.0211 8.2508 39 1 -1.0060 2.6856 8.1508 40 1 -0.1647 1.5005 9.1785 41 1 1.7298 3.3792 8.2520 42 1 2.3733 5.0932 9.7004 43 1 1.3875 5.5139 10.9943 44 1 -0.5085 2.8563 5.7874 45 1 0.3160 1.7113 3.7728 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412214845.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:26 Heat of formation + Delta-G solvation = -76.960428 kcal Electronic energy + Delta-G solvation = -25809.039008 eV Core-core repulsion = 22017.930211 eV Total energy + Delta-G solvation = -3791.108797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37552 -40.78702 -39.59140 -38.09848 -35.91503 -35.09512 -34.58035 -33.01182 -32.06855 -31.85211 -28.08997 -27.57299 -27.33615 -26.33704 -23.70795 -23.41878 -22.12623 -21.39251 -20.64595 -19.35489 -19.11805 -18.31729 -17.79594 -17.14292 -16.66587 -16.40503 -16.31019 -16.16915 -15.81273 -15.68756 -15.61090 -15.02817 -14.77766 -14.63465 -14.53515 -14.32225 -13.93686 -13.64036 -13.48008 -13.22295 -13.07570 -12.69780 -12.60930 -12.58257 -12.24966 -12.14402 -12.04381 -11.53068 -11.49171 -11.32310 -10.96445 -10.71142 -10.69890 -10.39833 -10.13976 -10.01201 -9.94421 -9.80800 -8.03373 -6.17380 -0.29118 0.38413 1.42769 1.45694 1.52816 1.70236 2.16940 2.20251 2.24134 2.48561 2.87845 3.20773 3.52733 3.73440 3.78440 3.83473 3.99550 4.27087 4.36875 4.42124 4.49606 4.64522 4.68369 4.71231 4.84369 4.97661 5.03703 5.04137 5.10226 5.18118 5.24706 5.33295 5.37881 5.43300 5.49417 5.55388 5.66638 5.68282 5.85113 5.91101 6.07862 6.13292 6.20323 6.42467 6.60490 6.86010 7.10033 7.22197 7.49720 7.67851 8.96154 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.027963 B = 0.002152 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.073429 B =13007.618272 C =13522.967599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.146 3.854 13 N -0.703 5.703 14 C 0.543 3.457 15 O -0.589 6.589 16 C -0.136 4.136 17 C -0.074 4.074 18 C -0.099 4.099 19 C -0.077 4.077 20 C 0.182 3.818 21 N -0.730 5.730 22 C 0.700 3.300 23 N -0.849 5.849 24 O -0.647 6.647 25 C -0.098 4.098 26 C -0.087 4.087 27 H 0.038 0.962 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.260 0.740 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.408 0.592 37 H 0.127 0.873 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.411 0.589 42 H 0.414 0.586 43 H 0.420 0.580 44 H 0.155 0.845 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.201 9.391 22.041 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.209 1.209 11 H -0.202 1.202 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.332 3.668 15 O -0.472 6.472 16 C -0.140 4.140 17 C -0.093 4.093 18 C -0.117 4.117 19 C -0.078 4.078 20 C 0.058 3.942 21 N -0.387 5.387 22 C 0.398 3.602 23 N -0.418 5.418 24 O -0.529 6.529 25 C -0.116 4.116 26 C -0.106 4.106 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.247 0.753 37 H 0.145 0.855 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.248 0.752 42 H 0.244 0.756 43 H 0.253 0.747 44 H 0.173 0.827 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.680 8.564 22.348 23.942 hybrid contribution 0.838 -0.198 -1.565 1.787 sum 0.157 8.366 20.782 22.404 Atomic orbital electron populations 1.21662 0.97009 0.99288 0.99776 1.18369 0.93288 0.93124 0.90222 1.21694 0.98006 0.97717 1.00429 1.21234 1.29546 1.14425 0.91559 0.93745 1.25442 0.95224 0.95581 1.00869 1.69918 1.38117 1.21878 1.23667 0.85795 0.78496 0.78822 0.79813 1.20516 1.20880 1.20164 1.21325 0.97188 0.95207 0.84047 1.46071 1.52335 1.31819 1.05193 1.18909 0.79850 0.83769 0.84317 1.90715 1.40550 1.28371 1.87536 1.19986 1.02621 0.98445 0.92920 1.21312 0.97747 0.99247 0.90986 1.21218 0.96700 0.94916 0.98893 1.20056 0.97540 0.95744 0.94480 1.20002 0.91758 0.89256 0.93179 1.44984 1.26123 1.37791 1.29823 1.16174 0.83166 0.79986 0.80892 1.42826 1.24823 1.38726 1.35455 1.90956 1.30026 1.74199 1.57738 1.21263 0.99393 1.00271 0.90683 1.21505 0.95157 0.93395 1.00535 0.94315 0.91973 0.96316 0.96264 0.91760 0.94422 0.93017 0.94085 0.94135 0.75294 0.85497 0.83065 0.90403 0.90553 0.75229 0.75562 0.74705 0.82728 0.84302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.03 71.98 0.58 -4.60 16 2 C 0.05 2.29 0.50 -52.93 -0.03 2.27 16 3 C -0.12 -5.20 8.11 71.98 0.58 -4.62 16 4 C -0.53 -27.63 8.01 25.60 0.20 -27.43 16 5 H 0.04 2.38 7.75 -2.91 -0.02 2.35 16 6 C 0.03 1.51 5.13 84.65 0.43 1.94 16 7 N -0.90 -47.09 9.45 21.45 0.20 -46.89 16 8 Si 0.94 42.23 29.54 68.60 2.03 44.26 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.15 4.50 86.38 0.39 6.54 16 13 N -0.70 -23.98 4.85 -465.96 -2.26 -26.24 16 14 C 0.54 18.59 7.77 86.79 0.67 19.26 16 15 O -0.59 -24.83 16.35 -3.89 -0.06 -24.89 16 16 C -0.14 -3.44 5.87 -20.09 -0.12 -3.55 16 17 C -0.07 -1.61 9.60 22.53 0.22 -1.40 16 18 C -0.10 -1.49 9.68 22.23 0.22 -1.28 16 19 C -0.08 -1.02 5.25 -19.81 -0.10 -1.12 16 20 C 0.18 2.28 5.79 85.63 0.50 2.78 16 21 N -0.73 -7.94 5.55 -482.30 -2.68 -10.62 16 22 C 0.70 10.88 8.84 179.06 1.58 12.46 16 23 N -0.85 -5.91 8.88 -184.75 -1.64 -7.55 16 24 O -0.65 -16.76 17.18 -4.01 -0.07 -16.83 16 25 C -0.10 -1.36 9.68 22.23 0.22 -1.15 16 26 C -0.09 -1.65 9.54 22.53 0.21 -1.44 16 27 H 0.04 1.38 6.71 -2.39 -0.02 1.36 16 28 H 0.06 2.97 6.25 -2.38 -0.01 2.95 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.02 0.81 8.14 -2.38 -0.02 0.80 16 31 H 0.06 3.09 6.10 -2.39 -0.01 3.08 16 32 H 0.04 1.33 6.86 -2.38 -0.02 1.31 16 33 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 34 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.41 11.87 4.19 -92.71 -0.39 11.48 16 37 H 0.13 3.01 7.65 -2.91 -0.02 2.99 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 39 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 40 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 41 H 0.41 2.58 8.48 -92.70 -0.79 1.80 16 42 H 0.41 0.29 8.84 -92.71 -0.82 -0.53 16 43 H 0.42 2.38 8.93 -92.71 -0.83 1.55 16 44 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.14 2.35 6.41 -2.91 -0.02 2.33 16 Total: -1.00 -71.08 370.77 -0.69 -71.77 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: -1.76 Total: 18.33 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 5.56 Total: -1.34 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -6.38 Total: -91.30 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.13 Total: -41.72 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -71.08 -0.69 -71.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412214845.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.187 kcal (2) G-P(sol) polarization free energy of solvation -71.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds