Wall clock time and date at job start Tue Mar 31 2020 12:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99353 * 2 1 3 5 5 N 1.46498 * 109.47362 * 300.00549 * 4 2 1 6 6 C 1.34778 * 119.99989 * 179.97438 * 5 4 2 7 7 N 1.34776 * 119.99893 * 179.97438 * 6 5 4 8 8 O 1.21587 * 120.00012 * 359.97438 * 6 5 4 9 9 N 1.46501 * 109.46867 * 119.99937 * 2 1 3 10 10 C 1.34784 * 119.99968 * 299.99484 * 9 2 1 11 11 O 1.21280 * 119.99871 * 0.02562 * 10 9 2 12 12 C 1.50701 * 119.99906 * 180.02562 * 10 9 2 13 13 C 1.50700 * 109.46813 * 180.02562 * 12 10 9 14 14 C 1.37640 * 120.13180 * 265.30632 * 13 12 10 15 15 C 1.38613 * 120.24862 * 180.32332 * 14 13 12 16 16 C 1.38655 * 120.50174 * 359.67182 * 15 14 13 17 17 C 1.37598 * 120.24576 * 359.97438 * 16 15 14 18 18 C 1.40702 * 120.12495 * 85.00356 * 13 12 10 19 19 C 1.41393 * 120.24620 * 359.97406 * 18 13 12 20 20 H 1.07999 * 119.99787 * 29.07372 * 19 18 13 21 21 C 1.39938 * 120.00244 * 209.07592 * 19 18 13 22 22 N 1.30823 * 120.00241 * 197.10039 * 21 19 18 23 23 Si 1.86803 * 119.99882 * 17.09514 * 21 19 18 24 24 H 1.48495 * 109.47432 * 270.00073 * 23 21 19 25 25 H 1.48498 * 109.46929 * 30.00589 * 23 21 19 26 26 H 1.48504 * 109.46998 * 150.00206 * 23 21 19 27 27 H 1.09004 * 109.46850 * 300.00693 * 1 2 3 28 28 H 1.08997 * 109.46884 * 59.99940 * 1 2 3 29 29 H 1.08998 * 109.47395 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46853 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46947 * 299.99405 * 3 2 1 32 32 H 1.08994 * 109.47717 * 59.99876 * 3 2 1 33 33 H 1.09000 * 109.47175 * 60.00524 * 4 2 1 34 34 H 1.09001 * 109.47390 * 180.02562 * 4 2 1 35 35 H 0.96997 * 119.99952 * 359.97438 * 5 4 2 36 36 H 0.96997 * 120.00048 * 359.97438 * 7 6 5 37 37 H 0.97003 * 119.99705 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00101 * 120.00297 * 9 2 1 39 39 H 1.08999 * 109.47299 * 60.00523 * 12 10 9 40 40 H 1.08998 * 109.47401 * 299.99992 * 12 10 9 41 41 H 1.08005 * 119.87130 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.74473 * 179.69460 * 15 14 13 43 43 H 1.08002 * 119.87493 * 180.02562 * 16 15 14 44 44 H 1.08003 * 120.12022 * 180.02562 * 17 16 15 45 45 H 0.97004 * 119.99819 * 355.45620 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.5516 -2.1025 -1.2491 6 6 1.8768 -2.9323 -2.2601 7 7 1.4279 -4.2031 -2.2598 8 8 2.5751 -2.5345 -3.1725 9 7 2.0183 -0.6906 1.1962 10 6 1.6927 -0.2300 2.4204 11 8 0.9952 0.7558 2.5316 12 6 2.1955 -0.9401 3.6508 13 6 1.6926 -0.2300 4.8812 14 6 2.4762 0.7163 5.5017 15 6 2.0188 1.3661 6.6374 16 6 0.7665 1.0767 7.1575 17 6 -0.0369 0.1395 6.5496 18 6 0.4175 -0.5273 5.3965 19 6 -0.3992 -1.4925 4.7636 20 1 0.0525 -2.3113 4.2233 21 6 -1.7926 -1.3868 4.8373 22 7 -2.5428 -2.4214 4.5574 23 14 -2.5815 0.2315 5.3355 24 1 -2.7494 0.2670 6.8105 25 1 -1.7128 1.3577 4.9088 26 1 -3.9097 0.3562 4.6830 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 -0.2076 -2.1392 34 1 3.1300 -0.7218 -1.2489 35 1 0.9942 -2.4198 -0.5214 36 1 0.8711 -4.5206 -1.5318 37 1 1.6616 -4.8002 -2.9877 38 1 2.5760 -1.4792 1.1072 39 1 3.2855 -0.9397 3.6507 40 1 1.8325 -1.9679 3.6511 41 1 3.4532 0.9499 5.1048 42 1 2.6424 2.1037 7.1205 43 1 0.4200 1.5894 8.0427 44 1 -1.0121 -0.0840 6.9562 45 1 -2.1372 -3.2417 4.2354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463209460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:18 Heat of formation + Delta-G solvation = -60.632569 kcal Electronic energy + Delta-G solvation = -27548.160554 eV Core-core repulsion = 23757.759786 eV Total energy + Delta-G solvation = -3790.400768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35589 -39.47484 -37.92624 -36.46996 -34.05063 -33.67916 -33.23254 -32.24047 -30.97884 -30.15635 -27.23210 -26.86055 -26.32137 -24.54520 -21.73531 -21.30891 -21.11897 -19.58241 -19.23130 -18.44670 -18.10126 -17.65490 -16.45412 -15.97419 -15.51557 -15.26269 -15.01358 -14.84066 -14.38108 -14.23826 -13.85152 -13.79007 -13.44209 -13.22704 -13.01117 -12.65507 -12.47454 -12.18008 -12.05743 -11.84577 -11.82496 -11.37751 -11.26770 -11.06131 -10.97978 -10.78469 -10.49855 -10.30704 -10.15428 -9.91024 -9.71091 -9.28086 -9.21546 -9.02846 -8.96558 -8.78339 -7.66589 -7.58981 -7.19165 -4.51129 2.57517 2.71985 2.74712 3.03793 3.25112 3.30192 3.41439 3.52574 3.65455 4.08245 4.31712 4.48808 4.60469 4.94357 5.05313 5.29979 5.44947 5.55559 5.59049 5.72864 5.76805 5.81836 5.90702 5.99170 6.00346 6.07165 6.20067 6.20495 6.22329 6.40456 6.51667 6.52973 6.55129 6.70946 6.74586 6.82761 7.05865 7.35116 7.50144 7.66276 7.70924 7.74847 7.84860 7.90852 8.00697 8.39170 8.43409 8.59888 8.79764 8.83988 10.06325 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.004073 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.713454 B = 6872.199544 C = 7697.581003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 C -0.161 4.161 4 C 0.138 3.862 5 N -0.743 5.743 6 C 0.706 3.294 7 N -0.869 5.869 8 O -0.599 6.599 9 N -0.741 5.741 10 C 0.523 3.477 11 O -0.509 6.509 12 C -0.072 4.072 13 C -0.170 4.170 14 C -0.068 4.068 15 C -0.244 4.244 16 C -0.076 4.076 17 C -0.245 4.245 18 C 0.116 3.884 19 C -0.512 4.512 20 H 0.074 0.926 21 C 0.048 3.952 22 N -0.824 5.824 23 Si 1.069 2.931 24 H -0.280 1.280 25 H -0.258 1.258 26 H -0.294 1.294 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.401 0.599 36 H 0.398 0.602 37 H 0.414 0.586 38 H 0.394 0.606 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 -1.402 -9.275 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.080 3.920 3 C -0.219 4.219 4 C 0.013 3.987 5 N -0.401 5.401 6 C 0.404 3.596 7 N -0.436 5.436 8 O -0.478 6.478 9 N -0.396 5.396 10 C 0.310 3.690 11 O -0.382 6.382 12 C -0.112 4.112 13 C -0.171 4.171 14 C -0.086 4.086 15 C -0.263 4.263 16 C -0.095 4.095 17 C -0.264 4.264 18 C 0.113 3.887 19 C -0.541 4.541 20 H 0.092 0.908 21 C -0.170 4.170 22 N -0.447 5.447 23 Si 0.896 3.104 24 H -0.207 1.207 25 H -0.182 1.182 26 H -0.221 1.221 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.236 0.764 36 H 0.226 0.774 37 H 0.245 0.755 38 H 0.227 0.773 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.197 0.465 -9.617 10.941 hybrid contribution 1.283 -1.970 -0.003 2.352 sum 6.481 -1.505 -9.620 11.697 Atomic orbital electron populations 1.22237 0.93703 1.02278 1.04002 1.20482 0.94986 0.92896 0.83667 1.22163 1.00928 0.94798 1.04054 1.21545 0.99318 0.80197 0.97617 1.45172 1.56827 1.12490 1.25583 1.15957 0.80067 0.81101 0.82506 1.42998 1.58487 1.12119 1.30038 1.90964 1.43076 1.76304 1.37424 1.46281 1.55507 1.32523 1.05297 1.20923 0.79655 0.84661 0.83735 1.90624 1.35624 1.25758 1.86218 1.20275 0.99527 1.00205 0.91149 1.19007 0.97900 1.02767 0.97450 1.20424 0.97370 0.95542 0.95309 1.20333 0.98019 1.06648 1.01349 1.20608 0.94352 0.96611 0.97899 1.21131 1.01067 1.04736 0.99431 1.17495 0.91322 0.90024 0.89839 1.20483 0.92875 1.09386 1.31373 0.90831 1.27111 0.94503 1.03251 0.92130 1.70586 1.40742 1.02661 1.30758 0.83651 0.75364 0.74851 0.76519 1.20731 1.18190 1.22130 0.89272 0.92138 0.92914 0.92588 0.91932 0.89344 0.90197 0.90951 0.76354 0.77384 0.75456 0.77283 0.90628 0.89106 0.89238 0.89042 0.88919 0.87842 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.23 37.16 0.31 -1.95 16 2 C 0.17 2.03 0.72 -131.82 -0.09 1.93 16 3 C -0.16 -2.00 8.40 37.16 0.31 -1.69 16 4 C 0.14 1.48 4.60 -4.05 -0.02 1.46 16 5 N -0.74 -7.51 4.98 -65.23 -0.33 -7.83 16 6 C 0.71 8.15 8.84 -86.92 -0.77 7.38 16 7 N -0.87 -6.55 8.88 27.63 0.25 -6.31 16 8 O -0.60 -9.46 17.18 5.29 0.09 -9.37 16 9 N -0.74 -9.67 4.83 -47.61 -0.23 -9.90 16 10 C 0.52 9.22 7.24 -10.98 -0.08 9.14 16 11 O -0.51 -10.99 12.24 5.56 0.07 -10.92 16 12 C -0.07 -1.28 5.36 -29.03 -0.16 -1.44 16 13 C -0.17 -3.75 4.43 -103.91 -0.46 -4.21 16 14 C -0.07 -1.43 9.66 -39.66 -0.38 -1.81 16 15 C -0.24 -5.15 10.05 -39.29 -0.39 -5.55 16 16 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 17 C -0.24 -5.96 7.26 -38.87 -0.28 -6.24 16 18 C 0.12 2.88 5.13 -106.83 -0.55 2.33 16 19 C -0.51 -13.08 8.80 -37.75 -0.33 -13.41 16 20 H 0.07 1.87 6.60 -52.49 -0.35 1.52 16 21 C 0.05 1.26 5.42 -17.34 -0.09 1.17 16 22 N -0.82 -21.68 13.65 55.55 0.76 -20.92 16 23 Si 1.07 25.28 24.89 -169.99 -4.23 21.05 16 24 H -0.28 -6.28 6.45 56.52 0.36 -5.92 16 25 H -0.26 -6.34 7.01 56.52 0.40 -5.94 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H 0.09 1.57 6.17 -51.93 -0.32 1.25 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.70 6.86 -51.93 -0.36 0.34 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.38 6.17 -51.93 -0.32 1.06 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.69 7.17 -40.82 -0.29 3.40 16 36 H 0.40 2.09 8.84 -40.82 -0.36 1.73 16 37 H 0.41 2.65 8.93 -40.82 -0.36 2.29 16 38 H 0.39 4.21 8.31 -40.82 -0.34 3.87 16 39 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 40 H 0.09 1.61 6.51 -51.93 -0.34 1.27 16 41 H 0.09 1.64 8.06 -52.48 -0.42 1.21 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.10 2.52 4.43 -52.48 -0.23 2.28 16 45 H 0.28 7.11 8.73 -40.82 -0.36 6.76 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -32.26 363.04 -7.81 -40.07 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.27 Total: 13.65 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -3.39 Total: -14.98 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.45 Total: -44.97 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.16 Total: -20.30 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -4.23 Total: 21.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.26 -7.81 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463209460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.561 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds