Wall clock time and date at job start Tue Mar 31 2020 14:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.46933 * 2 1 4 4 O 1.21288 * 120.00059 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00099 * 179.97438 * 3 2 1 6 6 C 1.39916 * 120.00318 * 174.99666 * 5 3 2 7 7 C 1.38942 * 120.03386 * 325.70225 * 6 5 3 8 8 C 1.38137 * 120.06735 * 179.72004 * 7 6 5 9 9 C 1.38183 * 120.14257 * 0.55202 * 8 7 6 10 10 C 1.50699 * 119.97061 * 179.69923 * 9 8 7 11 11 C 1.38898 * 120.06783 * 359.72506 * 9 8 7 12 12 N 1.39948 * 120.03484 * 179.97438 * 11 9 8 13 13 C 1.34769 * 119.99852 * 157.77225 * 12 11 9 14 14 O 1.21587 * 120.00524 * 354.26837 * 13 12 11 15 15 N 1.34780 * 119.99845 * 174.27680 * 13 12 11 16 16 C 1.46497 * 120.00221 * 359.97438 * 15 13 12 17 17 C 1.46497 * 119.99925 * 179.97438 * 15 13 12 18 18 C 1.50703 * 109.47613 * 89.99653 * 17 15 13 19 19 H 1.08002 * 119.99498 * 359.97438 * 18 17 15 20 20 C 1.37875 * 120.00560 * 179.97438 * 18 17 15 21 21 N 1.31506 * 120.00432 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99848 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47115 * 89.99217 * 22 20 18 24 24 H 1.48494 * 109.46964 * 209.99851 * 22 20 18 25 25 H 1.48501 * 109.46723 * 329.99437 * 22 20 18 26 26 C 1.38729 * 120.03747 * 145.97175 * 6 5 3 27 27 H 1.08996 * 109.47567 * 60.00253 * 1 2 3 28 28 H 1.09004 * 109.46805 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47332 * 299.99589 * 1 2 3 30 30 H 1.09002 * 109.47153 * 119.99695 * 2 1 3 31 31 H 1.08997 * 109.47152 * 240.00033 * 2 1 3 32 32 H 0.97002 * 119.99932 * 354.99630 * 5 3 2 33 33 H 1.08000 * 119.96929 * 359.97109 * 7 6 5 34 34 H 1.08002 * 119.93081 * 180.27416 * 8 7 6 35 35 H 1.08999 * 109.47178 * 270.02831 * 10 9 8 36 36 H 1.09001 * 109.46873 * 30.02252 * 10 9 8 37 37 H 1.08996 * 109.47246 * 150.02134 * 10 9 8 38 38 H 0.96996 * 119.99932 * 337.76482 * 12 11 9 39 39 H 1.09007 * 109.46684 * 90.00033 * 16 15 13 40 40 H 1.08998 * 109.47488 * 210.00096 * 16 15 13 41 41 H 1.09005 * 109.46687 * 330.00703 * 16 15 13 42 42 H 1.09003 * 109.47459 * 209.99837 * 17 15 13 43 43 H 1.09001 * 109.47335 * 329.99558 * 17 15 13 44 44 H 0.96994 * 120.00883 * 180.02562 * 21 20 18 45 45 H 1.08004 * 120.07154 * 359.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8246 2.9817 -0.1052 7 6 3.1314 3.9063 -0.8767 8 6 3.5890 5.2058 -0.9768 9 6 4.7431 5.5877 -0.3198 10 6 5.2424 7.0047 -0.4372 11 6 5.4437 4.6667 0.4484 12 7 6.6128 5.0541 1.1131 13 6 7.0447 4.3537 2.1804 14 8 6.3663 3.4503 2.6298 15 7 8.2286 4.6547 2.7497 16 6 9.0463 5.7429 2.2081 17 6 8.6979 3.8936 3.9102 18 6 9.5091 2.7129 3.4422 19 1 9.6596 2.5459 2.3859 20 6 10.0590 1.8459 4.3624 21 7 10.7664 0.8153 3.9540 22 14 9.7981 2.1344 6.1896 23 1 8.5679 1.4296 6.6312 24 1 10.9656 1.6131 6.9447 25 1 9.6533 3.5901 6.4450 26 6 4.9836 3.3620 0.5557 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.9871 0.9331 0.0742 33 1 2.2318 3.6097 -1.3953 34 1 3.0460 5.9238 -1.5736 35 1 5.9183 7.0824 -1.2888 36 1 4.3968 7.6771 -0.5821 37 1 5.7731 7.2797 0.4743 38 1 7.1122 5.8267 0.8056 39 1 8.7787 6.6780 2.7003 40 1 10.1002 5.5281 2.3847 41 1 8.8682 5.8324 1.1365 42 1 9.3173 4.5339 4.5384 43 1 7.8410 3.5411 4.4843 44 1 11.1530 0.2052 4.6013 45 1 5.5264 2.6442 1.1529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426572014.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:12 Heat of formation + Delta-G solvation = -27.319504 kcal Electronic energy + Delta-G solvation = -26724.627392 eV Core-core repulsion = 22935.671188 eV Total energy + Delta-G solvation = -3788.956205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77928 -39.98576 -38.34862 -35.53273 -35.10580 -33.99223 -33.03201 -32.50816 -31.37074 -29.70860 -28.28436 -26.70423 -25.96720 -24.37124 -23.42758 -22.07488 -21.38599 -20.18969 -19.39770 -18.32717 -17.29601 -17.14950 -17.00799 -16.05851 -15.69970 -15.27617 -15.19198 -14.77553 -14.54228 -14.17018 -13.89386 -13.85582 -13.48832 -13.32329 -13.25315 -12.78888 -12.55349 -12.50307 -12.43946 -12.15180 -12.01592 -11.96960 -11.62133 -11.56070 -11.40268 -11.35594 -11.01372 -10.56577 -10.54730 -10.20339 -10.03491 -9.68646 -9.59608 -9.25975 -8.63050 -8.15571 -7.86927 -7.53081 -6.12850 -4.12002 1.35824 1.62367 2.54749 2.93633 3.14774 3.26978 3.32950 3.35132 3.60846 4.08313 4.32624 4.36264 4.51373 4.84201 4.87825 4.94136 5.03876 5.19587 5.25888 5.31640 5.38005 5.49409 5.53709 5.56717 5.59037 5.69220 5.71251 5.73046 5.91087 5.97065 5.99889 6.01928 6.28313 6.40233 6.53460 6.57625 6.68679 6.77421 6.84598 7.19333 7.29468 7.40515 7.42857 7.57041 8.07977 8.37215 8.42764 8.89651 9.05650 9.47174 11.00406 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.011603 B = 0.003637 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.657104 B = 7695.924272 C = 9649.358962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.144 4.144 3 C 0.511 3.489 4 O -0.524 6.524 5 N -0.671 5.671 6 C 0.160 3.840 7 C -0.147 4.147 8 C -0.082 4.082 9 C -0.146 4.146 10 C -0.108 4.108 11 C 0.201 3.799 12 N -0.687 5.687 13 C 0.699 3.301 14 O -0.565 6.565 15 N -0.606 5.606 16 C 0.081 3.919 17 C 0.230 3.770 18 C -0.530 4.530 19 H 0.074 0.926 20 C 0.073 3.927 21 N -0.897 5.897 22 Si 0.876 3.124 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.158 4.158 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.413 0.587 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.404 0.596 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.033 0.967 43 H 0.039 0.961 44 H 0.265 0.735 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.211 6.791 -11.060 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.299 3.701 4 O -0.400 6.400 5 N -0.316 5.316 6 C 0.065 3.935 7 C -0.168 4.168 8 C -0.101 4.101 9 C -0.150 4.150 10 C -0.165 4.165 11 C 0.103 3.897 12 N -0.335 5.335 13 C 0.401 3.599 14 O -0.441 6.441 15 N -0.341 5.341 16 C -0.063 4.063 17 C 0.109 3.891 18 C -0.569 4.569 19 H 0.092 0.908 20 C -0.129 4.129 21 N -0.535 5.535 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.181 4.181 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.241 0.759 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.065 6.572 -10.567 18.779 hybrid contribution 0.750 -0.007 0.868 1.147 sum -13.315 6.564 -9.700 17.733 Atomic orbital electron populations 1.21532 0.92830 1.01675 1.03400 1.21653 0.98784 0.93187 1.04816 1.20949 0.81614 0.92248 0.75285 1.90708 1.55059 1.46418 1.47784 1.43573 1.07871 1.07478 1.72652 1.17518 0.94930 0.84737 0.96287 1.20921 1.01544 0.93513 1.00799 1.20555 0.94966 0.95598 0.98959 1.19481 0.96961 0.95372 1.03198 1.20646 1.01491 0.92575 1.01785 1.17081 0.86951 0.92116 0.93525 1.42939 1.25958 1.33404 1.31200 1.15889 0.82180 0.82164 0.79640 1.90823 1.56539 1.32406 1.64369 1.47154 1.17336 1.35743 1.33893 1.21652 0.97787 0.89481 0.97388 1.19634 0.95230 0.91446 0.82785 1.21335 1.31501 1.08351 0.95696 0.90753 1.24840 0.94572 0.94665 0.98862 1.69887 1.34594 1.14475 1.34566 0.86856 0.78171 0.79099 0.85577 1.19876 1.21051 1.19053 1.21381 0.98670 0.96398 1.01670 0.91984 0.91959 0.91885 0.88464 0.88561 0.75139 0.85381 0.85767 0.91476 0.91340 0.92103 0.75914 0.93460 0.89902 0.92742 0.94958 0.94331 0.92526 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.16 0.34 -0.81 16 2 C -0.14 -1.21 6.42 -27.88 -0.18 -1.39 16 3 C 0.51 6.47 7.56 -10.99 -0.08 6.39 16 4 O -0.52 -8.41 13.72 5.55 0.08 -8.33 16 5 N -0.67 -8.66 5.34 -9.88 -0.05 -8.71 16 6 C 0.16 2.47 6.26 -83.73 -0.52 1.95 16 7 C -0.15 -2.13 8.65 -39.36 -0.34 -2.47 16 8 C -0.08 -1.05 9.69 -39.64 -0.38 -1.44 16 9 C -0.15 -1.94 5.90 -104.40 -0.62 -2.56 16 10 C -0.11 -1.05 9.45 36.01 0.34 -0.71 16 11 C 0.20 3.24 6.45 -83.71 -0.54 2.70 16 12 N -0.69 -11.02 4.86 -14.24 -0.07 -11.09 16 13 C 0.70 14.38 8.10 -86.92 -0.70 13.67 16 14 O -0.56 -13.73 12.95 5.29 0.07 -13.66 16 15 N -0.61 -12.23 2.86 -188.74 -0.54 -12.77 16 16 C 0.08 1.18 10.15 59.85 0.61 1.79 16 17 C 0.23 5.50 4.23 -5.19 -0.02 5.48 16 18 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 19 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 22 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 23 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 26 C -0.16 -2.76 8.66 -39.21 -0.34 -3.10 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.41 4.33 8.82 -40.82 -0.36 3.97 16 33 H 0.13 1.85 6.48 -52.49 -0.34 1.51 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.06 0.58 6.93 -51.93 -0.36 0.22 16 38 H 0.40 5.09 5.10 -40.82 -0.21 4.88 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.05 0.65 6.45 -51.93 -0.34 0.31 16 42 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 43 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.16 3.23 5.60 -52.48 -0.29 2.94 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -36.07 368.88 -8.16 -44.23 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.43 Total: 8.39 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -2.88 Total: 6.25 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.11 Total: -58.94 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.14 Total: -22.00 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.07 -8.16 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426572014.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.912 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds