Wall clock time and date at job start Tue Mar 31 2020 13:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46708 * 2 1 4 4 N 1.46499 * 109.47154 * 119.99779 * 2 1 3 5 5 C 1.34774 * 120.00145 * 154.99773 * 4 2 1 6 6 O 1.21542 * 119.99646 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00493 * 179.97438 * 5 4 2 8 8 C 1.34773 * 120.00557 * 180.02562 * 7 5 4 9 9 O 1.21235 * 119.99796 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00293 * 180.02562 * 8 7 5 11 11 H 1.09003 * 109.47077 * 59.99561 * 10 8 7 12 12 C 1.52997 * 109.47119 * 299.99851 * 10 8 7 13 13 N 1.46497 * 109.47096 * 179.97438 * 10 8 7 14 14 C 1.38865 * 119.99860 * 204.99663 * 13 10 8 15 15 C 1.39574 * 119.84117 * 180.02562 * 14 13 10 16 16 C 1.36335 * 120.15875 * 180.02562 * 15 14 13 17 17 C 1.40886 * 119.83947 * 0.25591 * 16 15 14 18 18 C 1.41135 * 120.15680 * 179.72157 * 17 16 15 19 19 H 1.08000 * 120.00157 * 150.12842 * 18 17 16 20 20 C 1.39876 * 119.99763 * 330.12558 * 18 17 16 21 21 N 1.30896 * 119.99615 * 161.72114 * 20 18 17 22 22 Si 1.86796 * 119.99980 * 341.72244 * 20 18 17 23 23 H 1.48499 * 109.47361 * 95.41642 * 22 20 18 24 24 H 1.48503 * 109.47035 * 215.41285 * 22 20 18 25 25 H 1.48499 * 109.47536 * 335.41174 * 22 20 18 26 26 C 1.40890 * 119.68505 * 359.44826 * 17 16 15 27 27 C 1.36332 * 119.83558 * 0.54681 * 26 17 16 28 28 H 1.08997 * 109.47367 * 299.99983 * 1 2 3 29 29 H 1.08997 * 109.47167 * 60.00131 * 1 2 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47367 * 240.00017 * 2 1 3 32 32 H 1.09005 * 109.46275 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47199 * 299.99849 * 3 2 1 34 34 H 1.08997 * 109.47192 * 59.99910 * 3 2 1 35 35 H 0.97003 * 119.99984 * 335.00479 * 4 2 1 36 36 H 0.97003 * 119.99637 * 0.02562 * 7 5 4 37 37 H 1.09007 * 109.47332 * 59.99744 * 12 10 8 38 38 H 1.08997 * 109.47308 * 180.02562 * 12 10 8 39 39 H 1.08998 * 109.47178 * 300.00211 * 12 10 8 40 40 H 0.97000 * 120.00425 * 25.00265 * 13 10 8 41 41 H 1.08001 * 119.91582 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.07802 * 179.97438 * 16 15 14 43 43 H 0.97008 * 120.00200 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.07563 * 180.27526 * 26 17 16 45 45 H 1.08003 * 119.91954 * 179.72201 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9373 -1.1986 0.2005 7 7 3.6898 -1.8940 2.2950 8 6 4.9120 -2.4622 2.2934 9 8 5.6072 -2.4018 1.3021 10 6 5.4143 -3.1725 3.5239 11 1 4.7419 -3.9948 3.7687 12 6 5.4653 -2.1895 4.6952 13 7 6.7572 -3.6996 3.2693 14 6 7.2233 -4.7904 3.9914 15 6 8.5035 -5.2896 3.7465 16 6 8.9675 -6.3605 4.4512 17 6 8.1492 -6.9668 5.4248 18 6 8.6205 -8.0794 6.1541 19 1 8.2724 -8.2513 7.1619 20 6 9.5384 -8.9595 5.5715 21 7 10.2434 -9.7638 6.3262 22 14 9.7582 -8.9870 3.7168 23 1 10.9033 -8.1193 3.3410 24 1 10.0241 -10.3782 3.2704 25 1 8.5222 -8.4855 3.0642 26 6 6.8604 -6.4536 5.6709 27 6 6.4096 -5.3820 4.9587 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.4622 -0.7387 1.9895 36 1 3.1337 -1.9420 3.0883 37 1 4.4658 -1.7976 4.8844 38 1 5.8290 -2.7031 5.5850 39 1 6.1375 -1.3672 4.4504 40 1 7.3209 -3.2867 2.5965 41 1 9.1281 -4.8263 2.9970 42 1 9.9581 -6.7460 4.2605 43 1 10.8803 -10.3740 5.9223 44 1 6.2295 -6.9107 6.4188 45 1 5.4202 -4.9903 5.1431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072878536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:10 Heat of formation + Delta-G solvation = -40.766554 kcal Electronic energy + Delta-G solvation = -26034.864002 eV Core-core repulsion = 22245.324690 eV Total energy + Delta-G solvation = -3789.539312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.44009 -39.24405 -38.10677 -36.33555 -35.39855 -34.83923 -33.21128 -31.76322 -30.93050 -29.83319 -28.48379 -27.68673 -25.42037 -24.20959 -22.78384 -21.63953 -21.10748 -20.51887 -20.21902 -19.15758 -17.69577 -17.18869 -16.58751 -16.08187 -15.97846 -15.71937 -15.03978 -14.85555 -14.73422 -14.32967 -14.07210 -13.51959 -13.49779 -13.29239 -13.06641 -12.81108 -12.65684 -12.54333 -12.45405 -12.37808 -12.13522 -11.97138 -11.86349 -11.59429 -11.43889 -11.01115 -10.89003 -10.69849 -10.30877 -10.24568 -9.96249 -9.73789 -9.54158 -9.53279 -9.21973 -8.78008 -7.79922 -6.78322 -6.67640 -4.19052 1.91649 2.02835 2.67943 2.77134 3.06343 3.21193 3.30582 3.42559 3.51457 4.03409 4.10464 4.33756 4.38043 4.58247 4.60821 4.77240 4.98074 5.08431 5.09990 5.19606 5.31565 5.42487 5.44965 5.52693 5.53755 5.68148 5.82782 5.87321 5.94425 6.03057 6.06480 6.10614 6.21246 6.51745 6.62473 6.86999 7.07628 7.20308 7.29214 7.35436 7.57344 7.83942 7.91342 8.01959 8.11470 8.25340 8.45524 8.52715 8.81344 8.97060 10.25671 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.032273 B = 0.002270 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.377727 B =12332.040441 C =12589.223123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 C -0.166 4.166 4 N -0.736 5.736 5 C 0.693 3.307 6 O -0.530 6.530 7 N -0.690 5.690 8 C 0.514 3.486 9 O -0.460 6.460 10 C 0.149 3.851 11 H 0.105 0.895 12 C -0.166 4.166 13 N -0.742 5.742 14 C 0.090 3.910 15 C -0.135 4.135 16 C -0.196 4.196 17 C 0.061 3.939 18 C -0.454 4.454 19 H 0.086 0.914 20 C 0.083 3.917 21 N -0.822 5.822 22 Si 0.907 3.093 23 H -0.273 1.273 24 H -0.294 1.294 25 H -0.246 1.246 26 C -0.171 4.171 27 C -0.149 4.149 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.409 0.591 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.398 0.602 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.281 0.719 44 H 0.101 0.899 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.737 18.870 -6.600 28.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 C -0.224 4.224 4 N -0.394 5.394 5 C 0.393 3.607 6 O -0.402 6.402 7 N -0.357 5.357 8 C 0.299 3.701 9 O -0.327 6.327 10 C 0.037 3.963 11 H 0.122 0.878 12 C -0.225 4.225 13 N -0.379 5.379 14 C -0.006 4.006 15 C -0.157 4.157 16 C -0.216 4.216 17 C 0.057 3.943 18 C -0.484 4.484 19 H 0.104 0.896 20 C -0.134 4.134 21 N -0.448 5.448 22 Si 0.734 3.266 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.169 1.169 26 C -0.191 4.191 27 C -0.170 4.170 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.231 0.769 36 H 0.245 0.755 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.233 0.767 41 H 0.112 0.888 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.593 18.724 -8.014 27.577 hybrid contribution -0.227 -0.009 -0.118 0.256 sum -18.820 18.715 -8.132 27.759 Atomic orbital electron populations 1.22085 0.93795 1.02819 1.03097 1.20886 0.93829 0.92809 0.87827 1.22218 1.02423 0.95651 1.02120 1.45409 1.16709 1.59490 1.17765 1.16188 0.82305 0.78683 0.83482 1.91074 1.55890 1.61336 1.31861 1.44215 1.19702 1.55107 1.16696 1.21353 0.79926 0.78060 0.90741 1.90814 1.54294 1.53490 1.34077 1.20453 0.88891 0.96497 0.90443 0.87776 1.22319 1.01685 0.99540 0.98987 1.43647 1.13655 1.35278 1.45360 1.17224 0.94380 0.91655 0.97364 1.19918 0.94463 0.99337 1.02016 1.20636 0.99435 0.98675 1.02839 1.17660 0.90913 0.93608 0.92087 1.19278 1.20631 1.06632 1.01814 0.89570 1.26063 0.92408 0.94197 1.00711 1.69737 1.17930 1.19004 1.38089 0.86388 0.80745 0.76259 0.83199 1.19936 1.22135 1.16889 1.20599 0.95904 0.99426 1.03183 1.20009 0.98024 0.99536 0.99462 0.91954 0.90651 0.91818 0.89171 0.91908 0.91451 0.92447 0.76873 0.75544 0.92259 0.89988 0.91942 0.76692 0.88752 0.88102 0.90871 0.88128 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 9.38 37.16 0.35 -0.24 16 2 C 0.15 1.00 3.18 -67.93 -0.22 0.78 16 3 C -0.17 -1.07 9.48 37.16 0.35 -0.72 16 4 N -0.74 -5.00 5.08 -58.68 -0.30 -5.30 16 5 C 0.69 7.91 8.47 -86.92 -0.74 7.18 16 6 O -0.53 -8.99 14.41 -18.48 -0.27 -9.26 16 7 N -0.69 -6.48 5.13 -15.78 -0.08 -6.56 16 8 C 0.51 6.90 7.16 -10.99 -0.08 6.82 16 9 O -0.46 -8.50 14.24 -18.21 -0.26 -8.76 16 10 C 0.15 1.87 2.67 -69.09 -0.18 1.68 16 11 H 0.10 1.21 6.45 -51.93 -0.33 0.88 16 12 C -0.17 -1.65 9.30 37.16 0.35 -1.30 16 13 N -0.74 -12.37 5.09 -53.16 -0.27 -12.64 16 14 C 0.09 1.80 6.65 -83.68 -0.56 1.24 16 15 C -0.14 -2.97 9.82 -39.77 -0.39 -3.36 16 16 C -0.20 -4.78 7.11 -39.27 -0.28 -5.05 16 17 C 0.06 1.54 5.10 -106.79 -0.55 1.00 16 18 C -0.45 -12.44 9.55 -37.87 -0.36 -12.80 16 19 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 20 C 0.08 2.23 5.40 -17.34 -0.09 2.14 16 21 N -0.82 -22.59 13.93 55.54 0.77 -21.82 16 22 Si 0.91 21.57 24.51 -169.99 -4.17 17.40 16 23 H -0.27 -6.34 6.70 56.52 0.38 -5.96 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.25 -6.00 6.87 56.52 0.39 -5.61 16 26 C -0.17 -3.85 9.74 -39.27 -0.38 -4.23 16 27 C -0.15 -2.91 8.74 -39.77 -0.35 -3.26 16 28 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.81 7.58 -51.93 -0.39 0.41 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.40 1.28 8.62 -40.82 -0.35 0.93 16 36 H 0.41 1.87 8.13 -40.82 -0.33 1.54 16 37 H 0.06 0.36 7.56 -51.93 -0.39 -0.03 16 38 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.40 6.83 7.79 -40.82 -0.32 6.51 16 41 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 42 H 0.10 2.49 4.73 -52.49 -0.25 2.24 16 43 H 0.28 7.06 8.30 -40.82 -0.34 6.72 16 44 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 45 H 0.09 1.51 6.04 -52.48 -0.32 1.20 16 LS Contribution 368.86 15.07 5.56 5.56 Total: -1.00 -35.12 368.86 -8.62 -43.74 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.48 Total: 7.76 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.13 Total: -10.13 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.12 Total: -46.32 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.53 Total: -18.02 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.17 Total: 17.40 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.12 -8.62 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072878536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.973 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds