Wall clock time and date at job start Tue Mar 31 2020 13:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46708 * 2 1 4 4 N 1.46499 * 109.47154 * 119.99779 * 2 1 3 5 5 C 1.34774 * 120.00145 * 154.99773 * 4 2 1 6 6 O 1.21542 * 119.99646 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00493 * 179.97438 * 5 4 2 8 8 C 1.34773 * 120.00557 * 180.02562 * 7 5 4 9 9 O 1.21235 * 119.99796 * 0.02562 * 8 7 5 10 10 C 1.50694 * 120.00293 * 180.02562 * 8 7 5 11 11 H 1.09003 * 109.47077 * 59.99561 * 10 8 7 12 12 C 1.52997 * 109.47119 * 299.99851 * 10 8 7 13 13 N 1.46497 * 109.47096 * 179.97438 * 10 8 7 14 14 C 1.38865 * 119.99860 * 204.99663 * 13 10 8 15 15 C 1.39574 * 119.84117 * 180.02562 * 14 13 10 16 16 C 1.36335 * 120.15875 * 180.02562 * 15 14 13 17 17 C 1.40886 * 119.83947 * 0.25591 * 16 15 14 18 18 C 1.41135 * 120.15680 * 179.72157 * 17 16 15 19 19 H 1.08000 * 120.00157 * 150.12842 * 18 17 16 20 20 C 1.39876 * 119.99763 * 330.12558 * 18 17 16 21 21 N 1.30896 * 119.99615 * 161.72114 * 20 18 17 22 22 Si 1.86796 * 119.99980 * 341.72244 * 20 18 17 23 23 H 1.48499 * 109.47361 * 95.41642 * 22 20 18 24 24 H 1.48503 * 109.47035 * 215.41285 * 22 20 18 25 25 H 1.48499 * 109.47536 * 335.41174 * 22 20 18 26 26 C 1.40890 * 119.68505 * 359.44826 * 17 16 15 27 27 C 1.36332 * 119.83558 * 0.54681 * 26 17 16 28 28 H 1.08997 * 109.47367 * 299.99983 * 1 2 3 29 29 H 1.08997 * 109.47167 * 60.00131 * 1 2 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47367 * 240.00017 * 2 1 3 32 32 H 1.09005 * 109.46275 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47199 * 299.99849 * 3 2 1 34 34 H 1.08997 * 109.47192 * 59.99910 * 3 2 1 35 35 H 0.97003 * 119.99984 * 335.00479 * 4 2 1 36 36 H 0.97003 * 119.99637 * 0.02562 * 7 5 4 37 37 H 1.09007 * 109.47332 * 59.99744 * 12 10 8 38 38 H 1.08997 * 109.47308 * 180.02562 * 12 10 8 39 39 H 1.08998 * 109.47178 * 300.00211 * 12 10 8 40 40 H 0.97000 * 120.00425 * 25.00265 * 13 10 8 41 41 H 1.08001 * 119.91582 * 0.02562 * 15 14 13 42 42 H 1.08001 * 120.07802 * 179.97438 * 16 15 14 43 43 H 0.97008 * 120.00200 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.07563 * 180.27526 * 26 17 16 45 45 H 1.08003 * 119.91954 * 179.72201 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.2403 -1.2591 1.1944 6 8 3.9373 -1.1986 0.2005 7 7 3.6898 -1.8940 2.2950 8 6 4.9120 -2.4622 2.2934 9 8 5.6072 -2.4018 1.3021 10 6 5.4143 -3.1725 3.5239 11 1 4.7419 -3.9948 3.7687 12 6 5.4653 -2.1895 4.6952 13 7 6.7572 -3.6996 3.2693 14 6 7.2233 -4.7904 3.9914 15 6 8.5035 -5.2896 3.7465 16 6 8.9675 -6.3605 4.4512 17 6 8.1492 -6.9668 5.4248 18 6 8.6205 -8.0794 6.1541 19 1 8.2724 -8.2513 7.1619 20 6 9.5384 -8.9595 5.5715 21 7 10.2434 -9.7638 6.3262 22 14 9.7582 -8.9870 3.7168 23 1 10.9033 -8.1193 3.3410 24 1 10.0241 -10.3782 3.2704 25 1 8.5222 -8.4855 3.0642 26 6 6.8604 -6.4536 5.6709 27 6 6.4096 -5.3820 4.9587 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.4622 -0.7387 1.9895 36 1 3.1337 -1.9420 3.0883 37 1 4.4658 -1.7976 4.8844 38 1 5.8290 -2.7031 5.5850 39 1 6.1375 -1.3672 4.4504 40 1 7.3209 -3.2867 2.5965 41 1 9.1281 -4.8263 2.9970 42 1 9.9581 -6.7460 4.2605 43 1 10.8803 -10.3740 5.9223 44 1 6.2295 -6.9107 6.4188 45 1 5.4202 -4.9903 5.1431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072878536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:09 Heat of formation + Delta-G solvation = -66.686883 kcal Electronic energy + Delta-G solvation = -26035.987992 eV Core-core repulsion = 22245.324690 eV Total energy + Delta-G solvation = -3790.663302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.40299 -40.39538 -39.59536 -37.19158 -36.74754 -35.89829 -35.01137 -32.76465 -32.05436 -31.56518 -30.01992 -28.09326 -26.54570 -25.72247 -24.00760 -22.96764 -22.11739 -21.84607 -21.36221 -20.09043 -19.23038 -18.71271 -17.69372 -17.32343 -17.15372 -16.62044 -16.59851 -16.00568 -15.59459 -15.48931 -15.17338 -15.05248 -14.82179 -14.57199 -14.17586 -14.07683 -13.93300 -13.85549 -13.50820 -13.33609 -13.17575 -13.05118 -12.81236 -12.59767 -12.48669 -12.33105 -12.05734 -12.02965 -11.91880 -11.81729 -11.41914 -11.32533 -10.99579 -10.83151 -10.51599 -10.21623 -9.55222 -8.76580 -8.35435 -6.16743 0.87790 0.90816 0.96221 1.20138 1.29729 1.42538 1.51500 2.15376 2.17686 2.61470 2.71305 2.89153 3.52918 3.62327 3.91873 4.00208 4.13054 4.14553 4.31235 4.32257 4.38181 4.68286 4.70283 4.76388 4.78486 4.84759 4.86034 4.95932 4.98437 5.05509 5.08319 5.27148 5.29964 5.32304 5.33322 5.43300 5.49719 5.53927 5.59363 5.79505 6.02540 6.23382 6.43891 6.48629 6.65678 6.87173 6.96115 7.01055 7.07676 7.32186 8.33465 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.032273 B = 0.002270 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.377727 B =12332.040441 C =12589.223123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 C -0.161 4.161 4 N -0.711 5.711 5 C 0.689 3.311 6 O -0.590 6.590 7 N -0.668 5.668 8 C 0.520 3.480 9 O -0.516 6.516 10 C 0.145 3.855 11 H 0.127 0.873 12 C -0.161 4.161 13 N -0.742 5.742 14 C 0.125 3.875 15 C -0.160 4.160 16 C -0.202 4.202 17 C 0.026 3.974 18 C -0.485 4.485 19 H 0.055 0.945 20 C 0.044 3.956 21 N -0.867 5.867 22 Si 0.959 3.041 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.256 1.256 26 C -0.167 4.167 27 C -0.146 4.146 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.028 0.972 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.419 0.581 36 H 0.435 0.565 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.396 0.604 41 H 0.110 0.890 42 H 0.090 0.910 43 H 0.287 0.713 44 H 0.111 0.889 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.530 21.636 -6.926 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 C -0.220 4.220 4 N -0.370 5.370 5 C 0.389 3.611 6 O -0.466 6.466 7 N -0.336 5.336 8 C 0.307 3.693 9 O -0.387 6.387 10 C 0.035 3.965 11 H 0.144 0.856 12 C -0.219 4.219 13 N -0.377 5.377 14 C 0.026 3.974 15 C -0.182 4.182 16 C -0.222 4.222 17 C 0.023 3.977 18 C -0.516 4.516 19 H 0.073 0.927 20 C -0.168 4.168 21 N -0.496 5.496 22 Si 0.784 3.216 23 H -0.193 1.193 24 H -0.210 1.210 25 H -0.179 1.179 26 C -0.186 4.186 27 C -0.168 4.168 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.257 0.743 36 H 0.276 0.724 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.231 0.769 41 H 0.128 0.872 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.129 0.871 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.503 21.544 -8.280 32.235 hybrid contribution 0.682 -0.521 -0.086 0.862 sum -21.821 21.024 -8.367 31.435 Atomic orbital electron populations 1.22027 0.90818 1.03397 1.04558 1.20998 0.95949 0.92348 0.86567 1.22179 1.00163 0.95898 1.03716 1.45264 1.15166 1.57736 1.18786 1.16453 0.83019 0.78668 0.82982 1.91051 1.57833 1.63505 1.34169 1.43835 1.18756 1.53699 1.17308 1.21481 0.80415 0.77437 0.90005 1.90814 1.56098 1.55761 1.36019 1.20805 0.86892 0.97799 0.90960 0.85555 1.22294 1.04517 0.98369 0.96754 1.43833 1.15450 1.34030 1.44418 1.17393 0.93321 0.90898 0.95837 1.20144 0.96021 0.99290 1.02771 1.20652 0.99070 0.99460 1.03053 1.17795 0.92646 0.93918 0.93339 1.19273 1.22563 1.08598 1.01168 0.92719 1.26641 0.92329 0.93941 1.03843 1.69776 1.19649 1.20813 1.39365 0.85582 0.80158 0.76640 0.79185 1.19342 1.21004 1.17945 1.20854 0.94909 0.99734 1.03146 1.20364 0.99900 0.98310 0.98188 0.89936 0.89766 0.91671 0.92124 0.95290 0.90187 0.90584 0.74265 0.72432 0.87469 0.90678 0.92775 0.76928 0.87184 0.89231 0.90325 0.87107 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.38 71.98 0.68 0.09 16 2 C 0.15 1.64 3.18 44.99 0.14 1.79 16 3 C -0.16 -1.81 9.48 71.98 0.68 -1.13 16 4 N -0.71 -7.61 5.08 -457.86 -2.33 -9.93 16 5 C 0.69 14.37 8.47 179.06 1.52 15.88 16 6 O -0.59 -20.05 14.41 18.91 0.27 -19.78 16 7 N -0.67 -10.18 5.13 -440.54 -2.26 -12.44 16 8 C 0.52 12.50 7.16 87.66 0.63 13.12 16 9 O -0.52 -18.62 14.24 19.87 0.28 -18.34 16 10 C 0.15 3.02 2.67 44.24 0.12 3.13 16 11 H 0.13 2.16 6.45 -2.39 -0.02 2.14 16 12 C -0.16 -2.37 9.30 71.98 0.67 -1.70 16 13 N -0.74 -22.42 5.09 -322.09 -1.64 -24.06 16 14 C 0.12 4.60 6.65 38.67 0.26 4.85 16 15 C -0.16 -6.79 9.82 22.15 0.22 -6.58 16 16 C -0.20 -9.89 7.11 22.47 0.16 -9.73 16 17 C 0.03 1.34 5.10 -21.27 -0.11 1.24 16 18 C -0.48 -27.84 9.55 23.38 0.22 -27.62 16 19 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 20 C 0.04 2.46 5.40 85.23 0.46 2.92 16 21 N -0.87 -50.01 13.93 21.82 0.30 -49.70 16 22 Si 0.96 45.80 24.51 68.60 1.68 47.48 16 23 H -0.27 -12.33 6.70 99.48 0.67 -11.66 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.26 -12.43 6.87 99.48 0.68 -11.74 16 26 C -0.17 -7.24 9.74 22.47 0.22 -7.02 16 27 C -0.15 -5.18 8.74 22.14 0.19 -4.99 16 28 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 1.07 7.58 -2.39 -0.02 1.06 16 32 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 35 H 0.42 0.81 8.62 -92.71 -0.80 0.01 16 36 H 0.44 1.63 8.13 -92.71 -0.75 0.88 16 37 H 0.11 0.58 7.56 -2.38 -0.02 0.56 16 38 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 39 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.40 12.77 7.79 -92.71 -0.72 12.05 16 41 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 42 H 0.09 4.50 4.73 -2.91 -0.01 4.49 16 43 H 0.29 15.04 8.30 -92.70 -0.77 14.27 16 44 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 45 H 0.14 3.69 6.04 -2.91 -0.02 3.67 16 Total: -1.00 -83.49 368.86 1.07 -82.42 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: -1.29 Total: 20.09 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 6.06 Total: -15.74 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -5.92 Total: -96.14 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: 0.56 Total: -38.12 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.68 Total: 47.48 kcal Total: -83.49 1.07 -82.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072878536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.731 kcal (2) G-P(sol) polarization free energy of solvation -83.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds