Wall clock time and date at job start Tue Mar 31 2020 12:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35678 * 117.00256 * 2 1 4 4 N 1.32277 * 119.67994 * 359.97438 * 3 2 1 5 5 C 1.31932 * 121.64577 * 179.97438 * 4 3 2 6 6 C 1.38092 * 120.83467 * 359.97438 * 5 4 3 7 7 C 1.38790 * 119.28693 * 359.97438 * 6 5 4 8 8 C 1.38419 * 118.48228 * 359.75657 * 7 6 5 9 9 C 1.50702 * 120.44361 * 180.24555 * 8 7 6 10 10 N 1.46503 * 109.46977 * 260.24979 * 9 8 7 11 11 C 1.34773 * 120.00175 * 180.02562 * 10 9 8 12 12 O 1.21589 * 119.99792 * 355.00179 * 11 10 9 13 13 N 1.34770 * 120.00133 * 175.01826 * 11 10 9 14 14 C 1.46926 * 120.63163 * 184.94305 * 13 11 10 15 15 C 1.52765 * 109.00770 * 233.58084 * 14 13 11 16 16 C 1.53039 * 109.37987 * 305.58284 * 15 14 13 17 17 C 1.50703 * 109.44845 * 181.25502 * 16 15 14 18 18 H 1.07997 * 120.00092 * 239.94335 * 17 16 15 19 19 C 1.37874 * 119.99800 * 59.93726 * 17 16 15 20 20 N 1.31516 * 120.00336 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99794 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47254 * 60.00582 * 21 19 17 23 23 H 1.48504 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47332 * 300.00483 * 21 19 17 25 25 C 1.53047 * 109.53801 * 61.24245 * 16 15 14 26 26 C 1.46932 * 120.62958 * 5.21511 * 13 11 10 27 27 H 1.08992 * 109.47271 * 300.00651 * 1 2 3 28 28 H 1.09003 * 109.46871 * 59.99984 * 1 2 3 29 29 H 1.08997 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.58899 * 179.97438 * 5 4 3 31 31 H 1.08006 * 120.36078 * 180.02562 * 6 5 4 32 32 H 1.07995 * 120.75773 * 180.02562 * 7 6 5 33 33 H 1.08998 * 109.47092 * 20.24400 * 9 8 7 34 34 H 1.08999 * 109.47075 * 140.24454 * 9 8 7 35 35 H 0.97003 * 119.99533 * 359.97438 * 10 9 8 36 36 H 1.09001 * 109.58377 * 353.41388 * 14 13 11 37 37 H 1.08993 * 109.58887 * 113.83624 * 14 13 11 38 38 H 1.08998 * 109.56397 * 185.55002 * 15 14 13 39 39 H 1.08996 * 109.35951 * 65.49689 * 15 14 13 40 40 H 1.08996 * 109.46193 * 301.21891 * 16 15 14 41 41 H 0.96999 * 120.00232 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.49674 * 178.68217 * 25 16 15 43 43 H 1.09004 * 109.52424 * 58.60063 * 25 16 15 44 44 H 1.09006 * 109.58223 * 246.15880 * 26 13 11 45 45 H 1.08994 * 109.58737 * 6.44502 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 7 1.3185 2.3142 -0.0005 5 6 1.8768 3.5096 0.0000 6 6 3.2506 3.6491 0.0016 7 6 4.0484 2.5133 0.0032 8 6 3.4322 1.2739 0.0084 9 6 4.2557 0.0118 0.0159 10 7 4.3288 -0.5317 -1.3426 11 6 5.0179 -1.6657 -1.5786 12 8 5.6537 -2.1881 -0.6835 13 7 5.0024 -2.2204 -2.8068 14 6 5.6584 -3.5117 -3.0533 15 6 6.6311 -3.3607 -4.2215 16 6 5.8867 -2.7924 -5.4319 17 6 6.8379 -2.6717 -6.5946 18 1 7.0242 -1.7065 -7.0418 19 6 7.4702 -3.7934 -7.0873 20 7 7.2429 -4.9689 -6.5429 21 14 8.6485 -3.6439 -8.5290 22 1 9.7644 -2.7344 -8.1640 23 1 9.1919 -4.9844 -8.8653 24 1 7.9259 -3.0941 -9.7040 25 6 5.3266 -1.4108 -5.0858 26 6 4.3344 -1.5423 -3.9261 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.2515 4.3902 -0.0009 31 1 3.6996 4.6314 0.0024 32 1 5.1253 2.5948 0.0049 33 1 5.2612 0.2361 0.3720 34 1 3.7916 -0.7210 0.6760 35 1 3.8806 -0.0758 -2.0721 36 1 6.2050 -3.8199 -2.1620 37 1 4.9074 -4.2617 -3.3013 38 1 7.0497 -4.3344 -4.4762 39 1 7.4349 -2.6818 -3.9370 40 1 5.0677 -3.4594 -5.7006 41 1 7.6875 -5.7581 -6.8898 42 1 4.8167 -0.9966 -5.9556 43 1 6.1425 -0.7497 -4.7934 44 1 3.4731 -2.1285 -4.2467 45 1 4.0055 -0.5525 -3.6098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540988310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:18 Heat of formation + Delta-G solvation = -26.967539 kcal Electronic energy + Delta-G solvation = -26899.547870 eV Core-core repulsion = 23110.606927 eV Total energy + Delta-G solvation = -3788.940942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.07102 -39.79071 -38.14376 -36.96993 -35.14074 -33.53476 -32.57302 -31.32735 -30.86367 -29.94461 -27.62088 -26.77607 -25.69475 -23.29839 -23.04559 -22.54886 -21.89964 -20.16141 -18.94278 -18.62531 -17.73595 -17.38256 -16.40944 -16.27514 -15.91736 -15.60749 -15.15634 -14.66741 -14.52051 -14.41530 -14.11111 -13.72016 -13.55147 -13.36871 -13.13180 -13.04775 -12.66191 -12.56491 -12.27205 -12.08570 -11.79393 -11.74040 -11.49444 -11.08237 -10.90275 -10.66307 -10.40981 -10.24301 -10.02980 -9.97512 -9.71351 -9.52451 -9.15580 -8.92486 -8.85154 -8.76641 -8.33853 -7.83243 -5.99294 -4.06123 0.70037 0.95101 2.81988 3.06497 3.31408 3.36594 3.38763 3.50421 3.63508 3.94156 4.32905 4.42991 4.49935 4.51399 4.64250 4.91605 5.03824 5.06985 5.14831 5.30234 5.37030 5.41441 5.42013 5.69977 5.73494 5.80582 5.89419 5.94513 6.08612 6.10208 6.31313 6.46796 6.54105 6.65320 6.69031 6.85817 6.93457 7.02046 7.19379 7.28900 7.48796 7.54689 7.74016 7.96714 8.09529 8.37343 8.43174 8.96880 9.01462 9.58692 11.06036 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021410 B = 0.002731 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.502970 B =10251.482918 C =10541.305326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.297 6.297 3 C 0.336 3.664 4 N -0.543 5.543 5 C 0.143 3.857 6 C -0.214 4.214 7 C -0.022 4.022 8 C -0.176 4.176 9 C 0.196 3.804 10 N -0.746 5.746 11 C 0.707 3.293 12 O -0.601 6.601 13 N -0.618 5.618 14 C 0.127 3.873 15 C -0.124 4.124 16 C 0.050 3.950 17 C -0.514 4.514 18 H 0.053 0.947 19 C 0.062 3.938 20 N -0.890 5.890 21 Si 0.891 3.109 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.278 1.278 25 C -0.123 4.123 26 C 0.115 3.885 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 15.388 13.363 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.203 6.203 3 C 0.157 3.843 4 N -0.266 5.266 5 C -0.013 4.013 6 C -0.234 4.234 7 C -0.048 4.048 8 C -0.180 4.180 9 C 0.071 3.929 10 N -0.405 5.405 11 C 0.409 3.591 12 O -0.481 6.481 13 N -0.354 5.354 14 C 0.005 3.995 15 C -0.162 4.162 16 C 0.032 3.968 17 C -0.552 4.552 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.204 1.204 25 C -0.162 4.162 26 C -0.009 4.009 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.177 0.823 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.230 0.770 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.761 14.400 14.002 23.796 hybrid contribution 1.008 0.634 -1.237 1.717 sum -11.753 15.034 12.766 22.959 Atomic orbital electron populations 1.22888 0.77127 1.03201 1.02314 1.86345 1.22889 1.24014 1.87083 1.19733 0.88832 0.84914 0.90848 1.67386 1.40777 0.98804 1.19663 1.22464 0.93004 0.93662 0.92134 1.22011 0.94869 0.99878 1.06628 1.21478 1.01004 0.90565 0.91761 1.20000 0.91318 0.96764 1.09873 1.19677 0.98389 0.90609 0.84220 1.45254 1.57869 1.27359 1.09970 1.15816 0.79857 0.80259 0.83204 1.90861 1.47853 1.64868 1.44477 1.47428 1.57890 1.23278 1.06804 1.21671 0.95887 0.81789 1.00144 1.21946 0.96745 1.04336 0.93209 1.18611 0.95218 0.89973 0.93006 1.21150 1.25656 0.93672 1.14756 0.92845 1.24960 0.96722 0.95400 0.96863 1.69835 1.43378 0.98463 1.41200 0.86683 0.81373 0.77105 0.82960 1.20358 1.21307 1.20367 1.22013 0.97385 1.01560 0.95222 1.21683 0.95996 0.95215 0.87966 0.92358 0.92221 0.88465 0.82299 0.84284 0.83747 0.90775 0.90559 0.77018 0.90527 0.92627 0.87851 0.94391 0.95496 0.92895 0.92246 0.92934 0.92004 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.30 -3.47 9.73 -18.74 -0.18 -3.66 16 3 C 0.34 3.80 7.47 -17.12 -0.13 3.68 16 4 N -0.54 -5.62 9.22 -13.33 -0.12 -5.74 16 5 C 0.14 1.12 11.18 -17.56 -0.20 0.92 16 6 C -0.21 -1.50 10.11 -39.43 -0.40 -1.90 16 7 C -0.02 -0.19 9.81 -39.31 -0.39 -0.57 16 8 C -0.18 -1.88 5.28 -104.32 -0.55 -2.43 16 9 C 0.20 2.48 5.49 -5.19 -0.03 2.45 16 10 N -0.75 -10.88 5.46 -66.41 -0.36 -11.25 16 11 C 0.71 13.23 8.29 -86.93 -0.72 12.51 16 12 O -0.60 -13.20 15.77 5.29 0.08 -13.12 16 13 N -0.62 -11.64 2.98 -178.76 -0.53 -12.17 16 14 C 0.13 2.64 6.41 -3.93 -0.03 2.61 16 15 C -0.12 -2.92 5.14 -26.83 -0.14 -3.06 16 16 C 0.05 1.21 2.07 -91.73 -0.19 1.02 16 17 C -0.51 -13.80 8.56 -34.44 -0.29 -14.09 16 18 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -24.94 11.31 55.43 0.63 -24.32 16 21 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 C -0.12 -2.43 5.30 -26.61 -0.14 -2.57 16 26 C 0.11 1.92 6.39 -3.71 -0.02 1.89 16 27 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.16 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.07 0.92 8.03 -51.93 -0.42 0.51 16 34 H 0.08 1.05 7.87 -51.93 -0.41 0.64 16 35 H 0.39 5.19 5.95 -40.82 -0.24 4.94 16 36 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 2.70 6.03 -51.93 -0.31 2.39 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.06 0.79 5.64 -51.93 -0.29 0.49 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -32.20 366.44 -8.90 -41.10 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.65 Total: 4.13 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.27 Total: 3.45 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.39 Total: -53.48 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.10 Total: -16.78 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.20 -8.90 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540988310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.137 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds