Wall clock time and date at job start Tue Mar 31 2020 12:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35690 * 116.99905 * 2 1 4 4 C 1.38890 * 119.62014 * 180.02562 * 3 2 1 5 5 C 1.39577 * 118.94145 * 179.70043 * 4 3 2 6 6 C 1.48166 * 120.88746 * 180.30000 * 5 4 3 7 7 O 1.21512 * 120.00490 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99653 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99819 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47021 * 274.99743 * 9 8 6 11 11 C 1.52997 * 109.47183 * 300.00257 * 10 9 8 12 12 C 1.53001 * 109.47099 * 300.00123 * 11 10 9 13 13 N 1.46499 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.36934 * 120.00353 * 84.99858 * 13 12 11 15 15 H 1.08003 * 120.00054 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00106 * 180.02562 * 14 13 12 17 17 N 1.31618 * 120.00047 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99878 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47292 * 59.99979 * 18 16 14 20 20 H 1.48498 * 109.47177 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47278 * 300.00128 * 18 16 14 22 22 C 1.52999 * 109.47513 * 59.99692 * 12 11 10 23 23 C 1.52995 * 109.47138 * 154.99710 * 9 8 6 24 24 C 1.39966 * 118.21761 * 0.27329 * 5 4 3 25 25 C 1.37970 * 119.13670 * 0.02562 * 24 5 4 26 26 N 1.31914 * 120.97746 * 359.97438 * 25 24 5 27 27 H 1.08999 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47034 * 299.99549 * 1 2 3 29 29 H 1.08997 * 109.47335 * 59.99556 * 1 2 3 30 30 H 1.08002 * 120.53211 * 359.97438 * 4 3 2 31 31 H 0.96993 * 119.99839 * 359.97438 * 8 6 5 32 32 H 1.08997 * 109.46966 * 34.99528 * 9 8 6 33 33 H 1.09004 * 109.46901 * 60.00074 * 10 9 8 34 34 H 1.09000 * 109.47292 * 179.97438 * 10 9 8 35 35 H 1.08996 * 109.47368 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.47243 * 59.99680 * 11 10 9 37 37 H 1.09000 * 109.46711 * 299.99883 * 12 11 10 38 38 H 0.97001 * 119.99698 * 264.99409 * 13 12 11 39 39 H 0.96998 * 119.99959 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.47487 * 179.97438 * 22 12 11 41 41 H 1.09009 * 109.46436 * 60.00143 * 22 12 11 42 42 H 1.08996 * 109.47399 * 179.97438 * 23 9 8 43 43 H 1.08999 * 109.47316 * 300.00249 * 23 9 8 44 44 H 1.08002 * 120.42855 * 179.97438 * 24 5 4 45 45 H 1.08000 * 119.51528 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0513 2.5236 -0.0069 6 6 5.5283 2.6415 -0.0144 7 8 6.2178 1.6410 -0.0146 8 7 6.1070 3.8588 -0.0200 9 6 7.5674 3.9754 -0.0268 10 6 8.0922 3.8943 1.4081 11 6 7.4933 5.0335 2.2353 12 6 7.8948 6.3759 1.6206 13 7 7.3219 7.4668 2.4130 14 6 7.9806 7.9267 3.5219 15 1 8.9223 7.4850 3.8126 16 6 7.4375 8.9600 4.2730 17 7 6.2897 9.4981 3.9191 18 14 8.3358 9.5869 5.7861 19 1 9.6744 10.0950 5.3921 20 1 7.5523 10.6848 6.4075 21 1 8.4945 8.4790 6.7621 22 6 7.3701 6.4571 0.1857 23 6 7.9689 5.3177 -0.6416 24 6 3.2393 3.6636 -0.0066 25 6 1.8680 3.5116 0.0004 26 7 1.3178 2.3127 0.0064 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0231 0.3683 -0.0005 31 1 5.5566 4.6574 -0.0195 32 1 7.9939 3.1638 -0.6161 33 1 7.8061 2.9380 1.8460 34 1 9.1787 3.9806 1.4030 35 1 7.8675 4.9760 3.2574 36 1 6.4068 4.9467 2.2404 37 1 8.9813 6.4627 1.6155 38 1 6.4760 7.8633 2.1521 39 1 5.9100 10.2199 4.4442 40 1 7.6557 7.4135 -0.2521 41 1 6.2835 6.3702 0.1908 42 1 9.0553 5.4047 -0.6463 43 1 7.5950 5.3755 -1.6638 44 1 3.6805 4.6494 -0.0110 45 1 1.2357 4.3871 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026519621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:31 Heat of formation + Delta-G solvation = -32.389601 kcal Electronic energy + Delta-G solvation = -26656.175584 eV Core-core repulsion = 22866.999523 eV Total energy + Delta-G solvation = -3789.176061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.11213 -40.01446 -38.31732 -37.68750 -34.75470 -33.28187 -32.50217 -31.14552 -30.51799 -30.47233 -27.78436 -27.55611 -24.80472 -23.63671 -23.56595 -22.28232 -21.36202 -20.88057 -19.03655 -18.93282 -17.53241 -17.15925 -16.59192 -16.31465 -16.10402 -15.54956 -15.45434 -15.07188 -14.55968 -14.43501 -14.20433 -14.01201 -13.74939 -13.61583 -13.44391 -13.14449 -12.50107 -12.40767 -12.29096 -12.00158 -11.92161 -11.67738 -11.51823 -11.05404 -10.87954 -10.86639 -10.47747 -10.37821 -10.23473 -10.19480 -10.15518 -9.85827 -9.75941 -9.60358 -9.03433 -8.86408 -8.83828 -6.97899 -5.79207 -3.07478 0.45699 0.85794 2.63321 2.74565 3.12898 3.42278 3.47175 3.47609 3.59081 4.00278 4.35943 4.56090 4.67013 4.74245 4.78114 4.92120 4.98951 5.01784 5.02681 5.07832 5.31661 5.40468 5.46322 5.49930 5.53910 5.65424 5.69930 5.76609 5.82055 5.87233 5.94210 6.00619 6.03181 6.21911 6.30529 6.42224 6.46888 6.59141 6.70720 6.89867 6.94317 7.09585 7.39692 7.49477 7.68006 8.05856 8.39873 9.50945 10.08613 10.42939 11.43481 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002904 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.716265 B = 9639.877560 C =10711.552053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.316 3.684 4 C -0.133 4.133 5 C -0.050 4.050 6 C 0.559 3.441 7 O -0.531 6.531 8 N -0.705 5.705 9 C 0.148 3.852 10 C -0.129 4.129 11 C -0.133 4.133 12 C 0.177 3.823 13 N -0.725 5.725 14 C -0.237 4.237 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.178 4.178 25 C 0.140 3.860 26 N -0.528 5.528 27 H 0.096 0.904 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.154 0.846 31 H 0.402 0.598 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.382 0.618 39 H 0.255 0.745 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.144 0.856 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -14.636 -12.390 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.213 6.213 3 C 0.137 3.863 4 C -0.155 4.155 5 C -0.061 4.061 6 C 0.344 3.656 7 O -0.408 6.408 8 N -0.358 5.358 9 C 0.044 3.956 10 C -0.168 4.168 11 C -0.173 4.173 12 C 0.067 3.933 13 N -0.365 5.365 14 C -0.369 4.369 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.163 4.163 23 C -0.161 4.161 24 C -0.199 4.199 25 C -0.015 4.015 26 N -0.252 5.252 27 H 0.115 0.885 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.172 0.828 31 H 0.240 0.760 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.216 0.784 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.162 0.838 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.208 -15.621 -12.235 21.473 hybrid contribution 0.420 1.148 0.959 1.554 sum -7.788 -14.472 -11.277 19.931 Atomic orbital electron populations 1.22884 0.76996 1.03061 1.02570 1.86258 1.23064 1.24192 1.87794 1.19681 0.88999 0.84876 0.92755 1.21111 0.91880 0.99115 1.03397 1.20182 0.93997 0.93306 0.98634 1.18041 0.86649 0.83946 0.76947 1.90772 1.64111 1.36459 1.49491 1.46046 1.08454 1.07656 1.73626 1.21056 0.78675 0.98333 0.97542 1.21940 1.00595 0.99642 0.94666 1.22227 1.00231 0.95364 0.99499 1.20231 0.96624 0.87795 0.88619 1.42401 1.25654 1.38584 1.29856 1.19191 1.02792 1.12977 1.01902 0.91299 1.24721 0.97379 0.99303 0.99548 1.69638 1.19057 1.28480 1.41096 0.86296 0.78745 0.78239 0.83083 1.21286 1.21723 1.21321 1.21824 0.99749 0.97877 0.96886 1.21811 1.02038 0.93502 0.98778 1.22228 0.95040 0.99172 1.03475 1.22407 0.92609 0.93643 0.92874 1.67204 1.41256 0.98946 1.17791 0.88526 0.92139 0.92218 0.82840 0.76031 0.89640 0.92203 0.91189 0.92058 0.92889 0.93476 0.78430 0.93505 0.91316 0.92790 0.90134 0.91681 0.83807 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.37 10.47 -18.77 -0.20 -3.57 16 3 C 0.32 3.75 7.49 -17.16 -0.13 3.62 16 4 C -0.13 -1.63 9.61 -38.84 -0.37 -2.00 16 5 C -0.05 -0.60 5.91 -104.67 -0.62 -1.22 16 6 C 0.56 7.52 7.76 -12.18 -0.09 7.43 16 7 O -0.53 -8.71 16.10 5.36 0.09 -8.62 16 8 N -0.71 -8.44 4.19 -54.65 -0.23 -8.67 16 9 C 0.15 1.82 2.78 -67.93 -0.19 1.63 16 10 C -0.13 -1.83 5.60 -26.73 -0.15 -1.98 16 11 C -0.13 -2.26 5.34 -26.73 -0.14 -2.41 16 12 C 0.18 3.23 2.77 -67.93 -0.19 3.04 16 13 N -0.72 -17.19 5.12 -53.43 -0.27 -17.47 16 14 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 15 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -27.54 13.06 55.49 0.72 -26.81 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 C -0.12 -1.77 5.22 -26.73 -0.14 -1.91 16 23 C -0.12 -1.39 5.61 -26.73 -0.15 -1.54 16 24 C -0.18 -1.76 9.61 -39.03 -0.38 -2.13 16 25 C 0.14 1.34 11.17 -17.61 -0.20 1.14 16 26 N -0.53 -5.94 9.18 -13.38 -0.12 -6.06 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 30 H 0.15 1.86 7.74 -52.49 -0.41 1.45 16 31 H 0.40 4.26 5.00 -40.82 -0.20 4.06 16 32 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.93 7.60 -51.93 -0.39 0.53 16 37 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.38 9.60 7.80 -40.82 -0.32 9.28 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.72 6.51 -51.92 -0.34 0.38 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.14 1.13 6.53 -52.49 -0.34 0.79 16 45 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -32.45 367.92 -8.02 -40.47 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.59 Total: 10.07 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.94 Total: -1.99 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.10 Total: -59.01 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.11 Total: -12.19 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -8.02 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026519621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.084 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds