Wall clock time and date at job start Tue Mar 31 2020 13:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 119.99961 * 2 1 4 4 H 1.48502 * 109.46806 * 274.45521 * 3 2 1 5 5 H 1.48504 * 109.47168 * 34.45010 * 3 2 1 6 6 H 1.48497 * 109.47724 * 154.45358 * 3 2 1 7 7 C 1.38806 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00203 * 164.49306 * 7 2 1 9 9 N 1.36943 * 120.00036 * 344.49847 * 7 2 1 10 10 C 1.47004 * 121.37727 * 335.97653 * 9 7 2 11 11 C 1.50318 * 109.16539 * 222.97044 * 10 9 7 12 12 C 1.29450 * 123.65495 * 349.01672 * 11 10 9 13 13 C 1.50696 * 117.69740 * 180.57514 * 12 11 10 14 14 C 1.52998 * 109.47271 * 95.00340 * 13 12 11 15 15 N 1.46497 * 109.47323 * 180.02562 * 14 13 12 16 16 C 1.34779 * 120.00196 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99586 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00144 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.46930 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.46930 * 179.97438 * 19 18 16 21 21 C 1.35359 * 126.91532 * 274.68560 * 20 19 18 22 22 N 1.33775 * 106.49858 * 179.90372 * 21 20 19 23 23 N 1.28638 * 108.88452 * 0.36968 * 22 21 20 24 24 N 1.28720 * 110.17690 * 359.76376 * 23 22 21 25 25 H 0.96993 * 125.86196 * 180.02562 * 24 23 22 26 26 C 1.49970 * 124.60934 * 0.85809 * 12 11 10 27 27 C 1.47338 * 121.37483 * 155.99588 * 9 7 2 28 28 H 0.96999 * 119.99965 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.52265 * 103.05841 * 10 9 7 30 30 H 1.08999 * 109.51718 * 342.87378 * 10 9 7 31 31 H 1.08002 * 118.17192 * 168.99660 * 11 10 9 32 32 H 1.09001 * 109.47478 * 215.00086 * 13 12 11 33 33 H 1.08996 * 109.47408 * 335.00138 * 13 12 11 34 34 H 1.09003 * 109.46931 * 299.99775 * 14 13 12 35 35 H 1.08996 * 109.47069 * 59.99591 * 14 13 12 36 36 H 0.96999 * 119.99785 * 359.97438 * 15 14 13 37 37 H 1.09001 * 109.47478 * 299.99918 * 18 16 15 38 38 H 1.09003 * 109.47069 * 60.00170 * 18 16 15 39 39 H 1.08994 * 109.47685 * 299.99952 * 19 18 16 40 40 H 1.09003 * 109.46948 * 60.00289 * 19 18 16 41 41 H 1.08002 * 126.74866 * 0.03785 * 21 20 19 42 42 H 1.09003 * 109.31537 * 101.29368 * 26 12 11 43 43 H 1.08993 * 109.31856 * 220.71968 * 26 12 11 44 44 H 1.09000 * 109.78144 * 237.78886 * 27 9 7 45 45 H 1.08997 * 109.78103 * 358.59573 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4035 2.1007 -1.3959 5 1 1.4978 2.6237 0.7920 6 1 3.5917 1.4149 0.6037 7 6 2.0103 -1.2021 0.0005 8 1 3.0608 -1.2192 -0.2495 9 7 1.3630 -2.3663 0.3180 10 6 0.1447 -2.3649 1.1407 11 6 0.2252 -3.4817 2.1436 12 6 1.1209 -4.4156 2.1070 13 6 1.0687 -5.4784 3.1741 14 6 0.2902 -6.6876 2.6520 15 7 0.2389 -7.7206 3.6896 16 6 -0.4006 -8.8830 3.4523 17 8 -0.9341 -9.0736 2.3799 18 6 -0.4529 -9.9457 4.5194 19 6 -1.2326 -11.1544 3.9977 20 6 -1.2843 -12.2174 5.0645 21 6 -0.3505 -13.1650 5.3140 22 7 -0.8073 -13.8868 6.3436 23 7 -1.9518 -13.4220 6.7026 24 7 -2.2763 -12.4203 5.9622 25 1 -3.0917 -11.9002 6.0354 26 6 2.2105 -4.5111 1.0810 27 6 1.8590 -3.6722 -0.1505 28 1 -0.4850 0.8400 0.0004 29 1 -0.7264 -2.5110 0.5020 30 1 0.0590 -1.4120 1.6628 31 1 -0.5047 -3.5062 2.9393 32 1 2.0826 -5.7834 3.4332 33 1 0.5717 -5.0808 4.0590 34 1 -0.7238 -6.3827 2.3930 35 1 0.7872 -7.0852 1.7672 36 1 0.6652 -7.5679 4.5474 37 1 0.5610 -10.2511 4.7781 38 1 -0.9495 -9.5479 5.4044 39 1 -2.2465 -10.8488 3.7393 40 1 -0.7364 -11.5524 3.1125 41 1 0.5811 -13.3087 4.7869 42 1 3.1436 -4.1468 1.5110 43 1 2.3361 -5.5523 0.7842 44 1 1.0846 -4.1746 -0.7301 45 1 2.7474 -3.5301 -0.7659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161248607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:26 Heat of formation + Delta-G solvation = 81.192150 kcal Electronic energy + Delta-G solvation = -25208.893166 eV Core-core repulsion = 21456.935131 eV Total energy + Delta-G solvation = -3751.958035 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.175 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.75689 -40.02018 -37.97374 -35.66672 -34.85645 -33.66003 -33.58085 -31.51477 -30.55644 -29.84150 -28.69746 -26.00319 -24.81744 -23.42822 -23.04480 -22.52758 -22.03425 -21.05378 -20.50196 -18.74483 -17.66065 -17.39202 -16.58944 -16.25093 -16.21258 -15.60463 -15.18949 -14.91420 -14.75301 -14.50937 -14.15069 -13.70252 -13.68254 -13.48444 -13.28455 -12.88527 -12.65564 -12.29972 -12.18353 -12.05119 -11.84922 -11.61096 -11.45370 -11.29343 -11.05473 -11.04369 -10.93457 -10.73973 -10.38113 -10.32407 -10.14946 -9.83335 -9.64238 -9.55576 -9.26262 -8.67490 -7.95997 -6.74269 -5.80519 -3.19133 1.05789 2.09337 2.25262 2.34995 2.74924 3.06170 3.36235 3.43287 3.45529 3.93476 4.15947 4.31663 4.44157 4.48228 4.64914 4.72452 4.94287 4.96234 5.04519 5.12970 5.23024 5.37965 5.40734 5.43047 5.51971 5.59617 5.67090 5.74660 5.94919 5.98910 6.10715 6.17317 6.24690 6.34268 6.36765 6.52671 6.76467 6.88174 7.19760 7.21859 7.30492 7.37988 7.73354 7.85353 7.94310 7.98614 8.37543 9.19026 9.81953 10.40442 11.29918 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.047276 B = 0.001686 C = 0.001674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.129120 B =16607.168567 C =16724.574967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.002 4.002 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.196 3.804 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.091 4.091 14 C 0.123 3.877 15 N -0.729 5.729 16 C 0.510 3.490 17 O -0.539 6.539 18 C -0.137 4.137 19 C -0.033 4.033 20 C -0.007 4.007 21 C -0.046 4.046 22 N -0.266 5.266 23 N -0.083 5.083 24 N -0.389 5.389 25 H 0.448 0.552 26 C -0.091 4.091 27 C 0.143 3.857 28 H 0.253 0.747 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.106 0.894 41 H 0.192 0.808 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.789 -21.016 11.909 24.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.071 3.929 11 C -0.165 4.165 12 C -0.144 4.144 13 C -0.129 4.129 14 C 0.000 4.000 15 N -0.380 5.380 16 C 0.296 3.704 17 O -0.416 6.416 18 C -0.178 4.178 19 C -0.073 4.073 20 C -0.141 4.141 21 C -0.203 4.203 22 N -0.133 5.133 23 N -0.063 5.063 24 N -0.110 5.110 25 H 0.294 0.706 26 C -0.130 4.130 27 C 0.016 3.984 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.234 0.766 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.209 0.791 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.573 -21.986 12.300 25.324 hybrid contribution 0.358 2.050 -0.283 2.100 sum -2.216 -19.936 12.017 23.383 Atomic orbital electron populations 1.70021 1.05179 1.25437 1.54847 1.24986 0.95385 0.98281 1.01320 0.86249 0.79086 0.83679 0.77598 1.21487 1.21594 1.20508 1.19184 0.92214 0.84403 1.41675 0.91405 1.44127 1.29272 1.01134 1.57319 1.19705 0.88669 0.94757 0.89766 1.23122 0.96646 0.97346 0.99400 1.20224 0.99383 0.96650 0.98183 1.20905 0.99985 0.94158 0.97871 1.21466 1.01270 0.86822 0.90426 1.46133 1.56475 1.16777 1.18655 1.20498 0.78330 0.82855 0.88757 1.90751 1.45400 1.79475 1.25979 1.21669 1.03474 0.94352 0.98330 1.19883 1.03043 0.90247 0.94167 1.22345 0.91315 1.02713 0.97745 1.23491 1.02288 0.95482 0.99035 1.75131 1.03115 1.23047 1.11989 1.78326 1.10967 1.00448 1.16559 1.45176 1.18666 1.24127 1.23047 0.70632 1.20759 0.96594 0.98986 0.96670 1.20953 0.97356 0.87221 0.92858 0.93649 0.94420 0.89145 0.89122 0.91439 0.91584 0.91253 0.91148 0.76630 0.88025 0.88870 0.89344 0.87610 0.79095 0.91944 0.92891 0.95866 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.13 11.08 55.49 0.61 -25.51 16 2 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 3 Si 0.90 21.53 29.58 -169.99 -5.03 16.50 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.69 9.71 -15.06 -0.15 -6.84 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -14.86 3.01 -173.68 -0.52 -15.38 16 10 C 0.20 4.64 5.23 -5.10 -0.03 4.61 16 11 C -0.15 -2.72 9.47 -35.78 -0.34 -3.06 16 12 C -0.14 -2.36 5.11 -100.99 -0.52 -2.87 16 13 C -0.09 -1.08 5.32 -27.89 -0.15 -1.22 16 14 C 0.12 1.40 5.66 -4.04 -0.02 1.38 16 15 N -0.73 -6.06 5.56 -60.30 -0.33 -6.39 16 16 C 0.51 4.51 7.83 -10.99 -0.09 4.42 16 17 O -0.54 -7.12 15.98 5.56 0.09 -7.03 16 18 C -0.14 -0.63 5.68 -27.88 -0.16 -0.79 16 19 C -0.03 -0.16 5.07 -27.88 -0.14 -0.30 16 20 C -0.01 -0.04 6.56 -82.09 -0.54 -0.58 16 21 C -0.05 -0.33 11.99 -17.73 -0.21 -0.54 16 22 N -0.27 -2.71 12.41 30.24 0.38 -2.33 16 23 N -0.08 -0.77 13.38 60.35 0.81 0.03 16 24 N -0.39 -2.24 6.98 33.54 0.23 -2.01 16 25 H 0.45 1.03 8.96 -190.40 -1.71 -0.68 16 26 C -0.09 -1.55 5.94 -28.18 -0.17 -1.72 16 27 C 0.14 2.95 6.58 -3.53 -0.02 2.93 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 2.38 6.41 -51.93 -0.33 2.04 16 31 H 0.09 1.49 7.73 -52.49 -0.41 1.08 16 32 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 33 H 0.07 0.72 7.78 -51.93 -0.40 0.32 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 36 H 0.40 2.16 8.47 -40.82 -0.35 1.81 16 37 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.09 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.11 0.56 8.10 -51.93 -0.42 0.14 16 41 H 0.19 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -34.78 375.39 -8.94 -43.72 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -8.22 Total: -2.53 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.61 Total: -4.72 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 1.17 Total: -51.59 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: 0.09 Total: -7.03 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.78 -8.94 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161248607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.911 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds