Wall clock time and date at job start Tue Mar 31 2020 12:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50217 * 2 1 4 4 C 1.53125 * 109.50328 * 120.07536 * 2 1 3 5 5 C 1.53199 * 109.11380 * 62.32499 * 4 2 1 6 6 C 1.53039 * 109.29848 * 57.63112 * 5 4 2 7 7 H 1.09002 * 109.46147 * 60.83688 * 6 5 4 8 8 C 1.50707 * 109.46007 * 180.80198 * 6 5 4 9 9 C 1.38236 * 119.99696 * 79.78082 * 8 6 5 10 10 C 1.38238 * 119.99414 * 179.76319 * 9 8 6 11 11 C 1.38236 * 120.00294 * 0.48523 * 10 9 8 12 12 C 1.38241 * 120.00005 * 359.79272 * 11 10 9 13 13 C 1.38233 * 119.99643 * 359.94955 * 12 11 10 14 14 N 1.46839 * 109.52185 * 300.81880 * 6 5 4 15 15 C 1.46910 * 111.00003 * 185.83876 * 14 6 5 16 16 C 1.52997 * 109.47303 * 169.74070 * 15 14 6 17 17 C 1.53000 * 109.47154 * 179.97438 * 16 15 14 18 18 S 1.80999 * 109.46967 * 180.02562 * 17 16 15 19 19 C 1.76202 * 99.99722 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00444 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99989 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99967 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47131 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47183 * 119.99796 * 23 21 19 26 26 H 1.48501 * 109.47139 * 239.99870 * 23 21 19 27 27 C 1.46840 * 111.19959 * 61.74311 * 14 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00276 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00258 * 1 2 3 31 31 H 1.09004 * 109.52368 * 182.19222 * 4 2 1 32 32 H 1.09004 * 109.51961 * 302.38200 * 4 2 1 33 33 H 1.09003 * 109.49552 * 297.68265 * 5 4 2 34 34 H 1.09002 * 109.52520 * 177.59572 * 5 4 2 35 35 H 1.07991 * 120.00048 * 359.97438 * 9 8 6 36 36 H 1.08003 * 119.99367 * 180.25173 * 10 9 8 37 37 H 1.07995 * 120.00053 * 179.76052 * 11 10 9 38 38 H 1.07993 * 119.99929 * 179.97438 * 12 11 10 39 39 H 1.08005 * 120.00026 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47032 * 289.74606 * 15 14 6 41 41 H 1.09007 * 109.46352 * 49.74431 * 15 14 6 42 42 H 1.08998 * 109.47514 * 300.00240 * 16 15 14 43 43 H 1.09007 * 109.46683 * 60.00196 * 16 15 14 44 44 H 1.08998 * 109.47119 * 300.00497 * 17 16 15 45 45 H 1.09007 * 109.46414 * 60.00413 * 17 16 15 46 46 H 0.97002 * 119.99782 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.46549 * 178.23505 * 27 14 6 48 48 H 1.08999 * 109.45505 * 58.26961 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 1.2491 5 6 1.5749 -2.1821 1.2101 6 6 2.0846 -2.8419 -0.0733 7 1 3.1743 -2.8195 -0.0851 8 6 1.6114 -4.2718 -0.1249 9 6 0.3199 -4.5583 -0.5262 10 6 -0.1126 -5.8703 -0.5782 11 6 0.7431 -6.8949 -0.2193 12 6 2.0327 -6.6080 0.1876 13 6 2.4669 -5.2964 0.2345 14 7 1.5676 -2.1130 -1.2385 15 6 1.9224 -2.7987 -2.4883 16 6 1.1606 -2.1630 -3.6529 17 6 1.5306 -2.8767 -4.9546 18 16 0.6298 -2.1241 -6.3324 19 6 1.2274 -3.1110 -7.6641 20 1 1.9394 -3.9005 -7.4741 21 6 0.7839 -2.8732 -8.9576 22 7 -0.0835 -1.9106 -9.1894 23 14 1.4180 -3.9190 -10.3696 24 1 2.3765 -4.9262 -9.8480 25 1 0.2786 -4.6125 -11.0225 26 1 2.1024 -3.0503 -11.3606 27 6 2.0409 -0.7230 -1.2482 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.1305 -0.6896 1.2693 32 1 1.6441 -0.2366 2.1399 33 1 0.4856 -2.2165 1.2291 34 1 1.9710 -2.7144 2.0749 35 1 -0.3499 -3.7575 -0.8024 36 1 -1.1203 -6.0944 -0.8956 37 1 0.4039 -7.9196 -0.2562 38 1 2.7011 -7.4084 0.4684 39 1 3.4743 -5.0721 0.5527 40 1 2.9945 -2.7062 -2.6618 41 1 1.6562 -3.8531 -2.4124 42 1 0.0884 -2.2555 -3.4794 43 1 1.4267 -1.1086 -3.7287 44 1 2.6027 -2.7838 -5.1279 45 1 1.2647 -3.9312 -4.8790 46 1 -0.3937 -1.7447 -10.0934 47 1 1.6670 -0.2182 -2.1390 48 1 3.1308 -0.7107 -1.2545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000512196708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:39 Heat of formation + Delta-G solvation = 3.165532 kcal Electronic energy + Delta-G solvation = -24741.570405 eV Core-core repulsion = 21500.229345 eV Total energy + Delta-G solvation = -3241.341060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.167 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38066 -38.45038 -35.23354 -33.37974 -32.40507 -31.43812 -30.90873 -29.83116 -26.65932 -26.25645 -25.43856 -23.42131 -23.29039 -22.53400 -20.80138 -20.58855 -18.72441 -17.45304 -17.00355 -16.17778 -15.55394 -15.20561 -14.96246 -14.78125 -14.61214 -14.18697 -14.08874 -14.03922 -13.72741 -13.34035 -13.30460 -12.91764 -12.74528 -12.57541 -12.17319 -12.09540 -11.81554 -11.54691 -11.33152 -11.28669 -11.09494 -11.05862 -10.99160 -10.76113 -10.75279 -10.64684 -10.47421 -10.30065 -10.05955 -9.47119 -9.03771 -8.93017 -8.69697 -8.26894 -8.24286 -6.48645 -6.20128 -3.89553 1.29723 1.39062 3.22515 3.24173 3.31609 3.56017 3.73049 3.92446 4.25575 4.48524 4.64524 4.80836 4.85238 4.94129 4.96628 5.05640 5.14337 5.15958 5.17401 5.33331 5.36923 5.43046 5.45650 5.48715 5.56334 5.61958 5.65720 5.70380 5.80419 5.80843 5.82348 5.85652 5.95666 5.98135 6.04001 6.07148 6.10160 6.15105 6.25672 6.39904 6.42292 6.46439 6.51450 6.57575 6.66388 6.82081 6.96898 7.16541 7.18985 7.63790 8.39927 9.26452 10.88123 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003248 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.090496 B = 8619.537780 C =10177.996395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.070 0.930 4 C -0.116 4.116 5 C -0.106 4.106 6 C 0.126 3.874 7 H 0.044 0.956 8 C -0.078 4.078 9 C -0.089 4.089 10 C -0.123 4.123 11 C -0.123 4.123 12 C -0.124 4.124 13 C -0.119 4.119 14 N -0.525 5.525 15 C 0.057 3.943 16 C -0.091 4.091 17 C -0.111 4.111 18 S -0.132 6.132 19 C -0.515 4.515 20 H 0.072 0.928 21 C 0.071 3.929 22 N -0.870 5.870 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.056 3.944 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.028 0.972 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.266 0.734 47 H 0.085 0.915 48 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 -2.388 23.922 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.088 0.912 4 C -0.153 4.153 5 C -0.144 4.144 6 C 0.018 3.982 7 H 0.062 0.938 8 C -0.078 4.078 9 C -0.107 4.107 10 C -0.141 4.141 11 C -0.141 4.141 12 C -0.142 4.142 13 C -0.138 4.138 14 N -0.249 5.249 15 C -0.072 4.072 16 C -0.129 4.129 17 C -0.260 4.260 18 S 0.096 5.904 19 C -0.663 4.663 20 H 0.090 0.910 21 C -0.138 4.138 22 N -0.506 5.506 23 Si 0.743 3.257 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.071 4.071 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.251 -1.411 23.802 23.949 hybrid contribution 2.258 -1.767 -1.104 3.072 sum 4.510 -3.178 22.698 23.359 Atomic orbital electron populations 1.21755 0.94330 1.02857 1.00734 1.21170 0.97075 0.98422 0.94108 0.91161 1.21647 1.00174 0.95566 0.97962 1.21650 1.02183 0.95045 0.95533 1.20503 0.96442 0.89629 0.91617 0.93806 1.19760 0.94432 0.94197 0.99440 1.21117 0.95576 0.96631 0.97421 1.21231 0.99912 0.92992 0.99923 1.21147 0.94143 0.99148 0.99679 1.21049 0.96191 0.96282 1.00709 1.20985 0.99255 0.92642 1.00872 1.61896 1.59704 1.01727 1.01597 1.22247 0.97443 0.99023 0.88482 1.21256 1.00890 0.99323 0.91456 1.23222 1.02500 1.02023 0.98304 1.84599 1.59155 1.48080 0.98581 1.22739 1.30477 1.20159 0.92922 0.90999 1.25004 0.94873 0.95613 0.98287 1.70036 1.29668 1.29493 1.21371 0.86135 0.78702 0.79787 0.81038 1.19629 1.20567 1.20589 1.22192 0.97041 0.88973 0.98917 0.91140 0.92768 0.93786 0.92467 0.91793 0.90518 0.91866 0.84978 0.86083 0.86418 0.86418 0.86600 0.95326 0.90312 0.90883 0.91796 0.92530 0.92258 0.92413 0.89656 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.75 37.16 0.33 -1.03 16 2 C -0.09 -0.84 3.21 -90.54 -0.29 -1.13 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.98 5.51 -26.56 -0.15 -1.13 16 5 C -0.11 -0.97 5.00 -26.61 -0.13 -1.10 16 6 C 0.13 1.34 2.04 -68.87 -0.14 1.20 16 7 H 0.04 0.48 8.00 -51.93 -0.42 0.07 16 8 C -0.08 -0.87 3.59 -104.62 -0.38 -1.25 16 9 C -0.09 -1.04 8.06 -39.58 -0.32 -1.36 16 10 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 12 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 13 C -0.12 -1.25 9.67 -39.58 -0.38 -1.63 16 14 N -0.52 -6.22 3.14 -228.08 -0.72 -6.94 16 15 C 0.06 0.80 4.56 -3.82 -0.02 0.78 16 16 C -0.09 -1.51 5.15 -26.73 -0.14 -1.65 16 17 C -0.11 -2.31 5.67 37.16 0.21 -2.10 16 18 S -0.13 -3.52 21.44 -107.50 -2.30 -5.82 16 19 C -0.51 -15.00 9.50 30.94 0.29 -14.71 16 20 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 21 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.81 29.55 -169.99 -5.02 16.78 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 C 0.06 0.64 4.73 -3.84 -0.02 0.62 16 28 H 0.07 0.75 6.01 -51.93 -0.31 0.44 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.74 6.58 -51.93 -0.34 0.40 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.13 1.59 7.73 -52.49 -0.41 1.18 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.04 8.04 -52.48 -0.42 0.62 16 40 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 41 H 0.08 1.16 5.76 -51.92 -0.30 0.86 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 1.07 6.44 -51.93 -0.33 0.74 16 44 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 45 H 0.06 1.24 8.14 -51.91 -0.42 0.82 16 46 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 47 H 0.09 1.05 6.22 -51.93 -0.32 0.73 16 48 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 384.35 15.07 5.79 5.79 Total: -1.00 -30.76 384.35 -12.25 -43.02 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -8.31 Total: 0.29 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: -2.42 Total: -27.62 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.02 Total: -32.45 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.76 -12.25 -43.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000512196708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.181 kcal (2) G-P(sol) polarization free energy of solvation -30.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds