Wall clock time and date at job start Tue Mar 31 2020 12:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50217 * 2 1 4 4 C 1.53125 * 109.50328 * 120.07536 * 2 1 3 5 5 C 1.53199 * 109.11380 * 62.32499 * 4 2 1 6 6 C 1.53039 * 109.29848 * 57.63112 * 5 4 2 7 7 H 1.09002 * 109.46147 * 60.83688 * 6 5 4 8 8 C 1.50707 * 109.46007 * 180.80198 * 6 5 4 9 9 C 1.38236 * 119.99696 * 79.78082 * 8 6 5 10 10 C 1.38238 * 119.99414 * 179.76319 * 9 8 6 11 11 C 1.38236 * 120.00294 * 0.48523 * 10 9 8 12 12 C 1.38241 * 120.00005 * 359.79272 * 11 10 9 13 13 C 1.38233 * 119.99643 * 359.94955 * 12 11 10 14 14 N 1.46839 * 109.52185 * 300.81880 * 6 5 4 15 15 C 1.46910 * 111.00003 * 185.83876 * 14 6 5 16 16 C 1.52997 * 109.47303 * 169.74070 * 15 14 6 17 17 C 1.53000 * 109.47154 * 179.97438 * 16 15 14 18 18 S 1.80999 * 109.46967 * 180.02562 * 17 16 15 19 19 C 1.76202 * 99.99722 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00444 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99989 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99967 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00178 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47131 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47183 * 119.99796 * 23 21 19 26 26 H 1.48501 * 109.47139 * 239.99870 * 23 21 19 27 27 C 1.46840 * 111.19959 * 61.74311 * 14 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00276 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00258 * 1 2 3 31 31 H 1.09004 * 109.52368 * 182.19222 * 4 2 1 32 32 H 1.09004 * 109.51961 * 302.38200 * 4 2 1 33 33 H 1.09003 * 109.49552 * 297.68265 * 5 4 2 34 34 H 1.09002 * 109.52520 * 177.59572 * 5 4 2 35 35 H 1.07991 * 120.00048 * 359.97438 * 9 8 6 36 36 H 1.08003 * 119.99367 * 180.25173 * 10 9 8 37 37 H 1.07995 * 120.00053 * 179.76052 * 11 10 9 38 38 H 1.07993 * 119.99929 * 179.97438 * 12 11 10 39 39 H 1.08005 * 120.00026 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47032 * 289.74606 * 15 14 6 41 41 H 1.09007 * 109.46352 * 49.74431 * 15 14 6 42 42 H 1.08998 * 109.47514 * 300.00240 * 16 15 14 43 43 H 1.09007 * 109.46683 * 60.00196 * 16 15 14 44 44 H 1.08998 * 109.47119 * 300.00497 * 17 16 15 45 45 H 1.09007 * 109.46414 * 60.00413 * 17 16 15 46 46 H 0.97002 * 119.99782 * 180.02562 * 22 21 19 47 47 H 1.09006 * 109.46549 * 178.23505 * 27 14 6 48 48 H 1.08999 * 109.45505 * 58.26961 * 27 14 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0412 -0.7233 1.2491 5 6 1.5749 -2.1821 1.2101 6 6 2.0846 -2.8419 -0.0733 7 1 3.1743 -2.8195 -0.0851 8 6 1.6114 -4.2718 -0.1249 9 6 0.3199 -4.5583 -0.5262 10 6 -0.1126 -5.8703 -0.5782 11 6 0.7431 -6.8949 -0.2193 12 6 2.0327 -6.6080 0.1876 13 6 2.4669 -5.2964 0.2345 14 7 1.5676 -2.1130 -1.2385 15 6 1.9224 -2.7987 -2.4883 16 6 1.1606 -2.1630 -3.6529 17 6 1.5306 -2.8767 -4.9546 18 16 0.6298 -2.1241 -6.3324 19 6 1.2274 -3.1110 -7.6641 20 1 1.9394 -3.9005 -7.4741 21 6 0.7839 -2.8732 -8.9576 22 7 -0.0835 -1.9106 -9.1894 23 14 1.4180 -3.9190 -10.3696 24 1 2.3765 -4.9262 -9.8480 25 1 0.2786 -4.6125 -11.0225 26 1 2.1024 -3.0503 -11.3606 27 6 2.0409 -0.7230 -1.2482 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 3.1305 -0.6896 1.2693 32 1 1.6441 -0.2366 2.1399 33 1 0.4856 -2.2165 1.2291 34 1 1.9710 -2.7144 2.0749 35 1 -0.3499 -3.7575 -0.8024 36 1 -1.1203 -6.0944 -0.8956 37 1 0.4039 -7.9196 -0.2562 38 1 2.7011 -7.4084 0.4684 39 1 3.4743 -5.0721 0.5527 40 1 2.9945 -2.7062 -2.6618 41 1 1.6562 -3.8531 -2.4124 42 1 0.0884 -2.2555 -3.4794 43 1 1.4267 -1.1086 -3.7287 44 1 2.6027 -2.7838 -5.1279 45 1 1.2647 -3.9312 -4.8790 46 1 -0.3937 -1.7447 -10.0934 47 1 1.6670 -0.2182 -2.1390 48 1 3.1308 -0.7107 -1.2545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000512196708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:38 Heat of formation + Delta-G solvation = -10.687877 kcal Electronic energy + Delta-G solvation = -24742.171134 eV Core-core repulsion = 21500.229345 eV Total energy + Delta-G solvation = -3241.941789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24617 -39.27237 -36.33269 -34.62037 -34.30168 -32.61045 -31.71270 -30.61335 -27.97398 -27.49711 -27.12001 -24.52249 -24.13597 -23.35494 -21.94178 -21.59748 -19.56506 -19.51785 -17.87279 -17.12141 -16.90716 -16.53785 -16.20268 -16.13285 -15.84094 -15.45373 -15.09662 -14.93892 -14.74306 -14.55525 -14.26729 -14.12728 -13.70200 -13.64504 -13.38665 -13.23786 -13.10012 -12.94803 -12.86225 -12.62266 -12.47501 -12.33978 -12.13438 -11.89276 -11.79274 -11.72270 -11.55604 -11.38130 -11.16552 -11.07841 -11.00108 -10.32386 -9.75015 -9.52166 -9.22773 -8.66933 -8.38220 -6.14261 0.48207 0.57043 1.30497 1.37222 1.48228 1.73505 2.27149 2.81833 2.95916 2.98438 3.32035 3.66080 3.83860 3.95104 4.05412 4.07327 4.17289 4.18602 4.23748 4.31336 4.34538 4.36820 4.41870 4.46807 4.59525 4.66788 4.71359 4.75935 4.78378 4.82689 4.89772 4.91878 4.94583 5.06705 5.12174 5.17657 5.19990 5.23574 5.26896 5.33152 5.34838 5.38907 5.46037 5.61269 5.66236 5.69544 5.73810 6.13213 6.17067 6.17493 6.27028 7.04063 8.71473 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.003248 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.090496 B = 8619.537780 C =10177.996395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.101 4.101 6 C 0.129 3.871 7 H 0.045 0.955 8 C -0.086 4.086 9 C -0.104 4.104 10 C -0.136 4.136 11 C -0.130 4.130 12 C -0.128 4.128 13 C -0.126 4.126 14 N -0.525 5.525 15 C 0.072 3.928 16 C -0.076 4.076 17 C -0.086 4.086 18 S -0.192 6.192 19 C -0.539 4.539 20 H 0.070 0.930 21 C 0.017 3.983 22 N -0.907 5.907 23 Si 0.993 3.007 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.055 3.945 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.028 0.972 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.272 0.728 47 H 0.069 0.931 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 -3.357 25.112 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.099 0.901 4 C -0.148 4.148 5 C -0.139 4.139 6 C 0.021 3.979 7 H 0.063 0.937 8 C -0.086 4.086 9 C -0.122 4.122 10 C -0.154 4.154 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.145 4.145 14 N -0.250 5.250 15 C -0.058 4.058 16 C -0.115 4.115 17 C -0.235 4.235 18 S 0.037 5.963 19 C -0.687 4.687 20 H 0.088 0.912 21 C -0.188 4.188 22 N -0.543 5.543 23 Si 0.815 3.185 24 H -0.188 1.188 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.073 4.073 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.570 -2.373 25.010 25.375 hybrid contribution 1.833 -1.465 -1.392 2.729 sum 5.403 -3.838 23.618 24.530 Atomic orbital electron populations 1.21712 0.94688 1.02132 1.00811 1.21168 0.96685 0.98897 0.93701 0.90094 1.21626 1.00549 0.94876 0.97798 1.21619 1.01736 0.95578 0.94978 1.20549 0.96407 0.89464 0.91491 0.93680 1.19857 0.94373 0.94684 0.99731 1.21107 0.95927 0.96720 0.98429 1.21426 1.00621 0.93107 1.00253 1.21428 0.94278 0.99875 0.99247 1.21371 0.96418 0.96815 0.99961 1.21232 0.99878 0.92709 1.00652 1.61848 1.59993 1.02036 1.01080 1.21965 0.96667 0.98576 0.88552 1.21114 1.00785 0.99035 0.90584 1.23131 1.01392 1.01659 0.97349 1.84594 1.61041 1.49508 1.01173 1.23067 1.30921 1.20581 0.94140 0.91190 1.26051 0.94793 0.96836 1.01153 1.70160 1.30734 1.31037 1.22376 0.84982 0.78380 0.78012 0.77089 1.18795 1.19553 1.19528 1.22226 0.97125 0.88559 0.99400 0.92247 0.93991 0.92402 0.91842 0.90343 0.91235 0.90686 0.86100 0.85436 0.84613 0.84237 0.85045 0.95404 0.90804 0.91640 0.91848 0.92446 0.92448 0.91932 0.91215 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.75 71.98 0.63 -1.92 16 2 C -0.09 -1.50 3.21 -10.74 -0.03 -1.53 16 3 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -1.62 5.51 30.70 0.17 -1.45 16 5 C -0.10 -1.67 5.00 30.67 0.15 -1.52 16 6 C 0.13 2.58 2.04 44.20 0.09 2.67 16 7 H 0.05 0.91 8.00 -2.39 -0.02 0.89 16 8 C -0.09 -1.84 3.59 -19.86 -0.07 -1.91 16 9 C -0.10 -2.40 8.06 22.27 0.18 -2.22 16 10 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 11 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 12 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 13 C -0.13 -2.44 9.67 22.27 0.22 -2.22 16 14 N -0.53 -12.20 3.14 -875.50 -2.75 -14.94 16 15 C 0.07 2.00 4.56 86.30 0.39 2.39 16 16 C -0.08 -2.59 5.15 30.59 0.16 -2.43 16 17 C -0.09 -3.61 5.67 71.98 0.41 -3.21 16 18 S -0.19 -10.47 21.44 -56.49 -1.21 -11.68 16 19 C -0.54 -31.90 9.50 67.95 0.65 -31.25 16 20 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 21 C 0.02 0.96 5.49 84.86 0.47 1.43 16 22 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 23 Si 0.99 44.60 29.55 68.60 2.03 46.63 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C 0.05 1.19 4.73 86.32 0.41 1.60 16 28 H 0.06 1.25 6.01 -2.39 -0.01 1.23 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.27 6.58 -2.39 -0.02 1.25 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 3.00 7.73 -2.92 -0.02 2.98 16 36 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.84 16 39 H 0.13 2.06 8.04 -2.91 -0.02 2.03 16 40 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 41 H 0.07 2.16 5.76 -2.38 -0.01 2.14 16 42 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 43 H 0.06 2.16 6.44 -2.38 -0.02 2.15 16 44 H 0.06 2.40 8.14 -2.40 -0.02 2.38 16 45 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.07 1.73 6.22 -2.38 -0.01 1.72 16 48 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -66.48 384.35 3.74 -62.74 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.90 Total: 21.06 kcal Atomic # 6 Polarization: -53.18 SS G_CDS: 4.48 Total: -48.69 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.46 Total: -70.05 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -10.47 SS G_CDS: -1.21 Total: -11.68 kcal Total: -66.48 3.74 -62.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000512196708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.047 kcal (2) G-P(sol) polarization free energy of solvation -66.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds