Wall clock time and date at job start Tue Mar 31 2020 13:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47393 * 2 1 4 4 C 1.53000 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.53011 * 109.47051 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47035 * 180.02562 * 5 4 3 7 7 C 1.35713 * 117.00000 * 180.02562 * 6 5 4 8 8 C 1.39016 * 119.90433 * 0.28681 * 7 6 5 9 9 C 1.37687 * 120.09093 * 180.26363 * 8 7 6 10 10 C 1.39792 * 119.90686 * 359.44722 * 9 8 7 11 11 C 1.47501 * 120.09654 * 180.30037 * 10 9 8 12 12 O 1.21622 * 119.99811 * 308.29412 * 11 10 9 13 13 N 1.34777 * 119.99963 * 128.28703 * 11 10 9 14 14 C 1.36901 * 119.99467 * 187.19209 * 13 11 10 15 15 H 1.08001 * 120.00457 * 55.57646 * 14 13 11 16 16 C 1.39030 * 119.99879 * 235.56516 * 14 13 11 17 17 N 1.31383 * 119.99740 * 41.35342 * 16 14 13 18 18 Si 1.86794 * 119.99803 * 221.35412 * 16 14 13 19 19 H 1.48495 * 109.47277 * 60.00409 * 18 16 14 20 20 H 1.48500 * 109.46826 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47154 * 299.99866 * 18 16 14 22 22 C 1.46497 * 119.99873 * 7.19875 * 13 11 10 23 23 C 1.52999 * 109.47045 * 102.20292 * 22 13 11 24 24 C 1.53000 * 109.47021 * 186.49750 * 23 22 13 25 25 C 1.39798 * 119.81473 * 0.28170 * 10 9 8 26 26 C 1.37694 * 119.90398 * 359.97438 * 25 10 9 27 27 H 1.09000 * 109.47476 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47287 * 299.99813 * 1 2 3 29 29 H 1.08998 * 109.47461 * 59.99882 * 1 2 3 30 30 H 1.08998 * 109.47287 * 240.00187 * 2 1 3 31 31 H 1.09004 * 109.47163 * 120.00376 * 2 1 3 32 32 H 1.09003 * 109.46885 * 60.00302 * 3 2 1 33 33 H 1.09004 * 109.47273 * 300.00308 * 3 2 1 34 34 H 1.08998 * 109.47517 * 60.00166 * 4 3 2 35 35 H 1.08996 * 109.47041 * 299.99611 * 4 3 2 36 36 H 1.08998 * 109.47048 * 59.99605 * 5 4 3 37 37 H 1.08998 * 109.46763 * 300.00110 * 5 4 3 38 38 H 1.07990 * 119.95398 * 359.97438 * 8 7 6 39 39 H 1.08001 * 120.04774 * 179.72601 * 9 8 7 40 40 H 0.96996 * 119.99514 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46805 * 222.19526 * 22 13 11 42 42 H 1.08993 * 109.47656 * 342.19950 * 22 13 11 43 43 H 1.09003 * 109.47086 * 306.49300 * 23 22 13 44 44 H 1.09003 * 109.47361 * 66.49893 * 23 22 13 45 45 H 1.08996 * 109.47276 * 59.99658 * 24 23 22 46 46 H 1.09003 * 109.47214 * 180.02562 * 24 23 22 47 47 H 1.09005 * 109.47240 * 300.00024 * 24 23 22 48 48 H 1.07999 * 120.05054 * 180.02562 * 25 10 9 49 49 H 1.07993 * 119.95115 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5090 2.8849 -0.0012 7 6 6.1252 4.0941 -0.0003 8 6 5.3661 5.2587 0.0078 9 6 5.9872 6.4876 0.0033 10 6 7.3831 6.5630 0.0022 11 6 8.0528 7.8772 0.0041 12 8 7.7467 8.7169 -0.8208 13 7 9.0039 8.1475 0.9200 14 6 9.5206 9.4116 1.0174 15 1 8.8627 10.2533 1.1757 16 6 10.8925 9.6117 0.9128 17 7 11.5858 8.9522 0.0125 18 14 11.7498 10.8181 2.0524 19 1 11.5560 10.3913 3.4615 20 1 13.2011 10.8489 1.7393 21 1 11.1739 12.1736 1.8620 22 6 9.4848 7.0888 1.8110 23 6 10.8410 6.5825 1.3159 24 6 11.2676 5.3710 2.1473 25 6 8.1426 5.3893 -0.0001 26 6 7.5135 4.1645 -0.0010 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9285 0.8891 36 1 3.7170 3.3983 0.8904 37 1 3.7163 3.3993 -0.8895 38 1 4.2879 5.1996 0.0129 39 1 5.3968 7.3919 0.0051 40 1 12.5428 9.0922 -0.0607 41 1 9.5915 7.4846 2.8210 42 1 8.7699 6.2661 1.8168 43 1 10.7605 6.2937 0.2679 44 1 11.5839 7.3735 1.4188 45 1 10.5248 4.5800 2.0445 46 1 12.2340 5.0105 1.7949 47 1 11.3481 5.6597 3.1954 48 1 9.2213 5.4431 -0.0005 49 1 8.0994 3.2574 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542135.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:40 Heat of formation + Delta-G solvation = -59.438929 kcal Electronic energy + Delta-G solvation = -26647.613240 eV Core-core repulsion = 22960.804576 eV Total energy + Delta-G solvation = -3686.808664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.11560 -38.77478 -36.90060 -35.95065 -35.26849 -32.49374 -31.97174 -31.49559 -30.70742 -29.56427 -26.60355 -25.74036 -24.76140 -23.14532 -22.48726 -21.54145 -21.22765 -20.71115 -19.32324 -18.03362 -16.97231 -16.62549 -16.26985 -15.66143 -15.41564 -15.05656 -14.78738 -14.39007 -14.19177 -13.81285 -13.67197 -13.65227 -13.40113 -13.25470 -13.02890 -12.83589 -12.39484 -12.25182 -11.98242 -11.88114 -11.73640 -11.55023 -11.48383 -11.40417 -11.15654 -11.10885 -10.97542 -10.92142 -10.75298 -10.62630 -10.53195 -10.34840 -10.24670 -9.85722 -8.71134 -8.64758 -8.20985 -7.81892 -7.26641 -6.37579 -3.98162 1.54416 1.65051 3.13274 3.19688 3.27995 3.32150 3.79004 4.19291 4.30553 4.46523 4.49354 4.65098 4.78509 4.78701 4.89031 4.92914 5.01893 5.13028 5.15813 5.17410 5.31839 5.37604 5.46640 5.55553 5.59917 5.64408 5.67367 5.72535 5.78175 5.81277 5.83867 5.90560 5.92905 5.98135 6.08603 6.21729 6.29725 6.48472 6.49274 6.53100 6.59736 6.67961 6.91494 6.96161 7.06285 7.44227 7.53558 7.61791 8.45218 8.60554 9.26099 9.37727 10.12514 10.60103 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.002382 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.593648 B =11750.726004 C =12307.459956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.058 3.942 6 O -0.317 6.317 7 C 0.129 3.871 8 C -0.216 4.216 9 C -0.044 4.044 10 C -0.134 4.134 11 C 0.507 3.493 12 O -0.563 6.563 13 N -0.436 5.436 14 C -0.353 4.353 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.812 5.812 18 Si 0.885 3.115 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.107 3.893 23 C -0.138 4.138 24 C -0.152 4.152 25 C -0.057 4.057 26 C -0.159 4.159 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.267 0.733 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.089 0.911 45 H 0.045 0.955 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.142 0.858 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.186 -17.329 3.208 22.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.017 4.017 6 O -0.231 6.231 7 C 0.083 3.917 8 C -0.235 4.235 9 C -0.063 4.063 10 C -0.138 4.138 11 C 0.296 3.704 12 O -0.446 6.446 13 N -0.156 5.156 14 C -0.479 4.479 15 H 0.100 0.900 16 C -0.138 4.138 17 N -0.444 5.444 18 Si 0.710 3.290 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.017 4.017 23 C -0.177 4.177 24 C -0.210 4.210 25 C -0.075 4.075 26 C -0.178 4.178 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.160 0.840 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.055 -17.110 2.705 21.691 hybrid contribution 0.440 0.666 0.499 0.941 sum -12.616 -16.444 3.203 20.972 Atomic orbital electron populations 1.21779 0.95760 1.01662 1.01904 1.21507 0.95908 0.96471 1.02272 1.21535 0.94047 0.97427 1.02550 1.21556 0.95379 0.95009 1.03699 1.22803 0.78931 0.98467 1.01487 1.85970 1.20913 1.27447 1.88794 1.19093 0.92231 0.83713 0.96622 1.21072 0.99579 0.92194 1.10645 1.20978 0.93503 0.97032 0.94790 1.20446 0.93964 0.95343 1.04020 1.18540 0.84273 0.85706 0.81927 1.90633 1.67206 1.48675 1.38043 1.43265 1.34467 1.09305 1.28548 1.18818 0.90305 0.84503 1.54236 0.90035 1.25405 0.97981 0.96350 0.94072 1.70400 1.08409 1.41059 1.24483 0.86701 0.77948 0.81970 0.82373 1.19626 1.21150 1.19565 1.21789 0.95024 0.90772 0.94150 1.22140 0.99102 0.97478 0.98930 1.21834 1.00385 0.98651 1.00117 1.21506 1.00897 0.90459 0.94680 1.20305 0.91046 0.98442 1.07975 0.92737 0.92700 0.92690 0.91859 0.91858 0.91610 0.91610 0.90842 0.90848 0.92074 0.92082 0.85706 0.85500 0.92277 0.92286 0.92134 0.92023 0.89310 0.93545 0.93417 0.93393 0.84047 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.15 0.37 -0.45 16 2 C -0.12 -0.72 5.93 -26.74 -0.16 -0.88 16 3 C -0.12 -0.74 5.21 -26.73 -0.14 -0.88 16 4 C -0.12 -0.93 5.58 -26.73 -0.15 -1.08 16 5 C 0.06 0.57 4.74 37.16 0.18 0.75 16 6 O -0.32 -4.23 10.12 -18.84 -0.19 -4.42 16 7 C 0.13 1.94 6.70 -39.01 -0.26 1.68 16 8 C -0.22 -3.25 9.01 -39.49 -0.36 -3.60 16 9 C -0.04 -0.79 9.74 -39.20 -0.38 -1.18 16 10 C -0.13 -2.78 4.94 -104.96 -0.52 -3.30 16 11 C 0.51 13.09 7.14 -12.49 -0.09 13.00 16 12 O -0.56 -16.88 17.03 5.26 0.09 -16.79 16 13 N -0.44 -11.11 2.56 -116.01 -0.30 -11.41 16 14 C -0.35 -9.80 8.42 -14.99 -0.13 -9.93 16 15 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 16 C 0.07 1.93 3.99 -17.45 -0.07 1.86 16 17 N -0.81 -21.87 11.35 55.50 0.63 -21.24 16 18 Si 0.89 19.87 29.69 -169.99 -5.05 14.82 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 C 0.11 2.24 4.79 -4.04 -0.02 2.22 16 23 C -0.14 -2.78 4.36 -26.73 -0.12 -2.90 16 24 C -0.15 -2.37 9.91 37.16 0.37 -2.01 16 25 C -0.06 -1.04 7.41 -39.20 -0.29 -1.33 16 26 C -0.16 -2.50 9.97 -39.49 -0.39 -2.89 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.56 7.64 -51.93 -0.40 0.16 16 37 H 0.06 0.57 7.67 -51.93 -0.40 0.17 16 38 H 0.13 1.51 6.27 -52.49 -0.33 1.18 16 39 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.06 1.21 8.13 -51.93 -0.42 0.79 16 42 H 0.06 1.15 4.95 -51.93 -0.26 0.89 16 43 H 0.06 1.33 6.53 -51.93 -0.34 0.99 16 44 H 0.09 2.02 5.32 -51.93 -0.28 1.74 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.14 2.61 4.80 -52.49 -0.25 2.35 16 49 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 391.32 15.07 5.90 5.90 Total: -1.00 -31.78 391.32 -9.22 -41.01 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.15 Total: 3.03 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.16 Total: -10.90 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.33 Total: -32.65 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.10 Total: -21.21 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.05 Total: 14.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.78 -9.22 -41.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542135.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.432 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds