Wall clock time and date at job start Tue Mar 31 2020 13:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47393 * 2 1 4 4 C 1.53000 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.53011 * 109.47051 * 180.02562 * 4 3 2 6 6 O 1.42895 * 109.47035 * 180.02562 * 5 4 3 7 7 C 1.35713 * 117.00000 * 180.02562 * 6 5 4 8 8 C 1.39016 * 119.90433 * 0.28681 * 7 6 5 9 9 C 1.37687 * 120.09093 * 180.26363 * 8 7 6 10 10 C 1.39792 * 119.90686 * 359.44722 * 9 8 7 11 11 C 1.47501 * 120.09654 * 180.30037 * 10 9 8 12 12 O 1.21622 * 119.99811 * 308.29412 * 11 10 9 13 13 N 1.34777 * 119.99963 * 128.28703 * 11 10 9 14 14 C 1.36901 * 119.99467 * 187.19209 * 13 11 10 15 15 H 1.08001 * 120.00457 * 55.57646 * 14 13 11 16 16 C 1.39030 * 119.99879 * 235.56516 * 14 13 11 17 17 N 1.31383 * 119.99740 * 41.35342 * 16 14 13 18 18 Si 1.86794 * 119.99803 * 221.35412 * 16 14 13 19 19 H 1.48495 * 109.47277 * 60.00409 * 18 16 14 20 20 H 1.48500 * 109.46826 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47154 * 299.99866 * 18 16 14 22 22 C 1.46497 * 119.99873 * 7.19875 * 13 11 10 23 23 C 1.52999 * 109.47045 * 102.20292 * 22 13 11 24 24 C 1.53000 * 109.47021 * 186.49750 * 23 22 13 25 25 C 1.39798 * 119.81473 * 0.28170 * 10 9 8 26 26 C 1.37694 * 119.90398 * 359.97438 * 25 10 9 27 27 H 1.09000 * 109.47476 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47287 * 299.99813 * 1 2 3 29 29 H 1.08998 * 109.47461 * 59.99882 * 1 2 3 30 30 H 1.08998 * 109.47287 * 240.00187 * 2 1 3 31 31 H 1.09004 * 109.47163 * 120.00376 * 2 1 3 32 32 H 1.09003 * 109.46885 * 60.00302 * 3 2 1 33 33 H 1.09004 * 109.47273 * 300.00308 * 3 2 1 34 34 H 1.08998 * 109.47517 * 60.00166 * 4 3 2 35 35 H 1.08996 * 109.47041 * 299.99611 * 4 3 2 36 36 H 1.08998 * 109.47048 * 59.99605 * 5 4 3 37 37 H 1.08998 * 109.46763 * 300.00110 * 5 4 3 38 38 H 1.07990 * 119.95398 * 359.97438 * 8 7 6 39 39 H 1.08001 * 120.04774 * 179.72601 * 9 8 7 40 40 H 0.96996 * 119.99514 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46805 * 222.19526 * 22 13 11 42 42 H 1.08993 * 109.47656 * 342.19950 * 22 13 11 43 43 H 1.09003 * 109.47086 * 306.49300 * 23 22 13 44 44 H 1.09003 * 109.47361 * 66.49893 * 23 22 13 45 45 H 1.08996 * 109.47276 * 59.99658 * 24 23 22 46 46 H 1.09003 * 109.47214 * 180.02562 * 24 23 22 47 47 H 1.09005 * 109.47240 * 300.00024 * 24 23 22 48 48 H 1.07999 * 120.05054 * 180.02562 * 25 10 9 49 49 H 1.07993 * 119.95115 * 180.02562 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5090 2.8849 -0.0012 7 6 6.1252 4.0941 -0.0003 8 6 5.3661 5.2587 0.0078 9 6 5.9872 6.4876 0.0033 10 6 7.3831 6.5630 0.0022 11 6 8.0528 7.8772 0.0041 12 8 7.7467 8.7169 -0.8208 13 7 9.0039 8.1475 0.9200 14 6 9.5206 9.4116 1.0174 15 1 8.8627 10.2533 1.1757 16 6 10.8925 9.6117 0.9128 17 7 11.5858 8.9522 0.0125 18 14 11.7498 10.8181 2.0524 19 1 11.5560 10.3913 3.4615 20 1 13.2011 10.8489 1.7393 21 1 11.1739 12.1736 1.8620 22 6 9.4848 7.0888 1.8110 23 6 10.8410 6.5825 1.3159 24 6 11.2676 5.3710 2.1473 25 6 8.1426 5.3893 -0.0001 26 6 7.5135 4.1645 -0.0010 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9336 0.9285 0.8891 36 1 3.7170 3.3983 0.8904 37 1 3.7163 3.3993 -0.8895 38 1 4.2879 5.1996 0.0129 39 1 5.3968 7.3919 0.0051 40 1 12.5428 9.0922 -0.0607 41 1 9.5915 7.4846 2.8210 42 1 8.7699 6.2661 1.8168 43 1 10.7605 6.2937 0.2679 44 1 11.5839 7.3735 1.4188 45 1 10.5248 4.5800 2.0445 46 1 12.2340 5.0105 1.7949 47 1 11.3481 5.6597 3.1954 48 1 9.2213 5.4431 -0.0005 49 1 8.0994 3.2574 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542135.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:39 Heat of formation + Delta-G solvation = -76.103334 kcal Electronic energy + Delta-G solvation = -26648.335862 eV Core-core repulsion = 22960.804576 eV Total energy + Delta-G solvation = -3687.531287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43536 -40.34303 -38.16659 -37.19383 -36.63236 -34.34289 -33.32301 -32.69465 -31.98310 -30.89879 -27.54276 -27.28381 -26.47854 -24.11209 -23.97089 -22.37813 -22.29299 -21.85373 -21.03666 -19.18501 -18.91856 -17.96149 -17.35885 -17.00031 -16.91379 -16.44477 -16.06611 -15.95801 -15.36468 -15.19750 -15.06420 -14.61699 -14.43653 -14.38109 -14.31576 -13.90519 -13.81410 -13.58772 -13.44402 -13.30540 -13.06849 -12.79944 -12.67847 -12.55205 -12.49595 -12.27532 -12.09469 -12.01847 -11.95343 -11.78087 -11.63123 -11.59810 -11.45694 -11.36103 -10.66424 -10.20209 -9.99870 -9.34005 -9.11102 -8.39112 -6.10302 0.15234 0.33584 1.38046 1.43150 1.52952 2.08486 2.14805 2.31866 2.70630 2.83886 3.12155 3.76756 3.82199 3.92056 3.94116 4.02353 4.12753 4.24166 4.25055 4.25695 4.34112 4.40105 4.46434 4.48204 4.57391 4.65100 4.66006 4.77752 4.84270 4.85840 4.88775 5.00294 5.01942 5.08060 5.11413 5.15939 5.21576 5.27193 5.30621 5.32436 5.42337 5.42924 5.50897 5.51205 5.55741 5.65804 5.82170 6.30129 6.41104 6.64731 7.22043 7.40970 8.13286 8.57824 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027921 B = 0.002382 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.593648 B =11750.726004 C =12307.459956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.114 4.114 4 C -0.113 4.113 5 C 0.047 3.953 6 O -0.319 6.319 7 C 0.143 3.857 8 C -0.203 4.203 9 C -0.051 4.051 10 C -0.167 4.167 11 C 0.492 3.508 12 O -0.627 6.627 13 N -0.444 5.444 14 C -0.393 4.393 15 H 0.052 0.948 16 C 0.043 3.957 17 N -0.837 5.837 18 Si 0.957 3.043 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.276 1.276 22 C 0.107 3.893 23 C -0.129 4.129 24 C -0.142 4.142 25 C -0.059 4.059 26 C -0.153 4.153 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.159 0.841 39 H 0.121 0.879 40 H 0.274 0.726 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.135 0.865 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 -20.095 4.660 24.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.151 4.151 5 C -0.027 4.027 6 O -0.232 6.232 7 C 0.097 3.903 8 C -0.222 4.222 9 C -0.070 4.070 10 C -0.170 4.170 11 C 0.283 3.717 12 O -0.514 6.514 13 N -0.162 5.162 14 C -0.519 4.519 15 H 0.070 0.930 16 C -0.168 4.168 17 N -0.468 5.468 18 Si 0.780 3.220 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.015 4.015 23 C -0.167 4.167 24 C -0.199 4.199 25 C -0.077 4.077 26 C -0.171 4.171 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.177 0.823 39 H 0.139 0.861 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.058 0.942 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.152 0.848 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.566 -19.919 4.191 24.462 hybrid contribution 0.489 1.417 -0.019 1.499 sum -13.077 -18.502 4.172 23.038 Atomic orbital electron populations 1.21783 0.95448 1.01961 1.01973 1.21508 0.96184 0.96160 1.02345 1.21516 0.92916 0.97841 1.02923 1.21540 0.96209 0.93629 1.03677 1.23158 0.76912 1.00153 1.02501 1.85997 1.23016 1.26159 1.88051 1.19168 0.92221 0.84418 0.94530 1.21295 1.01244 0.90748 1.08893 1.21002 0.92428 0.98343 0.95234 1.20083 0.95123 0.93385 1.08408 1.19363 0.84196 0.87126 0.81010 1.90555 1.69097 1.51276 1.40444 1.43566 1.34197 1.09578 1.28839 1.18796 0.90999 0.85261 1.56861 0.92982 1.26170 0.97761 0.98304 0.94522 1.70424 1.08915 1.42398 1.25101 0.85615 0.76937 0.79004 0.80485 1.18112 1.19895 1.20101 1.21938 0.96065 0.90214 0.93315 1.21960 0.97619 0.98582 0.98584 1.21743 1.01488 0.96904 0.99800 1.21373 1.00454 0.90574 0.95304 1.20489 0.91772 0.98153 1.06699 0.92384 0.92592 0.92670 0.91872 0.91752 0.91164 0.91338 0.91000 0.90794 0.90855 0.91209 0.82341 0.86098 0.91581 0.91971 0.89843 0.94226 0.92137 0.91452 0.92240 0.92131 0.84776 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 71.98 0.71 -0.62 16 2 C -0.12 -1.16 5.93 30.59 0.18 -0.98 16 3 C -0.11 -1.13 5.21 30.59 0.16 -0.97 16 4 C -0.11 -1.42 5.58 30.60 0.17 -1.25 16 5 C 0.05 0.76 4.74 71.99 0.34 1.10 16 6 O -0.32 -7.31 10.12 -90.34 -0.91 -8.22 16 7 C 0.14 3.88 6.70 22.64 0.15 4.03 16 8 C -0.20 -5.63 9.01 22.33 0.20 -5.43 16 9 C -0.05 -1.84 9.74 22.52 0.22 -1.62 16 10 C -0.17 -7.09 4.94 -20.08 -0.10 -7.19 16 11 C 0.49 26.95 7.14 86.69 0.62 27.57 16 12 O -0.63 -40.37 17.03 -4.10 -0.07 -40.44 16 13 N -0.44 -23.75 2.56 -639.18 -1.64 -25.39 16 14 C -0.39 -23.03 8.42 84.09 0.71 -22.32 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 16 C 0.04 2.32 3.99 84.95 0.34 2.66 16 17 N -0.84 -46.39 11.35 21.68 0.25 -46.14 16 18 Si 0.96 41.61 29.69 68.60 2.04 43.65 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.11 4.58 4.79 86.38 0.41 4.99 16 23 C -0.13 -5.21 4.36 30.59 0.13 -5.07 16 24 C -0.14 -4.11 9.91 71.98 0.71 -3.40 16 25 C -0.06 -2.10 7.41 22.52 0.17 -1.93 16 26 C -0.15 -4.41 9.97 22.33 0.22 -4.18 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.04 7.64 -2.39 -0.02 1.02 16 37 H 0.07 1.04 7.67 -2.39 -0.02 1.02 16 38 H 0.16 3.26 6.27 -2.92 -0.02 3.24 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.06 2.56 8.13 -2.39 -0.02 2.55 16 42 H 0.08 3.15 4.95 -2.39 -0.01 3.14 16 43 H 0.04 1.75 6.53 -2.39 -0.02 1.73 16 44 H 0.06 2.78 5.32 -2.39 -0.01 2.77 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.13 4.96 4.80 -2.91 -0.01 4.95 16 49 H 0.16 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -73.67 391.32 5.93 -67.74 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.92 Total: 23.43 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 5.36 Total: -14.61 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.39 Total: -71.54 kcal Atomic # 8 Polarization: -47.68 SS G_CDS: -0.98 Total: -48.66 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.04 Total: 43.65 kcal Total: -73.67 5.93 -67.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542135.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.368 kcal (2) G-P(sol) polarization free energy of solvation -73.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds