Wall clock time and date at job start Tue Mar 31 2020 12:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 C 1.52998 * 109.46779 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46779 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47052 * 180.02562 * 5 4 3 7 7 O 1.21300 * 119.99949 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00264 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99850 * 4.72923 * 8 6 5 10 10 C 1.50701 * 109.47393 * 270.00715 * 9 8 6 11 11 H 1.07997 * 119.99598 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99933 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00090 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99817 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47297 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47220 * 119.99845 * 14 12 10 17 17 H 1.48494 * 109.47257 * 240.00149 * 14 12 10 18 18 C 1.40104 * 120.00260 * 184.73497 * 8 6 5 19 19 C 1.38846 * 120.01408 * 67.88653 * 18 8 6 20 20 C 1.38091 * 119.98645 * 180.02562 * 19 18 8 21 21 C 1.38727 * 120.01530 * 0.02562 * 20 19 18 22 22 O 1.35963 * 119.98888 * 179.97438 * 21 20 19 23 23 C 1.42895 * 117.00301 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47299 * 180.02562 * 23 22 21 25 25 C 1.38729 * 120.02503 * 0.23514 * 21 20 19 26 26 C 1.38085 * 120.01341 * 359.48598 * 25 21 20 27 27 H 1.08999 * 109.47047 * 300.00038 * 1 2 3 28 28 H 1.08995 * 109.47218 * 59.99907 * 1 2 3 29 29 H 1.08997 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47047 * 239.99962 * 2 1 3 31 31 H 1.09006 * 109.46794 * 120.00207 * 2 1 3 32 32 H 1.08999 * 109.47196 * 60.00054 * 3 2 1 33 33 H 1.08995 * 109.47156 * 300.00131 * 3 2 1 34 34 H 1.08999 * 109.47191 * 60.00077 * 4 3 2 35 35 H 1.08995 * 109.47406 * 300.00005 * 4 3 2 36 36 H 1.08994 * 109.47220 * 60.00542 * 5 4 3 37 37 H 1.08998 * 109.47647 * 300.00072 * 5 4 3 38 38 H 1.08997 * 109.47146 * 30.00564 * 9 8 6 39 39 H 1.09005 * 109.46978 * 150.00254 * 9 8 6 40 40 H 0.96991 * 120.00096 * 180.02562 * 13 12 10 41 41 H 1.08005 * 120.01061 * 0.02562 * 19 18 8 42 42 H 1.08003 * 119.99682 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.47319 * 300.00335 * 23 22 21 44 44 H 1.09003 * 109.47020 * 60.00245 * 23 22 21 45 45 H 1.09003 * 109.47218 * 59.99958 * 24 23 22 46 46 H 1.09000 * 109.47011 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.47243 * 300.00277 * 24 23 22 48 48 H 1.08000 * 119.98729 * 179.71899 * 25 21 20 49 49 H 1.07998 * 120.00407 * 180.23303 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.5871 2.8849 0.0000 7 8 6.1935 1.8344 0.0009 8 7 6.2610 4.0520 0.0000 9 6 5.5323 5.3186 0.1046 10 6 5.1808 5.8115 -1.2755 11 1 5.4715 5.2387 -2.1436 12 6 4.4889 6.9941 -1.4297 13 7 4.1353 7.6918 -0.3724 14 14 4.0539 7.6054 -3.1404 15 1 4.5610 6.6449 -4.1531 16 1 2.5787 7.7215 -3.2642 17 1 4.6756 8.9352 -3.3639 18 6 7.6584 4.0541 -0.1002 19 6 8.2709 3.6489 -1.2785 20 6 9.6483 3.6506 -1.3764 21 6 10.4202 4.0566 -0.2976 22 8 11.7764 4.0576 -0.3944 23 6 12.5086 4.4872 0.7551 24 6 14.0081 4.4214 0.4586 25 6 9.8090 4.4565 0.8819 26 6 8.4316 4.4606 0.9791 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9284 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3992 0.8895 37 1 3.7171 3.3983 -0.8904 38 1 4.6189 5.1659 0.6794 39 1 6.1578 6.0573 0.6059 40 1 3.6483 8.5236 -0.4809 41 1 7.6702 3.3324 -2.1184 42 1 10.1249 3.3359 -2.2931 43 1 12.2317 5.5127 1.0000 44 1 12.2757 3.8368 1.5982 45 1 14.2407 5.0721 -0.3845 46 1 14.5666 4.7495 1.3352 47 1 14.2854 3.3962 0.2134 48 1 10.4106 4.7681 1.7229 49 1 7.9558 4.7755 1.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072678928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:48 Heat of formation + Delta-G solvation = -77.118401 kcal Electronic energy + Delta-G solvation = -26674.809683 eV Core-core repulsion = 22987.234379 eV Total energy + Delta-G solvation = -3687.575303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.12851 -39.20051 -37.16737 -35.69375 -34.78260 -32.65166 -31.98182 -31.66101 -30.60980 -28.82650 -27.21921 -26.48104 -24.04125 -23.10694 -22.84875 -21.64371 -21.24645 -20.65358 -18.57988 -18.05693 -16.75792 -16.54651 -16.05155 -15.83436 -15.66643 -15.54347 -14.53927 -14.42248 -14.18213 -13.86752 -13.57143 -13.26332 -13.21516 -13.17362 -12.94614 -12.76123 -12.65063 -12.40716 -12.06910 -11.77919 -11.68364 -11.64236 -11.55572 -11.36418 -11.04989 -10.88414 -10.75357 -10.71441 -10.64661 -10.56407 -10.49107 -10.22997 -10.19198 -9.80481 -9.11653 -8.63543 -8.58865 -8.25315 -7.40923 -6.21329 -4.28409 1.72553 1.77378 3.20330 3.28793 3.30778 3.32271 3.37392 3.84375 4.14034 4.32339 4.83523 4.87998 4.94534 5.06045 5.10370 5.12408 5.18199 5.19268 5.22811 5.40056 5.45586 5.48170 5.59495 5.66456 5.71684 5.76016 5.85203 5.88229 5.89542 5.93370 5.95275 6.08212 6.18832 6.19749 6.25905 6.28191 6.36277 6.41132 6.61305 6.62308 6.70904 6.81667 6.94157 7.03117 7.16070 7.53083 7.69675 7.77367 8.00768 8.23339 8.75592 8.99404 9.39295 10.85552 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.003686 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.414504 B = 7594.803165 C = 9968.596356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.121 4.121 4 C -0.102 4.102 5 C -0.133 4.133 6 C 0.520 3.480 7 O -0.563 6.563 8 N -0.561 5.561 9 C 0.239 3.761 10 C -0.535 4.535 11 H 0.062 0.938 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.143 3.857 19 C -0.068 4.068 20 C -0.142 4.142 21 C 0.112 3.888 22 O -0.320 6.320 23 C 0.054 3.946 24 C -0.151 4.151 25 C -0.198 4.198 26 C -0.086 4.086 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.037 0.963 40 H 0.265 0.735 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -7.753 3.230 10.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.159 4.159 4 C -0.140 4.140 5 C -0.172 4.172 6 C 0.310 3.690 7 O -0.443 6.443 8 N -0.289 5.289 9 C 0.121 3.879 10 C -0.574 4.574 11 H 0.080 0.920 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.723 3.277 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.051 3.949 19 C -0.087 4.087 20 C -0.161 4.161 21 C 0.067 3.933 22 O -0.235 6.235 23 C -0.021 4.021 24 C -0.208 4.208 25 C -0.218 4.218 26 C -0.105 4.105 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.319 -8.161 3.141 10.789 hybrid contribution -0.385 0.892 -0.662 1.175 sum 5.934 -7.270 2.478 9.706 Atomic orbital electron populations 1.21782 0.96240 1.01135 1.01811 1.21525 0.95430 0.97335 1.01882 1.21638 0.95616 0.96315 1.02290 1.21345 0.94240 0.95599 1.02787 1.21635 0.91697 0.98448 1.05460 1.20758 0.90460 0.82682 0.75098 1.90621 1.70873 1.31436 1.51348 1.45989 1.03305 1.08855 1.70738 1.19561 0.91889 0.78569 0.97929 1.21475 1.36529 1.06939 0.92457 0.91963 1.24915 0.95386 0.96212 0.97149 1.69922 1.38886 1.15293 1.28825 0.86470 0.78179 0.78886 0.84170 1.19593 1.20778 1.20833 1.17480 0.83970 1.00386 0.93014 1.21044 0.93347 0.97493 0.96864 1.20197 0.92478 1.05483 0.97961 1.18863 0.81899 0.98005 0.94535 1.86034 1.15601 1.82694 1.39128 1.22712 0.92111 0.99481 0.87802 1.21763 0.93030 1.03264 1.02737 1.20961 0.95213 1.08008 0.97591 1.20984 0.92734 0.98951 0.97881 0.92834 0.92776 0.93170 0.92155 0.92216 0.91994 0.91792 0.91713 0.91891 0.89195 0.87688 0.93892 0.94491 0.92539 0.85544 0.85435 0.92133 0.92245 0.91611 0.90621 0.91667 0.85745 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.40 5.93 -26.73 -0.16 -1.56 16 3 C -0.12 -1.56 5.21 -26.73 -0.14 -1.70 16 4 C -0.10 -1.56 4.50 -26.73 -0.12 -1.68 16 5 C -0.13 -2.36 4.36 -27.88 -0.12 -2.48 16 6 C 0.52 10.85 7.53 -10.98 -0.08 10.77 16 7 O -0.56 -12.78 15.74 5.54 0.09 -12.70 16 8 N -0.56 -12.10 2.51 -114.69 -0.29 -12.38 16 9 C 0.24 5.63 4.88 -5.19 -0.03 5.60 16 10 C -0.54 -13.73 9.16 -34.44 -0.32 -14.04 16 11 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 12 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -24.19 13.29 55.43 0.74 -23.45 16 14 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.14 2.94 4.76 -83.63 -0.40 2.54 16 19 C -0.07 -1.32 9.54 -39.41 -0.38 -1.70 16 20 C -0.14 -2.45 9.98 -39.45 -0.39 -2.85 16 21 C 0.11 1.84 6.69 -39.22 -0.26 1.58 16 22 O -0.32 -4.70 10.14 -19.62 -0.20 -4.90 16 23 C 0.05 0.59 5.46 37.16 0.20 0.79 16 24 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 25 C -0.20 -3.19 9.03 -39.46 -0.36 -3.55 16 26 C -0.09 -1.57 9.68 -39.41 -0.38 -1.96 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.06 0.98 8.10 -51.93 -0.42 0.56 16 36 H 0.09 1.54 7.26 -51.93 -0.38 1.16 16 37 H 0.10 1.96 7.91 -51.93 -0.41 1.55 16 38 H 0.04 1.02 6.47 -51.93 -0.34 0.68 16 39 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 42 H 0.13 1.92 8.06 -52.48 -0.42 1.50 16 43 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 44 H 0.06 0.59 7.65 -51.93 -0.40 0.20 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.12 1.62 6.29 -52.49 -0.33 1.29 16 49 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -29.39 403.94 -9.41 -38.80 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -8.54 Total: 3.76 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.28 Total: -10.59 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.45 Total: -35.83 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.11 Total: -17.60 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.39 -9.41 -38.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.315 kcal (2) G-P(sol) polarization free energy of solvation -29.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds