Wall clock time and date at job start Tue Mar 31 2020 12:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47111 * 2 1 4 4 C 1.52998 * 109.46779 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46779 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47052 * 180.02562 * 5 4 3 7 7 O 1.21300 * 119.99949 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00264 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99850 * 4.72923 * 8 6 5 10 10 C 1.50701 * 109.47393 * 270.00715 * 9 8 6 11 11 H 1.07997 * 119.99598 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99933 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00090 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99817 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47297 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47220 * 119.99845 * 14 12 10 17 17 H 1.48494 * 109.47257 * 240.00149 * 14 12 10 18 18 C 1.40104 * 120.00260 * 184.73497 * 8 6 5 19 19 C 1.38846 * 120.01408 * 67.88653 * 18 8 6 20 20 C 1.38091 * 119.98645 * 180.02562 * 19 18 8 21 21 C 1.38727 * 120.01530 * 0.02562 * 20 19 18 22 22 O 1.35963 * 119.98888 * 179.97438 * 21 20 19 23 23 C 1.42895 * 117.00301 * 180.02562 * 22 21 20 24 24 C 1.52998 * 109.47299 * 180.02562 * 23 22 21 25 25 C 1.38729 * 120.02503 * 0.23514 * 21 20 19 26 26 C 1.38085 * 120.01341 * 359.48598 * 25 21 20 27 27 H 1.08999 * 109.47047 * 300.00038 * 1 2 3 28 28 H 1.08995 * 109.47218 * 59.99907 * 1 2 3 29 29 H 1.08997 * 109.47268 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47047 * 239.99962 * 2 1 3 31 31 H 1.09006 * 109.46794 * 120.00207 * 2 1 3 32 32 H 1.08999 * 109.47196 * 60.00054 * 3 2 1 33 33 H 1.08995 * 109.47156 * 300.00131 * 3 2 1 34 34 H 1.08999 * 109.47191 * 60.00077 * 4 3 2 35 35 H 1.08995 * 109.47406 * 300.00005 * 4 3 2 36 36 H 1.08994 * 109.47220 * 60.00542 * 5 4 3 37 37 H 1.08998 * 109.47647 * 300.00072 * 5 4 3 38 38 H 1.08997 * 109.47146 * 30.00564 * 9 8 6 39 39 H 1.09005 * 109.46978 * 150.00254 * 9 8 6 40 40 H 0.96991 * 120.00096 * 180.02562 * 13 12 10 41 41 H 1.08005 * 120.01061 * 0.02562 * 19 18 8 42 42 H 1.08003 * 119.99682 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.47319 * 300.00335 * 23 22 21 44 44 H 1.09003 * 109.47020 * 60.00245 * 23 22 21 45 45 H 1.09003 * 109.47218 * 59.99958 * 24 23 22 46 46 H 1.09000 * 109.47011 * 179.97438 * 24 23 22 47 47 H 1.08998 * 109.47243 * 300.00277 * 24 23 22 48 48 H 1.08000 * 119.98729 * 179.71899 * 25 21 20 49 49 H 1.07998 * 120.00407 * 180.23303 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.5871 2.8849 0.0000 7 8 6.1935 1.8344 0.0009 8 7 6.2610 4.0520 0.0000 9 6 5.5323 5.3186 0.1046 10 6 5.1808 5.8115 -1.2755 11 1 5.4715 5.2387 -2.1436 12 6 4.4889 6.9941 -1.4297 13 7 4.1353 7.6918 -0.3724 14 14 4.0539 7.6054 -3.1404 15 1 4.5610 6.6449 -4.1531 16 1 2.5787 7.7215 -3.2642 17 1 4.6756 8.9352 -3.3639 18 6 7.6584 4.0541 -0.1002 19 6 8.2709 3.6489 -1.2785 20 6 9.6483 3.6506 -1.3764 21 6 10.4202 4.0566 -0.2976 22 8 11.7764 4.0576 -0.3944 23 6 12.5086 4.4872 0.7551 24 6 14.0081 4.4214 0.4586 25 6 9.8090 4.4565 0.8819 26 6 8.4316 4.4606 0.9791 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9284 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7164 3.3992 0.8895 37 1 3.7171 3.3983 -0.8904 38 1 4.6189 5.1659 0.6794 39 1 6.1578 6.0573 0.6059 40 1 3.6483 8.5236 -0.4809 41 1 7.6702 3.3324 -2.1184 42 1 10.1249 3.3359 -2.2931 43 1 12.2317 5.5127 1.0000 44 1 12.2757 3.8368 1.5982 45 1 14.2407 5.0721 -0.3845 46 1 14.5666 4.7495 1.3352 47 1 14.2854 3.3962 0.2134 48 1 10.4106 4.7681 1.7229 49 1 7.9558 4.7755 1.8961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072678928.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:47 Heat of formation + Delta-G solvation = -90.096178 kcal Electronic energy + Delta-G solvation = -26675.372441 eV Core-core repulsion = 22987.234379 eV Total energy + Delta-G solvation = -3688.138062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58249 -40.60205 -38.52540 -36.80930 -36.48404 -34.53443 -33.17047 -32.64551 -31.93611 -30.26268 -28.93676 -27.78090 -25.21717 -24.85400 -24.09063 -22.91384 -22.39548 -21.78060 -20.13813 -19.27527 -18.69208 -18.13252 -17.53364 -17.09929 -16.99942 -16.74122 -16.28140 -15.83199 -15.53846 -15.17162 -14.74040 -14.52667 -14.44107 -14.25272 -14.22803 -14.11015 -13.94964 -13.70347 -13.46586 -13.20751 -12.95865 -12.89910 -12.80185 -12.67220 -12.64558 -12.47804 -12.12882 -11.91955 -11.84820 -11.79378 -11.66892 -11.64563 -11.56395 -11.35302 -10.81076 -10.58027 -10.02931 -9.88788 -8.90426 -8.21169 -6.35511 0.32799 0.34749 1.39293 1.42781 1.52732 1.69507 2.17522 2.29278 2.42439 2.72618 3.09177 3.73406 3.80056 3.87189 3.96896 4.04549 4.08736 4.18441 4.28937 4.31016 4.34392 4.37746 4.39989 4.50532 4.54165 4.65818 4.71281 4.79253 4.90930 4.91099 4.96138 4.97102 5.00245 5.08289 5.10153 5.13692 5.17544 5.19760 5.23777 5.31192 5.39192 5.47276 5.50867 5.55271 5.58423 5.69258 6.00093 6.03310 6.43875 6.50557 6.76580 7.27764 7.39043 8.84374 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.003686 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.414504 B = 7594.803165 C = 9968.596356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.092 4.092 5 C -0.126 4.126 6 C 0.513 3.487 7 O -0.584 6.584 8 N -0.562 5.562 9 C 0.255 3.745 10 C -0.543 4.543 11 H 0.051 0.949 12 C 0.026 3.974 13 N -0.918 5.918 14 Si 0.954 3.046 15 H -0.272 1.272 16 H -0.273 1.273 17 H -0.280 1.280 18 C 0.103 3.897 19 C -0.085 4.085 20 C -0.146 4.146 21 C 0.118 3.882 22 O -0.327 6.327 23 C 0.041 3.959 24 C -0.147 4.147 25 C -0.190 4.190 26 C -0.096 4.096 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.040 0.960 39 H 0.019 0.981 40 H 0.268 0.732 41 H 0.115 0.885 42 H 0.146 0.854 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.159 0.841 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.781 -7.790 3.443 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.130 4.130 5 C -0.166 4.166 6 C 0.305 3.695 7 O -0.466 6.466 8 N -0.289 5.289 9 C 0.136 3.864 10 C -0.581 4.581 11 H 0.069 0.931 12 C -0.175 4.175 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.197 1.197 16 H -0.199 1.199 17 H -0.206 1.206 18 C 0.012 3.988 19 C -0.104 4.104 20 C -0.165 4.165 21 C 0.072 3.928 22 O -0.242 6.242 23 C -0.034 4.034 24 C -0.204 4.204 25 C -0.209 4.209 26 C -0.115 4.115 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.058 0.942 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.164 0.836 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.083 0.917 48 H 0.176 0.824 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.099 -8.202 3.357 11.355 hybrid contribution -0.443 0.904 -0.685 1.218 sum 6.656 -7.297 2.672 10.232 Atomic orbital electron populations 1.21765 0.94968 1.02060 1.01980 1.21512 0.96524 0.95951 1.02061 1.21607 0.93520 0.97761 1.02488 1.21281 0.96028 0.93585 1.02140 1.21647 0.89625 1.00180 1.05149 1.21276 0.91590 0.82202 0.74453 1.90590 1.71599 1.31914 1.52452 1.45926 1.04045 1.08239 1.70653 1.19208 0.91419 0.79040 0.96746 1.21611 1.36513 1.07105 0.92915 0.93080 1.25576 0.95255 0.96295 1.00338 1.69999 1.39490 1.15718 1.30487 0.85569 0.78237 0.78129 0.80164 1.19676 1.19853 1.20604 1.17840 0.83666 1.02842 0.94442 1.21039 0.94428 0.98571 0.96411 1.20386 0.91733 1.05182 0.99229 1.18942 0.82988 0.96682 0.94159 1.86053 1.14411 1.82498 1.41203 1.23120 0.93098 1.00157 0.87013 1.21797 0.91339 1.03345 1.03894 1.21269 0.94450 1.06628 0.98542 1.21151 0.93787 0.99003 0.97572 0.92522 0.92771 0.91903 0.92200 0.91883 0.91452 0.91923 0.92669 0.92168 0.88547 0.88671 0.94232 0.96339 0.92246 0.86725 0.83585 0.91241 0.91069 0.91858 0.88013 0.91735 0.82373 0.85208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.12 -2.62 5.93 30.60 0.18 -2.44 16 3 C -0.12 -2.92 5.21 30.59 0.16 -2.76 16 4 C -0.09 -2.86 4.50 30.59 0.14 -2.72 16 5 C -0.13 -4.61 4.36 29.85 0.13 -4.48 16 6 C 0.51 22.15 7.53 87.66 0.66 22.81 16 7 O -0.58 -27.30 15.74 -3.09 -0.05 -27.35 16 8 N -0.56 -25.06 2.51 -635.16 -1.59 -26.65 16 9 C 0.26 12.40 4.88 85.63 0.42 12.82 16 10 C -0.54 -28.42 9.16 25.60 0.23 -28.19 16 11 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 12 C 0.03 1.36 5.46 84.66 0.46 1.82 16 13 N -0.92 -50.07 13.29 21.45 0.28 -49.78 16 14 Si 0.95 41.84 29.54 68.60 2.03 43.87 16 15 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.10 4.35 4.76 38.11 0.18 4.54 16 19 C -0.08 -3.40 9.54 22.38 0.21 -3.19 16 20 C -0.15 -5.02 9.98 22.35 0.22 -4.80 16 21 C 0.12 3.73 6.69 22.50 0.15 3.88 16 22 O -0.33 -8.93 10.14 -93.14 -0.94 -9.87 16 23 C 0.04 0.76 5.46 71.98 0.39 1.16 16 24 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 25 C -0.19 -5.83 9.03 22.35 0.20 -5.63 16 26 C -0.10 -3.52 9.68 22.38 0.22 -3.30 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 35 H 0.06 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.10 3.36 7.26 -2.39 -0.02 3.34 16 37 H 0.10 3.66 7.91 -2.39 -0.02 3.64 16 38 H 0.04 1.93 6.47 -2.39 -0.02 1.92 16 39 H 0.02 0.96 7.86 -2.38 -0.02 0.94 16 40 H 0.27 13.83 8.31 -92.72 -0.77 13.06 16 41 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 42 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.07 1.20 7.67 -2.38 -0.02 1.19 16 44 H 0.07 1.19 7.65 -2.39 -0.02 1.18 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.16 3.67 6.29 -2.91 -0.02 3.65 16 49 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -63.10 403.94 6.04 -57.06 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.90 Total: 26.51 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 5.42 Total: -13.78 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -1.31 Total: -76.44 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.99 Total: -37.23 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -63.10 6.04 -57.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678928.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.038 kcal (2) G-P(sol) polarization free energy of solvation -63.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds