Wall clock time and date at job start Tue Mar 31 2020 13:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47134 * 305.00068 * 4 3 2 6 6 C 1.53005 * 109.46806 * 64.99926 * 4 3 2 7 7 C 1.50699 * 109.47339 * 184.99649 * 4 3 2 8 8 O 1.21285 * 120.00349 * 336.89715 * 7 4 3 9 9 N 1.34780 * 119.99911 * 156.89322 * 7 4 3 10 10 C 1.46505 * 119.99798 * 7.59535 * 9 7 4 11 11 C 1.50696 * 109.47043 * 92.97395 * 10 9 7 12 12 H 1.08007 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00347 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99422 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00262 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47041 * 89.99950 * 15 13 11 17 17 H 1.48504 * 109.46930 * 209.99612 * 15 13 11 18 18 H 1.48501 * 109.47252 * 330.00009 * 15 13 11 19 19 C 1.40107 * 120.00276 * 187.59757 * 9 7 4 20 20 C 1.38846 * 120.01126 * 6.20717 * 19 9 7 21 21 C 1.38085 * 119.98362 * 179.79003 * 20 19 9 22 22 C 1.38730 * 120.01676 * 0.48832 * 21 20 19 23 23 O 1.35962 * 119.98654 * 179.72252 * 22 21 20 24 24 C 1.42893 * 117.00199 * 0.02562 * 23 22 21 25 25 C 1.53002 * 109.47075 * 180.02562 * 24 23 22 26 26 C 1.38725 * 120.02052 * 359.74367 * 22 21 20 27 27 C 1.38077 * 120.02160 * 0.02562 * 26 22 21 28 28 H 1.08997 * 109.47826 * 60.00094 * 1 2 3 29 29 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47084 * 299.99461 * 1 2 3 31 31 H 1.08997 * 109.47826 * 119.99906 * 2 1 3 32 32 H 1.08994 * 109.46944 * 240.00340 * 2 1 3 33 33 H 1.09006 * 109.47363 * 300.00655 * 3 2 1 34 34 H 1.09003 * 109.47226 * 60.00243 * 3 2 1 35 35 H 1.09000 * 109.47218 * 172.74105 * 6 4 3 36 36 H 1.08997 * 109.47536 * 292.74212 * 6 4 3 37 37 H 1.09001 * 109.47259 * 52.74290 * 6 4 3 38 38 H 1.09004 * 109.46774 * 212.97001 * 10 9 7 39 39 H 1.08998 * 109.47116 * 332.97388 * 10 9 7 40 40 H 0.97009 * 120.00126 * 179.97438 * 14 13 11 41 41 H 1.08008 * 120.01126 * 0.02697 * 20 19 9 42 42 H 1.08008 * 119.99493 * 180.20601 * 21 20 19 43 43 H 1.09006 * 109.47108 * 299.99875 * 24 23 22 44 44 H 1.08997 * 109.47334 * 60.00134 * 24 23 22 45 45 H 1.09002 * 109.47591 * 60.00233 * 25 24 23 46 46 H 1.09005 * 109.47289 * 179.97438 * 25 24 23 47 47 H 1.08992 * 109.47239 * 299.99773 * 25 24 23 48 48 H 1.08009 * 119.98375 * 180.02562 * 26 22 21 49 49 H 1.08000 * 120.01044 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8409 6 6 4.0794 0.8332 -1.3084 7 6 4.0722 2.8580 0.1231 8 8 3.3634 3.7844 -0.2092 9 7 5.3092 3.0946 0.6031 10 6 6.2258 1.9782 0.8477 11 6 7.0842 1.7568 -0.3709 12 1 6.9592 2.3846 -1.2408 13 6 8.0285 0.7521 -0.3758 14 7 8.1804 -0.0127 0.6833 15 14 9.0920 0.4772 -1.8866 16 1 10.3259 1.2967 -1.7792 17 1 9.4582 -0.9590 -1.9795 18 1 8.3376 0.8754 -3.1022 19 6 5.7186 4.4080 0.8682 20 6 4.8112 5.4534 0.7601 21 6 5.2141 6.7472 1.0257 22 6 6.5277 7.0038 1.3907 23 8 6.9252 8.2786 1.6466 24 6 5.9377 9.3037 1.5208 25 6 6.5667 10.6603 1.8448 26 6 7.4359 5.9603 1.4941 27 6 7.0331 4.6656 1.2335 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 5.1616 0.9498 -1.3662 36 1 3.8260 -0.2265 -1.3384 37 1 3.6135 1.3422 -2.1522 38 1 6.8613 2.2104 1.7024 39 1 5.6515 1.0756 1.0565 40 1 8.8444 -0.7198 0.6798 41 1 3.7895 5.2543 0.4720 42 1 4.5076 7.5601 0.9449 43 1 5.5543 9.3157 0.5005 44 1 5.1198 9.1073 2.2140 45 1 7.3844 10.8566 1.1513 46 1 5.8135 11.4424 1.7484 47 1 6.9503 10.6487 2.8649 48 1 8.4584 6.1607 1.7787 49 1 7.7404 3.8533 1.3137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078380343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:08 Heat of formation + Delta-G solvation = -59.317722 kcal Electronic energy + Delta-G solvation = -27479.018737 eV Core-core repulsion = 23792.215329 eV Total energy + Delta-G solvation = -3686.803408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38500 -39.31548 -37.17828 -35.58205 -35.01462 -32.70756 -31.92169 -31.42359 -30.39685 -28.44693 -27.22745 -26.23854 -24.06940 -23.77440 -22.97012 -22.14801 -21.04134 -20.26149 -18.53633 -17.87142 -16.91571 -16.61764 -16.27457 -15.93493 -15.19881 -14.93741 -14.60200 -14.39684 -14.20582 -13.89968 -13.44601 -13.34144 -13.20949 -12.97827 -12.86326 -12.51469 -12.50575 -12.19444 -12.05384 -11.85399 -11.69383 -11.68539 -11.48847 -11.27465 -11.08408 -10.94057 -10.83682 -10.70447 -10.68783 -10.46089 -10.31063 -10.23399 -10.18339 -9.89488 -8.91918 -8.69734 -8.54826 -8.44442 -6.89824 -6.26917 -4.34889 1.85891 1.93713 3.18930 3.23484 3.26841 3.32432 3.45290 3.71119 4.25954 4.43979 4.89943 4.93396 4.99556 5.04341 5.10108 5.18036 5.20011 5.32068 5.35764 5.47838 5.51184 5.54124 5.71707 5.72296 5.79920 5.87098 5.94787 5.96278 5.99338 6.05959 6.08304 6.17468 6.21508 6.35664 6.36743 6.41067 6.48750 6.55209 6.63614 6.80794 6.92221 6.96789 7.03848 7.09951 7.18028 7.59009 7.66703 7.89119 7.90776 8.16143 8.67878 8.83330 9.31631 10.78272 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.004470 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.756227 B = 6262.509614 C = 8921.240543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.101 4.101 5 H 0.096 0.904 6 C -0.154 4.154 7 C 0.522 3.478 8 O -0.549 6.549 9 N -0.534 5.534 10 C 0.227 3.773 11 C -0.536 4.536 12 H 0.064 0.936 13 C 0.070 3.930 14 N -0.887 5.887 15 Si 0.895 3.105 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.138 3.862 20 C -0.137 4.137 21 C -0.192 4.192 22 C 0.085 3.915 23 O -0.323 6.323 24 C 0.056 3.944 25 C -0.150 4.150 26 C -0.133 4.133 27 C -0.105 4.105 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.267 0.733 41 H 0.175 0.825 42 H 0.120 0.880 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.126 0.874 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.901 7.734 1.747 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.122 4.122 5 H 0.114 0.886 6 C -0.211 4.211 7 C 0.313 3.687 8 O -0.430 6.430 9 N -0.253 5.253 10 C 0.108 3.892 11 C -0.574 4.574 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.722 3.278 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.196 1.196 19 C 0.042 3.958 20 C -0.157 4.157 21 C -0.211 4.211 22 C 0.040 3.960 23 O -0.238 6.238 24 C -0.019 4.019 25 C -0.208 4.208 26 C -0.152 4.152 27 C -0.125 4.125 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.191 0.809 42 H 0.137 0.863 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.144 0.856 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.978 8.014 1.701 11.436 hybrid contribution 0.658 -0.245 -0.801 1.065 sum -7.321 7.770 0.900 10.713 Atomic orbital electron populations 1.21759 0.96222 1.01128 1.01649 1.21575 0.95382 0.97015 1.02345 1.21469 0.93292 0.96359 1.02676 1.21233 0.96073 0.93116 1.01757 0.88632 1.21981 1.05344 0.99691 0.94107 1.20798 0.80635 0.91530 0.75723 1.90283 1.57859 1.45022 1.49838 1.46032 1.14195 1.06399 1.58710 1.19736 0.88382 0.83070 0.98014 1.21334 1.19038 1.16722 1.00334 0.91794 1.24893 0.96753 0.95330 0.96427 1.69914 1.34437 1.19581 1.28479 0.86529 0.80803 0.77486 0.82972 1.20362 1.20983 1.19635 1.17979 0.93387 0.84633 0.99765 1.22320 1.02839 0.90473 1.00044 1.21094 0.94785 0.97898 1.07341 1.18933 0.93422 0.83586 1.00016 1.86007 1.38495 1.13686 1.85581 1.22646 0.91306 0.87110 1.00880 1.21759 1.01772 0.94340 1.02890 1.20150 0.99029 0.90292 1.05735 1.20970 0.94812 0.96573 1.00133 0.92877 0.93065 0.92966 0.92014 0.91569 0.91280 0.92204 0.88168 0.92257 0.93337 0.93946 0.93144 0.92326 0.80855 0.86261 0.92432 0.92453 0.91695 0.90765 0.91708 0.85609 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.13 -1.55 5.69 -26.73 -0.15 -1.71 16 3 C -0.10 -1.48 4.10 -26.73 -0.11 -1.59 16 4 C -0.10 -1.74 1.90 -91.77 -0.17 -1.92 16 5 H 0.10 1.66 6.41 -51.93 -0.33 1.33 16 6 C -0.15 -2.68 8.67 37.16 0.32 -2.36 16 7 C 0.52 10.58 6.69 -10.98 -0.07 10.50 16 8 O -0.55 -11.68 12.69 5.55 0.07 -11.61 16 9 N -0.53 -11.38 2.69 -114.70 -0.31 -11.69 16 10 C 0.23 5.14 4.14 -5.19 -0.02 5.12 16 11 C -0.54 -13.16 6.77 -34.44 -0.23 -13.40 16 12 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 13 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -23.11 13.29 55.43 0.74 -22.37 16 15 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C 0.14 2.88 6.49 -83.63 -0.54 2.34 16 20 C -0.14 -2.69 8.98 -39.41 -0.35 -3.04 16 21 C -0.19 -3.32 9.03 -39.46 -0.36 -3.67 16 22 C 0.09 1.49 6.69 -39.22 -0.26 1.22 16 23 O -0.32 -5.04 10.14 -19.62 -0.20 -5.24 16 24 C 0.06 0.66 5.46 37.16 0.20 0.86 16 25 C -0.15 -1.35 10.28 37.16 0.38 -0.96 16 26 C -0.13 -2.40 9.98 -39.46 -0.39 -2.79 16 27 C -0.10 -2.09 9.09 -39.42 -0.36 -2.44 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.81 6.73 -51.93 -0.35 0.46 16 33 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.10 2.05 5.25 -51.93 -0.27 1.78 16 36 H 0.06 0.91 6.93 -51.93 -0.36 0.55 16 37 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 38 H 0.04 1.01 6.67 -51.93 -0.35 0.67 16 39 H 0.05 1.15 5.75 -51.93 -0.30 0.85 16 40 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 41 H 0.18 3.54 4.70 -55.25 -0.26 3.28 16 42 H 0.12 1.74 6.29 -52.48 -0.33 1.41 16 43 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 44 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.13 2.03 8.06 -52.48 -0.42 1.61 16 49 H 0.15 3.06 6.20 -52.49 -0.33 2.73 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -27.12 384.74 -8.64 -35.76 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.86 Total: 7.87 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -1.85 Total: -13.41 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.43 Total: -34.06 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.13 Total: -16.85 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -27.12 -8.64 -35.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078380343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.562 kcal (2) G-P(sol) polarization free energy of solvation -27.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds